genome.fa.s1.2.7.7.80.10.50.1000.151.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr01 113035596 
Parameters: 2 7 7 80 10 50 1000
Length:  113035596

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   

This is table  151  of  378  ( 45343 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43432215--43432317	44	2.3	44	88	0	161	36	20	22	20	1.95
43432237--43432320	22	3.8	22	67	0	69	33	17	26	22	1.96
43432670--43432783	27	4.3	26	81	8	95	28	12	18	41	1.86
43432722--43432886	27	6.1	27	78	12	153	31	12	19	36	1.89
43432722--43432886	54	3.1	52	82	6	188	31	12	19	36	1.89
43432711--43432886	81	2.2	80	85	3	228	30	11	20	36	1.89
43440890--43440920	3	10.3	3	100	0	62	67	0	32	0	0.91
43444798--43444838	17	2.4	17	79	0	55	46	17	14	21	1.84
43450451--43450526	38	2.0	38	97	0	143	52	7	6	32	1.56
43451171--43451202	16	2.0	16	100	0	64	50	37	6	6	1.53
43455098--43455206	38	2.8	39	92	2	184	24	22	13	38	1.91
43455159--43455223	32	2.1	31	94	2	112	24	21	15	38	1.92
43455414--43455532	24	5.0	24	84	9	145	26	24	21	27	1.99
43455414--43455532	47	2.5	48	87	8	163	26	24	21	27	1.99
43455583--43455642	20	3.0	20	92	0	102	31	20	11	36	1.88
43455684--43455731	25	1.9	25	86	0	69	25	16	25	33	1.96
43458277--43458315	16	2.4	16	86	0	60	53	20	17	7	1.68
43458563--43458639	28	2.8	28	87	0	109	29	16	29	23	1.96
43465121--43465216	48	2.0	48	100	0	192	37	16	27	18	1.92
43467837--43467881	18	2.6	18	85	3	65	8	22	46	22	1.79
43469254--43469280	13	2.1	13	100	0	54	40	14	0	44	1.46
43473973--43474139	40	4.2	40	79	6	169	26	22	26	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43492352--43492777	239	1.8	232	83	9	565	31	12	19	35	1.90
43493564--43493593	13	2.3	13	94	0	51	26	10	6	56	1.57
43498489--43498532	23	1.9	23	86	9	63	40	11	29	18	1.85
43501293--43501419	39	3.3	38	84	3	173	33	29	18	17	1.94
43515251--43515414	71	2.3	71	100	0	328	18	28	17	35	1.94
43515251--43515448	71	2.8	70	91	3	258	20	28	17	33	1.95
43516738--43516891	28	5.5	28	74	7	114	22	17	27	31	1.97
43516734--43516921	56	3.3	56	85	4	236	23	17	28	30	1.97
43516734--43516891	57	2.8	56	89	0	226	22	17	28	31	1.96
43520442--43520994	48	11.9	48	90	6	886	34	5	28	31	1.81
43520469--43520539	34	2.1	34	100	0	142	36	5	25	32	1.79
43521135--43521274	37	3.8	37	95	0	244	24	19	31	25	1.98
43527712--43527802	28	3.2	28	87	10	132	20	23	23	32	1.98
43527712--43527813	28	3.6	27	81	9	114	21	24	21	32	1.98
43527712--43527827	56	2.1	55	81	12	130	19	23	21	35	1.96
43528266--43528304	19	2.1	19	85	0	51	15	5	7	71	1.26
43535746--43535770	2	12.5	2	100	0	50	52	0	0	48	1.00
43536150--43536281	41	3.2	41	81	2	140	36	22	20	20	1.95
43549241--43549390	54	2.8	54	84	4	169	35	19	12	33	1.88
43549248--43549417	27	6.3	27	76	9	123	36	19	11	32	1.88
43549275--43549415	54	2.6	53	82	4	158	38	19	9	32	1.84
43549370--43549431	27	2.3	27	91	5	99	43	17	11	27	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43549783--43549861	22	3.6	22	72	6	79	18	25	21	34	1.96
43549779--43549883	44	2.4	44	93	0	174	18	20	22	38	1.94
43549805--43549883	22	3.6	22	75	0	86	16	18	25	39	1.91
43561290--43561466	31	5.7	31	95	0	311	28	24	16	29	1.96
43561684--43561909	26	8.8	26	83	2	289	29	21	22	26	1.99
43561684--43561909	52	4.4	51	90	3	321	29	21	22	26	1.99
43561680--43561909	103	2.3	103	88	3	349	30	21	21	26	1.98
43561959--43562065	20	5.3	20	89	2	162	29	17	10	42	1.83
43561959--43562065	40	2.7	40	92	2	180	29	17	10	42	1.83
43562890--43563023	27	4.9	27	73	10	110	32	6	18	42	1.76
43562980--43563103	27	4.6	27	81	7	119	28	8	21	41	1.83
43562980--43563118	54	2.6	54	80	7	158	28	10	22	38	1.86
43563108--43563251	27	5.3	27	91	0	216	38	9	24	27	1.86
43563092--43563265	81	2.2	80	76	4	206	37	9	21	31	1.86
43566715--43566813	28	3.5	28	87	4	119	27	15	27	30	1.96
43574569--43574740	31	5.5	31	95	0	308	28	25	16	29	1.97
43574958--43575157	26	7.8	26	86	1	280	28	22	22	27	1.99
43574958--43575157	51	3.9	52	90	2	307	28	22	22	27	1.99
43574958--43575157	77	2.6	77	87	2	278	28	22	22	27	1.99
43575207--43575313	20	5.3	20	87	2	153	28	17	11	42	1.84
43575207--43575313	40	2.7	40	91	2	171	28	17	11	42	1.84
43576842--43577012	93	1.8	93	83	2	227	22	21	26	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43579608--43579675	15	4.6	15	83	3	84	11	17	11	58	1.62
43579599--43579677	29	2.7	30	82	9	99	11	17	13	56	1.66
43582045--43582212	46	3.6	46	79	13	209	20	21	29	28	1.98
43582041--43582212	93	1.8	93	96	0	317	20	21	29	27	1.98
43584092--43584198	27	3.9	28	72	13	89	32	5	16	44	1.71
43584154--43584275	26	4.7	26	82	4	138	29	7	19	43	1.78
43584154--43584275	53	2.3	52	80	9	140	29	7	19	43	1.78
43584181--43584302	26	4.6	27	77	10	92	28	9	19	42	1.82
43584157--43584308	79	1.9	79	81	7	184	29	9	17	43	1.80
43584298--43584373	27	2.9	25	77	14	73	40	9	21	28	1.84
43584307--43584393	27	3.3	27	85	6	108	39	8	25	27	1.84
43584307--43584393	26	3.3	26	84	6	97	39	8	25	27	1.84
43590278--43590395	41	3.1	41	60	28	98	32	17	28	21	1.96
43590246--43590409	71	2.3	71	100	0	328	35	17	28	18	1.94
43593800--43593967	40	4.2	40	82	1	185	24	26	22	26	2.00
43601792--43601958	40	4.2	40	82	2	185	24	26	22	26	2.00
43609752--43609897	40	3.7	40	84	0	175	24	27	21	26	2.00
43615453--43615610	68	2.3	68	96	0	289	24	29	14	31	1.94
43615453--43615636	68	2.7	67	90	5	246	23	28	14	33	1.94
43625146--43625202	26	2.2	26	83	3	69	28	19	17	35	1.94
43639422--43639573	40	3.8	40	77	8	132	23	23	27	25	2.00
43641785--43641927	40	3.6	38	83	5	142	25	22	28	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43645749--43645787	19	2.1	19	85	9	53	33	15	10	41	1.81
43658410--43658436	13	2.1	13	100	0	54	44	0	14	40	1.46
43669199--43669294	28	3.4	28	76	9	88	27	30	13	29	1.94
43669524--43669563	16	2.5	16	83	0	53	7	20	22	50	1.73
43672516--43672577	31	2.0	31	100	0	124	35	16	9	38	1.81
43674634--43674708	36	2.1	37	97	2	143	36	13	28	22	1.92
43677689--43677748	30	2.0	30	100	0	120	30	26	3	40	1.72
43681027--43681090	3	21.3	3	100	0	128	0	32	0	67	0.91
43690286--43690340	27	2.0	28	82	10	69	47	0	9	43	1.35
43690627--43690689	31	2.0	31	100	0	126	15	6	28	49	1.69
43691160--43691199	13	2.9	14	85	11	55	72	2	2	22	1.09
43691349--43691407	28	2.1	28	90	0	91	59	3	0	37	1.14
43692412--43692468	25	2.3	25	90	0	96	14	26	21	38	1.91
43695034--43695421	96	4.2	96	77	9	390	24	25	19	30	1.98
43695112--43695378	85	3.0	85	78	10	264	24	23	19	31	1.98
43695067--43695439	133	2.7	135	85	5	464	24	24	20	31	1.98
43695034--43695421	48	8.3	47	78	10	343	24	25	19	30	1.98
43704476--43704566	37	2.4	37	92	1	155	24	32	18	24	1.97
43704662--43705014	49	7.4	49	91	5	571	29	32	9	29	1.88
43704683--43704960	89	3.0	89	88	9	439	29	33	8	28	1.87
43704662--43705014	138	2.5	142	90	5	518	29	32	9	29	1.88
43709764--43709837	29	2.6	29	95	0	139	27	14	31	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43709821--43709895	28	2.6	28	78	2	87	22	20	36	21	1.96
43709764--43709895	58	2.3	57	80	3	131	25	17	33	24	1.96
43717637--43717710	29	2.6	29	95	0	139	27	14	31	27	1.95
43717694--43717768	28	2.6	28	78	2	87	22	20	36	21	1.96
43717637--43717768	58	2.3	57	80	3	131	25	17	33	24	1.96
43719336--43719528	29	6.7	29	96	0	332	24	32	16	26	1.96
43719702--43719946	40	6.1	40	95	0	346	24	26	20	28	1.99
43723144--43723313	40	4.2	40	84	3	225	25	24	28	21	1.99
43727265--43727434	40	4.2	40	84	3	225	25	24	28	21	1.99
43735361--43735570	40	5.2	40	87	2	305	25	24	28	21	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378