Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr01 113035596 
Parameters: 2 7 7 80 10 50 1000
Length:  113035596

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   

This is table  361  of  378  ( 45343 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108220108--108220137
6
5.0
6
100
0
60
0
66
0
33
0.92
108220109--108220149
18
2.3
18
86
0
55
7
60
0
31
1.24
108224716--108225057
170
2.0
171
98
0
659
39
10
24
25
1.87
108226213--108226245
15
2.3
15
84
5
50
87
0
12
0
0.53
108233797--108233823
13
2.1
13
100
0
54
14
0
14
70
1.17
108244397--108244594
72
2.7
74
78
12
185
58
4
4
33
1.36
108250788--108250954
75
2.3
75
82
7
193
33
24
10
31
1.90
108250789--108250954
35
4.6
35
78
8
163
33
24
10
31
1.90
108258174--108258283
6
17.8
6
77
9
51
43
3
40
12
1.60
108258240--108258283
3
14.7
3
80
0
52
56
6
34
2
1.38
108258240--108258283
12
3.7
12
87
0
61
56
6
34
2
1.38
108260490--108260569
31
2.6
31
86
4
108
18
25
8
47
1.77
108262077--108262102
3
8.7
3
100
0
52
0
0
30
69
0.89
108267323--108267365
18
2.3
19
76
4
52
6
4
6
81
0.98
108267456--108267517
21
3.0
20
81
13
72
40
0
1
58
1.08
108267456--108267590
22
5.8
22
72
18
96
40
1
2
56
1.21
108267462--108267532
20
3.5
20
80
17
76
45
0
0
54
0.99
108267621--108267710
45
2.0
45
95
0
162
31
10
12
46
1.74
108268109--108268148
2
20.0
2
100
0
80
50
0
0
50
1.00
108269000--108269060
20
3.0
20
85
4
86
63
0
3
32
1.10
108269509--108269573
20
3.2
20
69
16
62
38
7
3
50
1.47
108269500--108269584
40
2.1
41
93
2
145
36
7
3
52
1.46
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108269508--108269595
40
2.2
40
85
4
115
37
6
3
52
1.45
108273589--108273632
22
2.0
22
82
8
54
52
18
6
22
1.69
108278671--108278791
44
2.8
44
86
5
163
46
9
15
28
1.78
108280930--108280987
30
1.9
30
89
0
89
34
3
22
39
1.71
108290962--108291001
21
1.9
21
89
0
62
22
27
20
30
1.98
108294975--108295145
39
4.3
40
88
3
215
25
20
28
25
1.99
108294998--108295153
79
2.0
79
82
7
192
25
20
28
26
1.99
108298654--108298773
51
2.4
51
89
0
177
25
21
14
38
1.91
108299914--108299952
16
2.4
16
91
0
60
0
30
0
69
0.89
108299977--108300021
18
2.5
18
85
7
56
6
17
0
75
1.01
108300021--108300063
2
22.0
2
95
4
79
48
0
0
51
1.00
108308527--108308567
2
21.0
2
95
5
75
51
0
0
48
1.00
108309356--108309422
33
2.0
33
97
0
125
38
23
13
23
1.91
108309941--108310012
31
2.3
30
83
6
99
23
8
11
56
1.61
108314221--108314264
23
1.9
23
95
0
79
27
11
11
50
1.72
108318682--108318712
3
10.3
3
92
0
53
3
32
0
64
1.09
108321692--108321755
24
2.7
24
100
0
128
10
28
23
37
1.89
108324343--108324389
21
2.2
22
85
11
71
57
8
0
34
1.29
108324379--108324420
17
2.5
17
81
11
50
52
4
0
42
1.22
108327649--108327688
19
2.2
18
86
4
53
50
0
10
40
1.36
108327787--108327815
15
1.9
15
100
0
58
41
0
0
58
0.98
108327825--108327867
2
21.5
2
100
0
86
51
0
0
48
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108327715--108327851
64
2.1
64
80
11
145
40
0
6
51
1.33
108328736--108328773
17
2.2
17
86
9
51
7
26
2
63
1.35
108330075--108330122
20
2.5
20
78
18
57
29
18
25
27
1.98
108332432--108332525
19
4.8
20
80
16
106
10
27
22
39
1.87
108332432--108332552
39
3.1
39
89
1
170
11
27
23
38
1.89
108339663--108339773
47
2.4
47
84
6
154
25
16
23
35
1.95
108346917--108347027
47
2.4
47
84
6
154
25
16
23
35
1.95
108350881--108351045
50
3.3
50
82
5
199
30
10
18
40
1.85
108351169--108351220
26
2.0
26
100
0
104
23
15
15
46
1.83
108351614--108351656
21
2.0
21
95
0
77
23
6
16
53
1.67
108355700--108355730
16
1.9
16
93
0
53
45
19
0
35
1.51
108363189--108363241
25
2.1
25
100
0
106
47
18
0
33
1.49
108363238--108363273
2
18.0
2
100
0
72
50
0
0
50
1.00
108368398--108368500
44
2.3
45
83
3
118
31
23
12
33
1.92
108373374--108373435
32
1.9
33
90
3
99
54
6
1
37
1.36
108373411--108373443
14
2.4
14
90
5
50
57
3
0
39
1.14
108375820--108375851
14
2.1
16
88
11
50
34
6
3
56
1.40
108375834--108375934
31
3.2
30
78
12
96
32
6
2
57
1.40
108375839--108375919
34
2.5
33
80
11
96
35
6
2
55
1.38
108379934--108380161
46
5.0
46
90
1
314
21
25
14
37
1.92
108384166--108384229
22
2.7
24
75
20
62
42
7
7
42
1.63
108384845--108384874
6
5.2
6
92
8
53
33
0
16
50
1.46
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108384845--108384874
11
2.6
12
89
10
53
33
0
16
50
1.46
108384952--108384990
18
2.0
20
90
9
64
46
0
0
53
1.00
108391811--108391851
21
2.0
21
85
9
57
19
12
29
39
1.88
108392346--108392474
43
3.0
43
96
1
233
34
6
4
53
1.49
108392507--108392550
23
2.0
21
86
8
61
36
6
2
54
1.40
108392744--108392789
24
1.9
24
82
8
58
50
4
4
41
1.42
108395577--108395650
38
1.9
38
86
5
105
37
2
4
55
1.33
108401051--108401096
21
2.2
21
84
0
56
63
10
2
23
1.38
108401293--108401322
10
2.9
10
95
5
51
20
16
0
63
1.31
108401360--108401412
20
2.7
19
80
16
63
26
7
0
66
1.18
108406217--108406246
11
2.6
12
89
10
53
0
13
0
86
0.57
108406911--108406942
10
3.2
10
100
0
64
37
0
0
62
0.95
108406902--108406942
20
2.0
20
86
9
57
36
4
0
58
1.20
108406919--108406966
25
2.0
24
91
4
78
35
2
0
62
1.07
108406929--108406963
15
2.2
16
90
5
54
34
2
0
62
1.10
108406915--108406975
9
6.9
9
74
25
51
34
3
0
62
1.12
108406918--108406972
25
2.2
25
83
6
76
32
3
0
63
1.12
108406910--108406976
10
6.0
11
75
20
50
34
2
0
62
1.10
108407071--108407134
24
2.7
24
80
7
67
37
9
4
48
1.56
108407266--108407308
2
22.0
2
95
4
79
51
0
0
48
1.00
108407670--108407711
2
21.5
2
95
4
77
47
0
0
52
1.00
108408442--108408499
28
2.1
28
96
0
107
36
17
12
34
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108419310--108419340
2
15.5
2
93
0
53
48
0
3
48
1.17
108419974--108420015
15
2.7
15
82
17
59
0
9
4
85
0.72
108421731--108421923
79
2.5
76
90
5
298
35
16
18
29
1.93
108421886--108422278
88
4.4
89
80
5
409
26
15
19
38
1.91
108423947--108423981
15
2.2
16
90
5
54
34
2
0
62
1.10
108424334--108424371
2
19.0
2
100
0
76
50
0
0
50
1.00
108424404--108424451
21
2.3
21
88
0
69
29
12
0
58
1.35
108424400--108424474
33
2.2
34
86
6
100
28
13
0
58
1.35
108424418--108424477
21
2.8
20
82
9
66
28
15
0
56
1.39
108424544--108424578
2
17.5
2
100
0
70
48
0
0
51
1.00
108424623--108424670
25
1.9
25
82
0
60
33
10
10
45
1.72
108424672--108424705
2
17.5
2
93
6
61
47
0
0
52
1.00
108426656--108426697
15
2.8
15
85
0
57
50
4
14
30
1.63
108433486--108433583
28
3.5
28
68
18
78
29
32
14
23
1.94
108433476--108433609
56
2.4
56
91
5
207
31
28
13
26
1.94
108433516--108433609
28
3.4
27
69
16
84
30
25
14
28
1.95
108443839--108443905
22
2.8
24
82
13
84
19
1
25
53
1.53
108447026--108447058
2
16.5
2
100
0
66
51
0
0
48
1.00
108452169--108452208
16
2.5
16
83
0
53
37
5
0
57
1.21
108452437--108452478
3
13.7
3
95
5
75
69
0
0
30
0.89
108452435--108452475
19
2.2
19
100
0
82
68
0
0
31
0.90
108453581--108453619
20
1.9
21
85
15
55
53
0
2
43
1.14
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108454706--108454791
30
2.9
30
92
0
136
27
3
12
55
1.53
108459060--108459128
31
2.1
31
84
7
84
40
5
8
44
1.59
108461464--108461488
13
1.9
13
100
0
50
32
8
8
52
1.60
108469120--108469155
18
1.9
19
88
5
56
16
22
0
61
1.35
108470667--108470720
25
2.2
25
96
0
99
38
22
12
25
1.90
108472871--108472963
43
2.2
44
92
3
154
51
13
6
27
1.66
108472985--108473024
19
2.2
18
86
4
53
42
15
2
40
1.60
108475840--108475867
7
4.0
7
100
0
56
57
14
14
14
1.66
108479720--108479812
43
2.2
44
90
3
145
50
13
7
27
1.69
108479834--108479873
19
2.2
18
90
4
62
42
17
2
37
1.63

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378