genome.fa.s1.2.7.7.80.10.50.1000.171.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr01 113035596 
Parameters: 2 7 7 80 10 50 1000
Length:  113035596

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   

This is table  171  of  378  ( 45343 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49734374--49734718	81	4.3	80	81	3	262	35	20	7	37	1.80
49734226--49734787	27	20.8	27	77	6	165	35	20	8	35	1.83
49734844--49734933	27	3.3	27	84	3	119	36	21	23	18	1.95
49736182--49736238	9	5.9	9	73	15	51	36	7	21	35	1.80
49736180--49736242	20	3.2	20	90	0	108	38	11	19	31	1.86
49736296--49736462	24	7.0	23	87	6	219	29	22	20	26	1.99
49736297--49736462	47	3.5	46	87	5	217	29	22	21	26	1.99
49736296--49736461	71	2.3	71	90	3	253	29	22	21	26	1.99
49736652--49736715	31	2.1	31	87	0	92	35	14	23	26	1.93
49744159--49744335	40	4.4	40	85	4	234	25	27	22	23	2.00
49752126--49752302	40	4.4	40	85	4	234	25	27	22	23	2.00
49754751--49754793	16	2.7	15	78	7	50	44	6	0	48	1.29
49757685--49757759	38	2.0	38	91	0	123	21	22	26	29	1.99
49757736--49757924	43	4.4	43	87	4	249	14	22	32	30	1.94
49758241--49758367	45	2.9	44	81	10	145	25	23	27	23	2.00
49760343--49760407	22	3.0	22	77	8	69	30	21	26	21	1.98
49760549--49760670	41	3.0	41	87	1	165	26	29	19	24	1.99
49760918--49761293	27	14.0	27	81	6	259	29	10	20	39	1.86
49761280--49761344	27	2.4	27	84	0	85	30	15	16	36	1.90
49768659--49768697	19	2.1	19	100	0	78	35	20	10	33	1.86
49771165--49771254	45	2.0	45	100	0	180	17	26	13	42	1.86
49775105--49775238	46	2.9	44	78	12	137	26	17	29	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49775113--49775289	47	3.8	48	76	11	136	27	19	29	23	1.98
49775116--49775332	47	4.6	46	75	12	133	26	18	30	23	1.98
49775113--49775283	94	1.8	94	84	2	236	28	18	29	23	1.98
49778393--49778665	47	5.8	46	74	9	160	23	31	17	27	1.97
49778489--49778667	46	3.8	46	75	15	152	24	29	18	27	1.98
49789130--49789378	40	6.2	40	89	2	376	25	24	28	22	1.99
49797297--49797546	40	6.2	40	90	1	385	25	24	28	22	1.99
49804258--49804441	40	4.8	38	78	5	167	21	26	23	27	1.99
49812743--49812872	40	3.3	39	76	8	136	23	27	23	24	2.00
49812759--49812910	40	3.8	40	78	6	148	22	26	23	27	1.99
49812759--49812908	80	1.9	80	83	8	198	22	26	24	27	1.99
49818820--49819017	71	2.8	70	92	3	294	33	17	28	20	1.95
49818886--49819003	41	3.1	41	60	28	98	32	17	28	21	1.96
49818854--49819017	71	2.3	71	100	0	328	35	17	28	18	1.94
49826388--49826585	71	2.8	70	92	3	294	33	17	28	20	1.95
49826454--49826571	41	3.1	41	60	28	98	32	17	28	21	1.96
49826422--49826585	71	2.3	71	100	0	328	35	17	28	18	1.94
49834968--49835329	47	7.7	47	69	17	177	29	17	27	25	1.97
49846486--49846581	42	2.3	42	83	5	113	31	26	18	23	1.98
49846476--49846590	43	2.7	43	78	5	117	33	26	18	22	1.97
49852176--49852801	27	23.2	27	86	3	776	26	21	10	41	1.85
49852806--49853001	54	3.6	54	84	2	250	35	18	19	26	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49852806--49853001	27	7.3	27	85	2	223	35	18	19	26	1.95
49853200--49853282	27	3.1	26	87	5	112	19	20	21	38	1.93
49853593--49853666	27	2.8	27	85	6	89	17	24	21	36	1.95
49853784--49853991	6	34.3	6	73	14	169	20	16	13	49	1.80
49853784--49853970	85	2.2	85	96	0	338	20	17	13	48	1.80
49853784--49853991	30	7.1	30	82	11	252	20	16	13	49	1.80
49853979--49854012	18	1.9	17	88	5	50	23	11	11	52	1.70
49858329--49858381	25	2.2	25	83	12	67	43	24	0	32	1.55
49860183--49860398	50	4.3	50	77	4	193	30	12	18	39	1.86
49860210--49860398	100	1.9	100	83	2	245	30	11	17	40	1.85
49862599--49862742	64	2.2	64	90	0	216	27	27	15	29	1.96
49863275--49863331	29	2.0	29	86	6	80	29	24	7	38	1.82
49865093--49865180	42	2.0	43	80	8	99	34	27	17	21	1.95
49867451--49867486	6	6.3	6	87	12	58	72	0	13	13	1.13
49867451--49867486	17	2.1	17	94	0	63	72	0	13	13	1.13
49867451--49867486	11	3.2	12	92	7	58	72	0	13	13	1.13
49869614--49869743	47	2.8	47	89	0	179	23	15	27	33	1.95
49870593--49870629	18	2.1	18	100	0	74	27	27	35	10	1.90
49870719--49870760	21	2.0	21	86	9	59	35	21	7	35	1.81
49873506--49873579	37	2.0	37	94	5	132	32	24	10	32	1.90
49877164--49877356	40	4.8	40	81	2	190	26	24	24	23	2.00
49877166--49877356	80	2.4	80	83	3	215	26	24	25	23	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49881050--49881200	40	3.8	40	77	13	134	27	23	26	22	2.00
49881087--49881216	40	3.2	40	77	4	138	24	23	27	23	2.00
49888154--49888264	40	2.8	40	81	12	129	24	25	28	21	1.99
49888154--49888280	40	3.2	40	77	4	123	23	24	29	22	1.99
49895448--49895670	49	4.5	49	74	4	189	26	17	25	30	1.97
49908661--49908742	43	1.9	43	89	0	128	13	25	32	28	1.93
49913117--49913179	30	2.1	31	87	3	92	25	22	15	36	1.94
49913371--49913560	24	8.0	24	91	4	287	26	21	23	28	1.99
49913392--49913560	47	3.6	47	93	1	293	27	20	23	28	1.99
49913371--49913560	71	2.7	72	90	4	287	26	21	23	28	1.99
49913614--49913676	20	3.2	20	97	0	117	30	19	14	36	1.91
49914968--49915284	27	11.8	27	88	4	408	40	8	23	28	1.84
49915235--49915485	27	9.3	27	82	3	213	31	8	20	39	1.83
49915362--49915502	26	5.3	26	82	5	138	31	7	18	42	1.77
49918822--49919027	40	5.2	40	81	4	193	25	23	26	25	2.00
49918824--49919027	78	2.6	80	84	3	243	25	23	26	25	2.00
49923054--49923275	40	5.6	40	84	8	292	24	23	26	25	2.00
49933524--49933600	39	2.0	39	94	0	136	27	31	20	20	1.98
49936259--49936435	40	4.4	40	83	0	203	26	25	21	26	1.99
49941782--49941886	42	2.4	43	82	7	115	25	17	22	34	1.96
49941796--49941886	42	2.1	44	85	4	123	26	16	23	34	1.95
49941823--49941917	43	2.2	42	77	5	102	28	20	22	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49942199--49942223	8	3.1	8	100	0	50	28	0	12	60	1.32
49943407--49943491	43	2.0	42	84	6	109	36	16	17	29	1.92
49950294--49950330	17	2.2	17	95	0	65	40	27	13	18	1.88
49955963--49956125	70	2.3	71	97	1	310	34	18	28	19	1.95
49963497--49963659	70	2.3	71	97	1	310	34	18	28	19	1.95
49981520--49981575	15	3.7	15	88	7	87	12	16	10	60	1.58
49986303--49986574	46	6.0	46	97	1	512	33	6	27	31	1.84
49986303--49986612	138	2.2	137	92	3	471	33	7	28	31	1.85
49986578--49986688	47	2.4	47	89	3	161	36	9	27	27	1.87
49989247--49989510	40	6.6	40	95	0	429	25	21	28	25	1.99
49990174--49990274	40	2.5	40	82	6	107	26	22	25	24	2.00
49990212--49990308	40	2.5	40	78	8	99	27	24	24	22	2.00
49992975--49993246	46	6.0	46	96	1	503	33	6	27	31	1.84
49992975--49993284	138	2.2	137	91	3	462	32	7	28	31	1.85
49993250--49993360	47	2.4	47	89	3	161	36	9	27	27	1.87
50001134--50001167	18	1.9	18	88	5	52	29	14	14	41	1.86
50004780--50004868	29	3.1	29	95	1	153	26	30	15	26	1.96
50016662--50017014	46	7.5	47	68	17	164	28	16	29	25	1.97
50019178--50019307	40	3.3	39	76	8	136	23	27	23	24	2.00
50019194--50019345	40	3.8	40	78	6	148	22	26	23	27	1.99
50019194--50019343	80	1.9	80	83	8	198	22	26	24	27	1.99
50021209--50021376	40	4.2	40	77	3	151	22	26	23	27	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50025562--50025785	40	5.7	40	81	6	237	26	21	28	23	1.99
50025562--50025778	79	2.8	78	88	6	296	26	22	28	23	1.99
50035375--50035557	40	4.6	40	85	5	212	26	26	20	26	1.99
50038412--50038635	40	5.6	39	77	11	181	22	23	28	26	1.99
50038453--50038658	79	2.6	79	80	5	236	22	23	27	26	2.00
50043719--50043879	29	5.6	29	81	4	83	25	32	16	26	1.96
50043718--50043879	58	2.8	59	85	3	195	25	32	16	26	1.96
50049273--50049427	40	3.8	40	86	8	231	23	23	28	25	1.99
50049277--50049429	83	1.8	83	95	0	279	22	23	29	24	1.99
50049273--50049456	40	4.6	40	82	8	221	24	22	27	25	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378