genome.fa.s1.2.7.7.80.10.50.1000.236.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr01 113035596 
Parameters: 2 7 7 80 10 50 1000
Length:  113035596

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   

This is table  236  of  378  ( 45343 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69939992--69940024	12	2.6	13	85	9	50	45	0	45	9	1.35
69946231--69946269	10	3.8	10	90	6	60	30	17	20	30	1.96
69946230--69946269	21	1.9	21	94	0	71	32	17	20	30	1.95
69946316--69946385	25	2.8	25	97	0	131	25	24	22	27	2.00
69946315--69946403	25	3.6	24	89	4	117	28	22	22	26	1.99
69948673--69949131	27	17.0	27	78	6	351	38	20	10	31	1.86
69948656--69949037	54	7.1	53	81	3	397	39	20	9	31	1.84
69949059--69949151	27	3.4	27	90	0	150	37	17	18	26	1.93
69949300--69949369	27	2.6	27	86	0	86	32	12	24	30	1.93
69949575--69949644	25	2.8	25	91	0	113	27	24	22	25	2.00
69952308--69952403	43	2.3	42	82	10	115	23	15	25	35	1.94
69956045--69956139	27	3.5	26	77	8	84	41	21	8	29	1.82
69956155--69956339	27	6.9	27	87	2	264	28	21	8	41	1.82
69956142--69956339	54	3.7	54	90	2	299	30	20	8	40	1.82
69956144--69956368	81	2.8	81	83	5	206	31	20	8	39	1.83
69956360--69956541	27	6.8	27	79	4	163	37	20	10	31	1.87
69956333--69956502	81	2.1	81	80	6	193	38	19	10	32	1.85
69956529--69956779	27	9.3	27	89	0	387	34	19	22	23	1.97
69956526--69956779	107	2.4	107	89	4	359	34	19	22	24	1.97
69956530--69956796	134	2.0	134	88	2	403	34	18	22	24	1.96
69957199--69957286	6	14.3	6	74	17	74	20	18	13	47	1.82
69957199--69957278	31	2.6	31	89	0	115	21	18	12	47	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69960816--69960875	20	3.0	20	90	0	84	35	21	20	23	1.96
69964985--69965024	21	1.9	21	89	0	62	27	2	27	42	1.68
69966172--69966217	10	4.6	10	86	0	65	26	21	30	21	1.99
69966172--69966217	20	2.3	20	96	0	83	26	21	30	21	1.99
69968143--69968318	46	3.8	46	79	12	216	20	21	29	28	1.98
69968140--69968311	93	1.8	93	96	0	317	20	21	29	27	1.98
69975723--69975898	46	3.8	46	79	12	216	20	21	29	28	1.98
69975720--69975891	93	1.8	93	96	0	317	20	21	29	27	1.98
69978865--69978908	22	2.0	22	81	0	52	29	4	15	50	1.64
69986759--69986872	40	2.8	40	81	0	138	25	27	23	23	2.00
69990239--69990271	12	2.6	13	85	9	50	9	45	0	45	1.35
69991340--69991432	28	3.3	28	93	3	152	35	29	6	29	1.82
69991537--69991616	27	2.9	28	74	7	83	21	25	21	32	1.98
69992997--69993154	41	3.9	39	75	14	128	26	29	22	22	1.99
69993037--69993140	40	2.6	40	89	1	145	27	27	21	23	1.99
69997863--69997952	40	2.2	40	88	0	126	32	25	22	20	1.98
69997828--69998015	80	2.3	80	78	13	199	26	23	26	22	2.00
69998074--69998104	14	2.2	14	100	0	62	32	16	16	35	1.91
69998374--69998399	8	3.2	8	100	0	52	0	23	15	61	1.33
70001728--70001813	37	2.3	37	97	0	163	23	31	19	25	1.98
70001858--70002127	48	5.6	48	98	0	513	31	27	8	33	1.86
70003636--70003660	13	1.9	13	100	0	50	36	16	16	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70010063--70010220	40	4.0	40	79	4	151	26	24	26	22	2.00
70010063--70010250	80	2.3	80	79	12	206	26	23	27	22	2.00
70010595--70010620	8	3.2	8	100	0	52	0	23	15	61	1.33
70017082--70017239	41	3.9	39	77	14	137	27	29	22	21	1.99
70017082--70017225	40	3.6	41	79	10	154	27	28	22	21	1.99
70020450--70020524	35	2.1	35	95	0	132	38	8	17	36	1.79
70023466--70023527	31	2.0	31	100	0	124	38	3	6	51	1.44
70023478--70023544	31	2.2	31	81	5	73	40	4	7	47	1.52
70025769--70026264	39	12.7	39	88	1	674	30	29	20	19	1.97
70029101--70029125	12	2.1	12	100	0	50	32	16	24	28	1.96
70032271--70032322	27	1.9	27	88	7	79	50	0	9	40	1.35
70033164--70033334	43	4.0	42	77	13	188	23	18	27	30	1.97
70039612--70039642	4	7.8	4	100	0	62	25	0	22	51	1.48
70057607--70057666	29	2.1	29	84	3	77	45	1	25	28	1.63
70058145--70058311	43	3.9	43	79	5	160	27	14	25	32	1.95
70062075--70062131	22	2.6	22	91	0	96	22	33	28	15	1.95
70070271--70070474	90	2.3	89	81	9	222	26	27	20	25	1.99
70070330--70070488	45	3.6	45	90	0	257	26	28	22	22	1.99
70077565--70077655	45	2.0	45	89	0	137	24	13	24	38	1.91
70081589--70081654	32	2.1	32	97	0	123	50	12	13	24	1.76
70090978--70091103	40	3.2	39	80	6	139	21	25	24	28	1.99
70090917--70091103	80	2.3	80	78	12	204	22	27	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70093585--70093622	19	2.0	19	85	10	51	13	23	42	21	1.88
70093857--70094056	27	7.4	27	83	6	226	33	18	22	26	1.96
70093857--70094055	54	3.7	54	86	0	272	33	18	22	26	1.96
70093857--70094056	81	2.5	80	85	6	260	33	18	22	26	1.96
70097484--70097691	40	5.2	39	82	3	202	25	25	23	25	2.00
70097484--70097690	80	2.6	80	82	3	238	25	26	23	25	2.00
70100446--70100549	32	3.0	32	80	9	100	27	23	12	36	1.91
70100428--70100532	39	2.7	39	95	1	185	27	22	12	37	1.90
70102147--70102330	40	4.6	40	95	2	318	25	27	23	24	2.00
70104879--70105062	40	4.6	40	95	2	318	25	27	23	24	2.00
70107597--70107814	40	5.5	40	92	2	343	24	27	23	23	2.00
70109714--70109791	11	7.6	11	72	16	78	34	19	10	35	1.85
70109722--70109778	9	5.9	9	73	15	51	35	21	8	35	1.84
70109714--70109790	20	3.8	20	94	0	136	35	19	10	35	1.86
70113034--70113177	40	3.6	40	79	10	136	23	22	27	26	2.00
70121043--70121183	40	3.5	40	79	9	137	23	24	27	24	2.00
70121578--70121668	43	2.1	43	84	9	116	25	16	23	35	1.95
70125316--70125410	27	3.5	26	77	8	84	41	21	8	29	1.82
70125415--70125610	27	7.3	27	87	2	243	30	20	8	40	1.81
70125413--70125610	54	3.7	54	86	2	272	30	20	8	40	1.81
70125599--70125675	27	2.9	26	80	3	73	45	22	5	27	1.73
70125631--70125812	27	6.8	27	82	4	181	38	20	9	30	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70125604--70125773	81	2.1	81	82	6	211	39	19	9	31	1.83
70125800--70126076	27	10.3	27	89	1	423	34	20	21	23	1.97
70125803--70126069	133	2.0	133	90	1	417	34	19	21	24	1.97
70126496--70126583	6	14.3	6	74	17	74	20	18	13	47	1.82
70126496--70126575	31	2.6	31	89	0	115	21	18	12	47	1.81
70129081--70129126	10	4.6	10	91	0	74	23	21	32	21	1.98
70129081--70129126	20	2.3	20	100	0	92	23	21	32	21	1.98
70131401--70131444	22	2.0	22	81	0	52	29	4	15	50	1.64
70133406--70133444	8	4.9	8	87	0	60	10	28	12	48	1.74
70140306--70140396	45	2.0	45	89	0	137	24	13	24	38	1.91
70144354--70144419	32	2.1	32	97	0	123	50	12	13	24	1.76
70149410--70149447	19	2.0	19	85	10	51	15	21	42	21	1.89
70149682--70149881	27	7.4	27	83	6	235	33	18	22	25	1.97
70149682--70149880	54	3.7	54	87	0	281	33	18	22	25	1.96
70149682--70149881	81	2.5	81	87	3	278	33	18	22	25	1.97
70150021--70150082	27	2.3	27	80	0	70	17	25	17	38	1.92
70150628--70150660	15	2.1	16	88	5	50	51	15	6	27	1.66
70153031--70153134	39	3.0	32	72	17	91	26	23	13	36	1.92
70153013--70153117	39	2.7	39	91	1	167	26	22	13	37	1.91
70154732--70154949	40	5.5	40	88	4	309	25	27	22	24	1.99
70157975--70158190	39	5.5	40	92	3	334	24	27	23	24	2.00
70157975--70158194	79	2.8	79	91	4	340	24	27	23	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70160091--70160168	11	7.6	11	72	16	78	34	19	10	35	1.85
70160099--70160155	9	5.9	9	73	15	51	35	21	8	35	1.84
70160091--70160167	20	3.8	20	94	0	136	35	19	10	35	1.86
70166392--70166637	27	9.2	27	83	2	237	33	17	22	26	1.96
70166413--70166611	107	1.9	107	86	0	290	33	17	22	26	1.96
70166392--70166630	107	2.2	107	81	0	273	33	18	22	25	1.96
70166392--70166630	53	4.5	54	82	2	286	33	18	22	25	1.96
70167000--70167085	32	2.7	32	96	0	154	27	26	26	18	1.98
70168034--70168175	48	3.0	48	85	0	194	26	19	29	24	1.99
70169792--70169921	29	4.5	29	77	6	113	24	17	32	25	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378