Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr01 113035596 
Parameters: 2 7 7 80 10 50 1000
Length:  113035596

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   

This is table  346  of  378  ( 45343 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104396355--104396498
44
3.3
44
70
14
136
19
23
21
35
1.96
104396264--104396546
86
3.3
86
85
3
284
20
22
19
37
1.94
104396626--104397084
179
2.6
179
96
0
839
26
20
17
34
1.95
104397015--104397211
43
4.6
43
77
8
186
19
23
21
35
1.96
104397052--104397211
86
1.9
85
85
3
223
18
23
21
35
1.96
104398084--104398111
1
28.0
1
100
0
56
0
0
0
100
0.00
104406756--104406921
35
4.6
35
86
5
208
33
24
10
30
1.90
104406751--104406921
74
2.4
73
86
6
233
33
23
11
30
1.90
104410211--104410369
80
2.0
80
95
2
284
27
25
21
26
1.99
104411294--104411400
43
2.5
42
78
3
115
33
22
14
29
1.93
104413867--104413937
11
6.6
10
72
13
52
2
22
4
70
1.18
104413860--104413918
29
2.0
29
83
6
75
0
25
5
69
1.09
104413916--104413946
12
2.7
11
90
9
53
9
16
0
74
1.07
104414214--104414242
13
2.1
14
93
6
51
48
6
0
44
1.29
104416696--104416745
25
2.0
25
100
0
100
36
16
28
20
1.93
104419513--104419556
23
1.9
23
86
9
63
59
4
0
36
1.18
104435011--104435059
25
2.0
25
84
4
64
63
8
0
28
1.23
104435023--104435087
25
2.9
23
82
15
75
66
9
0
24
1.21
104435049--104435087
19
2.0
20
95
5
71
71
10
0
17
1.12
104436093--104436137
17
2.6
17
82
6
56
4
11
0
84
0.76
104436093--104436129
11
3.4
11
92
0
56
2
8
0
89
0.58
104436781--104436810
11
2.7
11
94
0
51
40
0
3
56
1.16
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104436783--104437096
3
106.3
3
68
11
89
30
9
0
59
1.34
104436827--104436906
41
2.0
41
85
5
108
30
10
1
58
1.38
104436918--104437013
22
4.3
23
70
13
67
29
8
0
62
1.24
104436920--104437096
30
5.9
30
74
13
114
28
8
0
62
1.24
104436953--104437071
26
4.3
26
77
16
107
28
8
0
63
1.24
104436931--104437096
89
1.9
85
83
8
215
28
8
0
62
1.24
104436953--104437074
20
6.6
20
68
20
70
28
8
0
63
1.23
104437136--104437168
2
17.0
2
93
6
59
48
0
0
51
1.00
104439894--104439985
44
2.1
44
100
0
184
47
14
19
18
1.82
104449002--104449679
87
7.7
87
90
2
957
35
20
22
21
1.96
104449002--104449751
175
4.3
175
88
3
978
35
20
22
21
1.96
104451388--104451430
18
2.5
17
80
3
50
27
11
4
55
1.55
104451520--104451820
3
104.0
3
67
14
73
30
9
0
59
1.35
104451571--104451650
41
2.0
41
85
5
108
30
10
1
58
1.38
104451666--104451709
22
2.0
21
83
12
54
20
2
0
77
0.88
104451632--104451771
60
2.4
58
75
13
135
28
10
0
60
1.30
104451734--104451803
29
2.4
27
82
13
86
27
7
0
65
1.18
104451676--104451803
20
6.5
20
71
17
90
27
7
0
65
1.18
104451865--104451900
2
18.0
2
100
0
72
50
0
0
50
1.00
104451975--104452009
18
1.9
18
88
0
52
22
8
8
60
1.54
104456029--104456079
17
3.1
16
75
25
52
58
1
0
39
1.09
104456024--104456088
22
3.0
22
69
13
53
55
1
1
41
1.18
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104456462--104456505
22
2.0
22
90
0
70
50
0
0
50
1.00
104456530--104456560
15
2.0
16
93
6
55
61
0
0
38
0.96
104456599--104456655
15
3.5
15
71
17
51
49
1
1
47
1.22
104457114--104457151
14
2.7
14
91
0
58
31
18
10
39
1.85
104459861--104459905
23
1.9
24
86
4
65
33
40
11
15
1.83
104460783--104460882
18
5.2
20
67
13
59
40
3
6
51
1.42
104460982--104461023
19
2.2
20
86
4
59
30
2
2
64
1.19
104461969--104462027
30
2.1
28
81
12
68
71
6
1
20
1.18
104465697--104465760
7
8.7
7
76
10
65
57
1
0
40
1.08
104465697--104465773
37
2.1
38
82
2
93
58
1
3
36
1.25
104467278--104467321
13
3.5
13
78
3
54
52
0
0
47
1.00
104467280--104467316
17
2.2
17
90
0
56
48
0
0
51
1.00
104467478--104467512
2
17.5
2
100
0
70
51
0
0
48
1.00
104469454--104469516
31
2.0
31
84
6
81
39
4
4
50
1.44
104469936--104469985
20
2.5
20
83
3
57
48
2
0
50
1.12
104480366--104480517
22
7.0
21
61
13
56
49
11
1
36
1.51
104480366--104480517
44
3.5
44
91
0
250
49
11
1
36
1.51
104480603--104480641
19
1.9
19
90
10
60
64
0
7
28
1.21
104480603--104480690
21
4.0
21
76
16
72
64
0
10
25
1.24
104480548--104480796
97
2.6
98
89
8
363
63
0
13
22
1.34
104480783--104480833
6
8.8
6
85
6
61
58
0
23
17
1.38
104480783--104480837
17
3.2
17
85
12
76
61
0
21
16
1.34
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104480783--104480846
11
5.6
11
77
17
51
64
0
20
15
1.30
104480747--104480843
17
5.6
17
71
7
52
64
0
16
18
1.28
104480980--104481044
24
2.7
25
81
9
82
46
1
7
44
1.41
104481100--104481157
20
2.8
19
82
10
62
62
0
13
24
1.32
104481224--104481286
5
11.4
5
75
18
54
52
0
20
26
1.47
104481247--104481284
18
2.1
19
90
5
60
47
0
23
28
1.52
104481312--104481377
17
3.9
17
84
6
80
66
3
15
15
1.37
104481338--104481391
18
3.0
17
86
10
72
70
0
9
20
1.14
104481308--104481378
33
2.1
34
89
2
108
66
2
14
16
1.37
104481309--104481388
18
4.5
18
77
15
69
63
2
13
20
1.41
104481338--104481391
17
3.1
17
84
7
72
70
0
9
20
1.14
104481384--104481416
6
5.8
6
89
10
52
54
0
27
18
1.44
104483984--104484311
91
3.6
90
82
2
408
53
14
6
25
1.65
104484460--104484661
112
1.8
110
82
6
264
33
20
18
27
1.96
104492047--104492110
12
4.3
15
70
21
53
73
7
14
4
1.22
104495558--104495583
2
13.0
2
100
0
52
50
0
0
50
1.00
104496473--104496521
24
2.0
24
96
0
89
42
6
16
34
1.73
104498238--104498308
37
1.9
37
94
0
124
30
14
29
25
1.94
104499224--104499272
21
2.3
22
79
13
57
51
0
2
46
1.12
104499905--104499929
13
1.9
13
100
0
50
40
12
0
48
1.40
104502290--104502315
2
13.0
2
100
0
52
50
0
0
50
1.00
104511564--104511596
3
11.0
3
93
0
57
30
33
0
36
1.58
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104511553--104511613
9
6.8
9
80
12
63
22
34
1
40
1.64
104516766--104516820
17
3.4
17
78
19
71
43
1
0
54
1.10
104516795--104516840
19
2.6
18
79
6
58
56
0
0
43
0.99
104518994--104519052
22
2.6
23
84
10
68
55
5
5
33
1.43
104522947--104523088
67
2.1
67
98
0
275
47
10
15
26
1.77
104524230--104524279
26
1.9
26
87
0
73
38
4
6
52
1.45
104526097--104526143
14
3.3
15
77
11
55
53
0
4
42
1.20
104528309--104528418
44
2.5
44
87
3
148
30
22
13
33
1.93
104532807--104532935
44
2.8
45
82
4
152
34
13
24
27
1.93
104540192--104540320
44
2.8
45
82
4
152
34
13
24
27
1.93
104544203--104544305
44
2.3
45
88
3
145
31
22
12
33
1.91
104545807--104545850
22
2.0
22
100
0
88
31
13
18
36
1.90
104545810--104545857
22
2.2
22
92
0
78
39
12
16
31
1.86
104547337--104547380
20
2.2
20
88
4
63
34
0
0
65
0.93
104547419--104547505
25
3.3
25
79
11
86
52
3
2
41
1.31
104547493--104547554
30
2.0
31
81
6
72
64
3
1
30
1.19
104552877--104552919
21
1.9
23
86
13
63
32
4
0
62
1.15
104552973--104553003
13
2.3
14
94
5
55
41
0
6
51
1.27
104553204--104553338
12
11.4
12
69
24
67
37
4
2
56
1.32
104553198--104553295
45
2.2
43
75
13
101
37
4
1
57
1.25
104559610--104559712
44
2.3
45
83
3
118
29
22
14
33
1.94
104559632--104559717
46
1.9
44
90
4
136
29
24
13
32
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104567954--104568087
71
1.9
71
87
0
196
29
15
23
30
1.96
104567864--104568775
160
5.8
160
87
6
1274
27
17
21
33
1.96
104568114--104568247
71
1.9
71
87
0
196
29
15
23
30
1.96
104568274--104568407
71
1.9
71
90
0
214
31
16
22
29
1.96
104568442--104568681
73
3.3
73
91
3
369
27
16
22
32
1.96
104568434--104568709
73
3.8
72
87
4
351
27
16
23
32
1.96
104568731--104568877
53
2.9
50
82
11
183
29
15
20
34
1.94
104568932--104569118
74
2.6
73
82
4
218
27
18
22
31
1.97
104570548--104570572
7
3.6
7
100
0
50
0
60
0
40
0.97
104571052--104571094
21
1.9
23
86
13
63
32
4
0
62
1.15

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378