genome.fa.s1.2.7.7.80.10.50.1000.166.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr01 113035596 
Parameters: 2 7 7 80 10 50 1000
Length:  113035596

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   

This is table  166  of  378  ( 45343 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48477338--48477375	18	2.2	18	90	4	60	26	50	0	23	1.50
48477759--48477795	19	2.0	18	94	5	65	32	0	0	67	0.91
48477644--48477786	63	2.3	63	81	12	168	25	4	5	64	1.34
48477759--48477814	21	2.8	21	82	15	57	37	0	1	60	1.07
48477767--48477797	14	2.2	14	94	0	53	32	0	0	67	0.91
48478257--48478495	126	1.9	126	92	0	406	30	15	15	38	1.89
48479819--48479865	19	2.5	19	86	6	60	25	25	10	38	1.88
48482665--48482739	25	3.0	24	80	9	87	76	1	21	1	0.94
48482664--48482741	14	5.8	14	71	18	67	76	1	20	1	0.92
48482664--48482747	25	3.4	24	76	15	73	76	2	20	1	0.97
48484253--48484488	46	5.2	46	63	16	125	30	21	22	25	1.99
48484183--48484471	89	3.2	88	69	14	250	31	21	21	25	1.98
48484093--48484561	90	5.2	89	67	15	284	29	22	21	25	1.99
48484465--48484793	133	2.5	132	90	1	507	29	22	23	25	1.99
48484002--48484622	179	3.5	179	91	1	976	31	22	21	24	1.98
48484899--48485049	44	3.4	43	75	13	164	37	21	17	23	1.94
48484807--48485113	87	3.5	87	84	3	350	36	21	18	23	1.95
48484843--48485061	44	5.0	44	71	16	159	37	20	18	24	1.94
48485065--48485432	85	4.3	86	89	3	557	26	23	28	21	1.99
48485689--48485793	29	3.4	29	76	15	86	31	48	0	19	1.55
48485718--48485787	35	2.0	35	97	0	131	28	52	0	18	1.45
48485771--48485808	18	2.2	18	90	4	60	26	50	0	23	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48486191--48486226	7	4.9	8	83	16	51	36	0	0	63	0.94
48486083--48486203	63	1.9	63	83	8	158	25	5	5	62	1.40
48486192--48486226	14	2.4	14	95	4	61	34	0	0	65	0.93
48486089--48486221	63	2.1	63	81	12	148	27	5	4	62	1.36
48486192--48486243	15	3.1	16	81	13	52	36	0	1	61	1.07
48486686--48486929	126	1.9	126	94	0	434	29	17	15	37	1.91
48488117--48488165	2	24.5	2	100	0	98	51	0	48	0	1.00
48493316--48493365	8	5.6	9	75	15	50	74	0	2	24	0.93
48493316--48493363	14	3.5	13	80	11	53	75	0	2	22	0.91
48493316--48493365	18	2.7	18	87	3	64	74	0	2	24	0.93
48499722--48499770	5	9.8	5	84	0	62	36	24	2	36	1.67
48499722--48499776	20	2.8	20	80	0	65	34	23	3	38	1.73
48501702--48501828	42	3.0	42	76	0	128	26	26	15	30	1.96
48508147--48508198	20	2.6	20	96	0	95	17	32	34	15	1.91
48509456--48509588	42	3.2	42	71	2	115	24	27	19	29	1.98
48510356--48510382	9	3.0	9	100	0	54	66	22	0	11	1.22
48529461--48529642	40	4.6	40	88	1	249	27	28	19	24	1.99
48529460--48529648	80	2.4	80	90	1	290	26	28	20	23	1.99
48537505--48537710	80	2.6	80	89	2	319	27	29	20	23	1.99
48537509--48537710	40	5.1	40	89	3	284	27	29	20	22	1.98
48548626--48548843	49	4.6	48	79	7	221	29	19	28	22	1.98
48553601--48553632	4	7.8	4	96	3	55	21	3	0	75	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48557801--48557858	23	2.5	24	78	13	68	18	24	18	37	1.94
48560070--48560506	47	9.3	47	90	0	696	28	29	9	32	1.89
48560167--48560244	25	3.2	25	65	23	67	30	32	6	30	1.83
48570002--48570172	38	4.5	38	85	1	218	32	26	19	21	1.97
48570469--48570603	43	3.1	44	83	6	184	28	29	17	24	1.97
48577268--48577320	2	26.5	2	100	0	106	49	0	0	50	1.00
48578578--48578624	15	3.1	14	77	22	51	68	2	2	27	1.13
48578871--48579101	3	73.3	3	66	23	79	59	0	4	34	1.24
48578890--48578929	19	2.2	18	90	4	62	62	2	7	27	1.35
48578959--48579113	38	3.8	39	72	18	113	61	1	1	35	1.15
48578920--48579108	18	10.3	19	72	18	118	59	0	3	36	1.17
48578965--48579113	29	5.4	28	74	17	127	61	1	2	34	1.16
48589552--48589578	14	1.9	14	100	0	54	44	0	7	48	1.31
48593250--48593296	15	3.1	14	77	22	51	68	2	2	27	1.13
48593542--48593773	3	73.3	3	67	24	81	59	1	3	35	1.24
48593597--48593658	32	1.9	33	83	9	83	54	0	4	40	1.22
48593641--48593791	29	4.8	30	73	19	112	62	1	1	34	1.12
48593592--48593791	50	4.1	48	73	16	137	60	1	2	36	1.17
48602233--48602259	2	13.5	2	100	0	54	48	0	0	51	1.00
48605595--48605649	27	2.0	27	96	0	101	56	1	14	27	1.49
48606094--48606154	11	5.3	11	71	11	50	52	3	1	42	1.27
48606504--48606538	12	2.8	13	86	8	54	57	0	0	42	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48606503--48606535	13	2.8	12	86	13	50	57	0	0	42	0.98
48607417--48607447	15	2.1	15	93	0	53	19	0	25	54	1.44
48607700--48607729	15	2.0	15	93	0	51	36	0	13	50	1.42
48612600--48612624	2	12.5	2	100	0	50	48	0	0	52	1.00
48614716--48615508	48	16.9	48	92	4	1285	34	6	27	31	1.83
48615099--48615169	22	3.2	22	64	28	60	33	8	29	28	1.86
48615172--48615230	17	3.4	17	66	25	50	33	1	25	38	1.66
48615160--48615232	36	2.0	36	100	0	146	32	2	28	35	1.72
48616993--48617151	40	4.0	40	99	0	309	20	23	30	26	1.98
48618098--48618242	37	3.9	37	97	0	263	24	33	20	22	1.97
48618405--48618496	47	2.0	47	86	0	130	27	29	10	32	1.91
48622264--48622364	28	3.5	29	87	6	134	30	27	12	28	1.93
48630179--48630279	28	3.5	29	87	6	134	30	27	12	28	1.93
48632531--48632581	25	2.0	25	81	7	59	35	13	29	21	1.92
48637307--48637442	29	4.6	29	80	8	141	28	14	30	26	1.95
48645205--48645340	29	4.6	29	80	8	141	28	14	30	26	1.95
48646768--48646828	28	2.1	29	84	3	79	34	11	27	26	1.91
48646805--48647029	48	4.7	48	94	0	396	34	7	29	28	1.85
48650522--48650550	14	2.0	15	93	6	51	20	0	27	51	1.47
48651068--48651097	15	2.0	15	93	0	51	20	0	23	56	1.42
48653331--48653376	23	2.0	23	100	0	92	43	4	17	34	1.69
48655413--48655594	94	1.9	94	87	0	265	31	19	12	36	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48655507--48655742	63	3.7	62	70	9	188	32	18	12	37	1.88
48655637--48655778	62	2.3	63	81	7	173	31	19	12	35	1.90
48659713--48659753	20	2.0	21	90	4	66	36	2	14	46	1.58
48660210--48660243	16	2.1	16	88	0	50	41	2	20	35	1.68
48662993--48663069	29	2.7	29	87	0	100	27	24	19	28	1.99
48668099--48668210	40	2.8	40	84	2	136	23	26	24	25	2.00
48679283--48679550	46	5.7	47	81	9	284	23	29	19	27	1.98
48679280--48679551	94	2.9	94	83	11	362	24	29	18	27	1.98
48679283--48679550	140	1.9	139	83	10	350	23	29	19	27	1.98
48684383--48684558	46	3.8	45	81	10	212	21	21	29	28	1.98
48684379--48684550	93	1.8	93	94	0	308	20	21	30	27	1.98
48687500--48687578	15	5.4	15	77	10	83	10	16	13	59	1.60
48687491--48687577	29	3.0	30	80	12	92	10	16	16	57	1.65
48689964--48690139	46	3.8	46	78	14	191	21	20	29	28	1.98
48689960--48690131	93	1.8	93	91	2	283	21	20	29	27	1.98
48694950--48695038	12	7.9	12	69	23	61	41	1	2	55	1.20
48694942--48695039	11	8.8	11	72	19	55	41	1	2	55	1.18
48694940--48695084	67	2.1	69	82	6	181	42	1	2	53	1.24
48697465--48697544	32	2.7	29	76	14	72	47	7	2	42	1.45
48703601--48703667	28	2.4	28	82	7	73	64	1	2	31	1.18
48705970--48706005	18	2.1	18	89	5	56	36	8	0	55	1.30
48711830--48711877	25	1.9	25	95	0	87	29	22	25	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48711835--48711890	25	2.2	25	83	0	67	28	23	21	26	1.99
48716072--48716176	3	35.7	3	80	11	119	34	0	3	61	1.14
48716389--48716482	33	2.6	37	74	22	92	43	1	4	51	1.28
48716411--48716491	33	2.5	33	82	11	87	46	0	6	46	1.27
48716625--48716669	22	2.2	20	88	8	63	75	2	6	15	1.11
48716713--48716755	6	7.2	6	81	7	52	76	0	23	0	0.78
48716713--48716755	11	3.6	12	87	9	61	76	0	23	0	0.78
48716717--48716753	17	2.2	17	95	0	65	75	0	24	0	0.80
48717742--48717853	44	2.5	44	86	5	154	21	18	18	41	1.91
48726416--48726532	46	2.6	44	80	14	123	27	17	29	25	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378