Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr01 113035596 
Parameters: 2 7 7 80 10 50 1000
Length:  113035596

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   

This is table  351  of  378  ( 45343 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105598665--105598703
2
19.5
2
100
0
78
0
48
0
51
1.00
105598703--105598729
2
13.5
2
100
0
54
48
0
0
51
1.00
105599203--105599265
25
2.5
25
89
0
90
30
19
39
11
1.86
105602075--105602249
46
3.8
46
79
13
205
29
29
20
20
1.97
105602083--105602253
93
1.8
93
92
0
288
29
29
20
20
1.98
105604906--105604989
40
2.1
40
82
8
100
23
22
16
36
1.94
105605160--105605210
15
3.3
15
78
8
50
43
0
1
54
1.11
105611779--105611858
38
2.2
36
86
8
108
45
25
2
27
1.66
105612013--105612065
21
2.5
21
81
0
61
28
0
20
50
1.48
105612028--105612086
28
2.1
28
87
6
84
27
0
22
50
1.49
105612048--105612096
21
2.3
23
79
13
59
30
0
24
44
1.54
105612458--105612561
41
2.5
41
80
6
120
20
12
24
43
1.86
105614784--105614809
12
2.2
12
100
0
52
7
15
30
46
1.74
105614833--105615082
41
6.1
40
88
5
304
31
22
24
21
1.98
105615695--105615743
24
2.0
24
96
0
89
53
0
2
44
1.12
105618057--105618100
23
1.9
23
90
0
70
22
9
20
47
1.78
105620554--105620823
42
6.4
42
82
5
303
24
17
28
29
1.97
105620554--105620830
85
3.3
84
85
5
351
26
16
28
28
1.97
105621309--105621394
7
12.6
7
79
9
97
47
37
0
15
1.45
105621309--105621394
29
3.1
28
85
8
115
47
37
0
15
1.45
105621419--105622244
23
36.0
23
73
9
528
33
5
22
38
1.77
105621549--105622061
230
2.2
229
91
1
823
33
5
22
37
1.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105621549--105622244
230
3.0
230
86
4
732
33
5
23
37
1.77
105622881--105623101
42
5.2
42
82
3
237
21
16
29
32
1.95
105623843--105623916
36
2.1
36
86
0
103
25
20
24
29
1.99
105632527--105632560
2
17.0
2
93
0
59
50
2
47
0
1.16
105632955--105632981
2
13.5
2
100
0
54
51
0
0
48
1.00
105633253--105633299
20
2.5
19
80
13
62
65
0
0
34
0.93
105633253--105633299
17
2.5
19
83
10
62
65
0
0
34
0.93
105635875--105635920
16
2.9
15
84
9
56
71
4
23
0
1.03
105645421--105645472
19
2.9
17
83
10
68
38
9
17
34
1.82
105645431--105645501
22
3.4
21
81
11
74
33
7
18
40
1.77
105645444--105645501
22
2.7
21
86
7
80
34
5
18
41
1.73
105648492--105648526
10
3.5
10
88
0
52
68
0
0
31
0.90
105651609--105651718
42
2.6
42
94
0
193
51
3
6
38
1.45
105651746--105652061
125
2.5
125
88
3
465
35
17
18
29
1.93
105655625--105655666
18
2.3
18
87
0
66
45
7
28
19
1.76
105656278--105656302
7
3.6
7
100
0
50
60
12
0
28
1.32
105657464--105657513
11
4.9
10
86
11
66
42
0
28
30
1.56
105657464--105657514
21
2.4
21
87
9
68
41
0
29
29
1.57
105662181--105662351
66
2.6
66
82
5
195
32
25
14
27
1.95
105662286--105662360
30
2.5
30
84
4
98
29
21
18
30
1.97
105670758--105670819
21
2.9
21
81
13
72
29
25
0
45
1.54
105670781--105670840
21
2.9
21
82
2
59
28
25
1
45
1.63
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105670758--105670826
32
2.1
33
82
12
81
26
27
1
44
1.63
105671983--105672013
7
4.4
7
100
0
62
29
0
12
58
1.35
105671972--105672013
21
2.0
22
86
13
61
28
4
11
54
1.57
105673437--105673567
46
2.8
46
88
3
192
31
25
22
20
1.98
105680768--105680895
46
2.8
46
86
3
177
32
26
20
20
1.97
105683791--105684220
126
3.4
126
88
1
621
26
18
17
37
1.93
105684248--105684324
26
2.8
26
77
15
75
42
11
1
44
1.49
105684329--105684367
16
2.4
16
86
4
51
48
33
0
17
1.48
105689682--105689837
57
2.7
56
80
10
181
41
1
3
54
1.24
105690004--105690038
16
2.2
16
90
10
54
28
22
0
48
1.51
105700528--105700579
26
2.0
26
81
7
61
0
26
1
71
0.97
105700532--105700602
21
3.3
22
78
3
74
1
32
2
63
1.18
105700532--105700571
10
3.9
10
87
6
53
0
25
2
72
0.97
105701507--105701535
2
14.5
2
100
0
58
48
0
0
51
1.00
105704517--105704611
50
1.9
50
88
0
145
36
16
12
33
1.87
105708397--105708457
7
8.7
7
77
0
68
42
9
0
47
1.36
105708398--105708457
21
2.9
21
80
7
77
43
10
0
46
1.37
105709376--105709404
3
9.7
3
100
0
58
65
0
0
34
0.93
105712368--105712411
21
2.0
22
83
12
56
9
9
2
79
1.02
105712433--105712466
8
4.2
8
84
0
50
58
2
0
38
1.13
105716166--105716223
30
1.9
30
93
6
100
55
6
0
37
1.27
105717090--105717138
3
17.3
3
76
19
52
63
0
36
0
0.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105717171--105717201
6
5.2
6
92
0
53
80
0
19
0
0.71
105717171--105717237
12
5.4
12
76
13
64
71
0
28
0
0.86
105717166--105717230
26
2.5
26
80
9
71
70
0
29
0
0.87
105718175--105718222
15
3.2
15
77
11
53
70
0
2
27
0.98
105717655--105718485
143
5.9
141
86
7
1093
58
8
6
26
1.52
105718353--105718592
111
2.2
107
83
10
299
59
9
5
25
1.51
105718210--105718742
251
2.1
255
87
8
789
58
7
6
27
1.49
105718480--105719040
145
3.9
143
84
10
690
57
6
6
29
1.48
105725255--105725299
25
1.9
25
86
13
69
2
26
0
71
0.98
105725387--105725445
27
2.2
27
90
0
100
8
40
30
20
1.82
105726637--105726663
14
1.9
14
100
0
54
18
0
0
81
0.69
105731141--105731173
12
2.8
12
86
13
50
0
18
0
81
0.68
105731741--105731789
3
16.3
3
100
0
98
32
0
0
67
0.91
105731892--105731929
15
2.3
18
86
13
55
26
2
7
63
1.35
105731872--105731948
40
1.9
40
81
5
93
29
1
7
61
1.32
105731912--105731987
22
3.3
23
68
18
61
32
5
5
56
1.44
105732081--105732146
9
8.0
8
73
17
55
37
0
4
57
1.19
105732083--105732146
16
3.9
17
79
6
69
37
0
4
57
1.19
105732090--105732169
42
2.0
42
82
9
103
33
1
6
58
1.31
105732241--105732329
21
4.4
19
73
8
70
37
3
2
57
1.28
105732358--105732408
21
2.2
24
83
10
63
33
1
0
64
1.05
105734581--105734640
31
1.9
31
86
6
86
70
1
10
18
1.24
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105734635--105734679
17
2.6
17
89
6
65
66
0
11
22
1.22
105734640--105734694
18
3.1
18
86
5
67
61
0
12
25
1.31
105734762--105735068
14
21.9
14
71
16
101
62
1
6
29
1.29
105734760--105735230
3
155.0
3
72
12
302
61
1
7
29
1.32
105735837--105735873
2
18.5
2
100
0
74
51
0
0
48
1.00
105740230--105740286
24
2.5
22
83
10
87
15
3
14
66
1.38
105746415--105746466
20
2.5
20
84
3
77
26
15
11
46
1.80
105754012--105754042
15
2.1
15
93
0
53
41
6
22
29
1.78
105757851--105757979
44
2.9
45
86
6
181
27
19
7
44
1.78
105769881--105769924
19
2.3
19
80
0
52
50
0
0
50
1.00
105786606--105786637
2
16.0
2
100
0
64
50
0
0
50
1.00
105795773--105795809
19
2.1
19
85
10
51
45
2
0
51
1.15
105796292--105796354
32
2.0
32
84
6
83
30
11
19
39
1.86
105798219--105798272
5
10.0
5
78
21
56
22
3
0
74
0.98
105798219--105798272
16
3.3
15
78
21
56
22
3
0
74
0.98
105798274--105798428
21
8.0
20
66
21
71
41
0
3
54
1.19
105798309--105798415
35
3.1
35
89
6
141
40
0
2
57
1.14
105798319--105798413
35
2.7
35
95
1
165
40
0
3
56
1.15
105798378--105798430
22
2.4
22
90
6
81
39
0
0
60
0.97
105798376--105798448
21
3.4
22
83
9
89
47
0
0
52
1.00
105798496--105798537
18
2.2
19
87
8
59
38
0
2
59
1.10
105798497--105798574
31
2.4
33
80
16
85
34
1
3
60
1.23
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105798628--105798653
13
2.0
13
100
0
52
46
0
0
53
1.00
105798630--105798694
28
2.3
29
81
7
80
46
0
0
53
1.00
105802064--105802157
30
3.1
29
75
14
93
36
21
17
25
1.94
105804480--105804517
17
2.2
17
95
0
67
36
2
0
60
1.11
105804366--105804539
80
2.2
77
81
6
206
39
4
3
52
1.37
105804568--105804635
19
3.4
20
67
26
54
54
1
1
42
1.18
105804748--105804777
15
1.9
16
93
6
53
43
3
0
53
1.17
105807742--105807775
17
2.0
17
88
0
50
29
0
8
61
1.26
105808175--105808205
12
2.6
12
94
0
53
74
0
25
0
0.82
105809145--105809241
39
2.5
38
81
5
115
22
22
28
25
1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378