Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr01 113035596 
Parameters: 2 7 7 80 10 50 1000
Length:  113035596

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   

This is table  376  of  378  ( 45343 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
112306260--112306313
5
10.6
5
97
2
99
18
1
0
79
0.82
112309009--112309087
37
2.1
37
88
0
113
50
13
17
17
1.78
112308998--112309178
12
14.7
12
68
17
95
48
13
17
20
1.81
112309020--112309128
37
2.9
37
82
8
125
48
14
18
18
1.81
112309021--112309178
62
2.5
62
88
0
235
48
13
17
20
1.81
112309020--112309178
25
6.4
25
74
12
100
47
13
17
20
1.82
112309421--112309472
27
2.0
26
84
3
68
34
21
26
17
1.95
112309706--112310164
27
17.1
27
85
4
561
41
8
21
29
1.82
112310160--112310293
27
5.0
26
79
10
101
29
10
20
39
1.86
112310160--112310265
54
2.0
54
81
7
126
29
11
19
39
1.87
112310229--112310314
27
3.2
27
91
3
129
31
9
19
39
1.84
112310309--112310378
27
2.6
27
90
0
104
30
22
15
31
1.95
112310229--112310341
54
2.1
54
80
3
120
30
12
18
38
1.88
112311681--112311788
26
4.2
26
92
0
180
33
7
23
36
1.83
112316393--112316456
24
2.7
25
85
9
89
65
1
1
31
1.11
112316393--112316452
8
7.5
8
85
7
77
65
1
1
31
1.13
112316688--112316763
25
2.9
26
76
7
82
59
1
5
34
1.28
112317317--112317431
30
3.8
30
91
0
185
22
3
47
26
1.67
112317317--112317431
60
1.9
60
96
0
212
22
3
47
26
1.67
112318216--112318244
14
2.1
14
100
0
58
65
6
13
13
1.45
112318000--112318318
89
3.6
89
81
4
358
36
19
17
26
1.94
112318374--112318408
14
2.5
14
100
0
70
57
5
20
17
1.60
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
112318175--112319049
164
5.3
163
82
11
962
33
20
17
27
1.95
112318467--112318497
16
1.9
16
93
0
53
64
6
12
16
1.47
112318299--112318645
89
3.8
89
87
3
471
34
20
17
27
1.95
112318555--112318589
14
2.5
14
95
0
61
60
5
17
17
1.55
112317995--112319049
345
3.2
334
83
9
1172
34
20
17
27
1.95
112318753--112319032
75
3.7
76
92
2
449
28
22
17
31
1.96
112319923--112319947
9
2.8
9
100
0
50
88
0
0
12
0.53
112320576--112320634
28
2.1
28
100
0
118
16
11
25
45
1.82
112321255--112321316
27
2.3
27
91
0
97
27
16
16
40
1.89
112321272--112321422
54
2.8
54
86
2
160
29
9
19
41
1.83
112321270--112321422
81
1.9
81
86
5
220
30
9
19
40
1.83
112321299--112321422
27
4.6
27
85
2
169
30
7
20
41
1.79
112321406--112321476
27
2.6
27
75
4
72
29
7
26
36
1.83
112321299--112321422
54
2.3
54
92
0
203
30
7
20
41
1.79
112321296--112321449
81
1.9
81
79
2
175
31
7
21
38
1.82
112330467--112330502
12
3.0
12
83
0
54
44
2
22
30
1.67
112334049--112334096
16
3.1
15
90
6
69
64
2
2
31
1.16
112334045--112334096
8
6.5
8
82
8
61
65
1
1
30
1.14
112334044--112334100
24
2.4
24
79
5
71
64
1
3
29
1.20
112334331--112334406
25
2.9
26
76
7
82
59
1
5
34
1.28
112334959--112335073
30
3.8
30
91
0
185
22
3
48
25
1.66
112334959--112335073
60
1.9
60
98
0
221
22
3
48
25
1.66
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
112337118--112337175
29
2.0
29
96
0
107
15
37
8
37
1.78
112338968--112338993
7
3.7
7
100
0
52
46
0
0
53
1.00
112340787--112340961
87
2.0
87
100
0
350
20
20
19
39
1.93
112341004--112341072
26
2.7
26
93
4
115
21
11
2
63
1.40
112341315--112341371
27
2.0
30
86
10
84
29
8
1
59
1.38
112341329--112341375
10
4.5
11
82
17
57
27
8
0
63
1.23
112341423--112341480
3
19.0
3
80
16
66
29
3
1
65
1.19
112341648--112341727
3
26.7
3
100
0
160
32
0
0
67
0.91
112348768--112348816
24
2.0
24
100
0
98
53
0
4
42
1.20
112348863--112348897
2
17.5
2
100
0
70
48
0
0
51
1.00
112349653--112349704
14
3.8
13
77
12
52
59
3
1
34
1.27
112349865--112349912
24
2.0
24
83
4
60
25
39
4
31
1.74
112353866--112354092
43
5.3
42
78
5
206
26
18
25
29
1.98
112353907--112354088
85
2.1
86
84
1
231
27
19
24
28
1.99
112362229--112362407
42
4.3
42
91
0
268
43
16
25
14
1.86
112362462--112362654
74
2.6
75
91
1
307
25
8
26
39
1.85
112364050--112364110
30
2.0
30
90
6
97
55
9
6
27
1.57
112366948--112366973
13
2.0
13
100
0
52
84
0
0
15
0.62
112368690--112368766
9
8.6
9
92
0
127
44
19
10
25
1.83
112368778--112368827
14
3.5
14
81
10
57
20
0
2
78
0.86
112368784--112368822
20
2.0
20
94
0
69
17
0
2
79
0.84
112374452--112374504
24
2.1
25
83
13
65
60
0
11
28
1.31
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
112375414--112375503
44
2.0
46
86
4
130
31
6
26
35
1.82
112375608--112375731
58
2.1
58
85
2
160
51
3
0
44
1.23
112377589--112377641
2
26.5
2
100
0
106
50
0
0
49
1.00
112383395--112383624
117
2.0
118
92
0
381
28
30
17
22
1.97
112384377--112384506
42
3.2
41
85
5
165
21
11
35
31
1.89
112384594--112384665
5
14.0
5
77
13
58
77
0
4
18
0.92
112384597--112384657
29
2.1
30
87
3
88
77
0
4
18
0.95
112384595--112384666
7
11.7
6
80
12
51
79
0
4
16
0.89
112388343--112388390
20
2.5
20
86
3
62
64
2
6
27
1.28
112393172--112393382
25
8.7
25
84
5
231
20
24
18
36
1.95
112394296--112394332
13
2.8
14
80
16
51
56
0
13
29
1.37
112399375--112399463
3
29.3
3
74
6
72
28
5
2
64
1.28
112399709--112399960
3
82.7
3
79
10
192
30
8
2
58
1.41
112400191--112400245
27
2.0
27
100
0
110
21
7
10
60
1.55
112404806--112404842
18
2.0
19
94
5
67
16
8
27
48
1.74
112405090--112405146
24
2.4
24
87
0
78
35
7
10
47
1.65
112405797--112406032
110
2.2
109
91
3
384
40
20
16
22
1.91
112418175--112418215
21
2.0
21
90
0
64
19
29
21
29
1.98
112422879--112422911
3
11.0
3
100
0
66
66
0
0
33
0.92
112422965--112423034
5
14.2
5
77
16
51
75
2
4
17
1.08
112422930--112423034
32
3.4
30
73
21
85
72
4
3
19
1.18
112423001--112423036
11
3.0
13
80
19
51
80
0
0
19
0.71
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
112424954--112425027
33
2.3
33
88
11
109
40
0
8
51
1.32
112424972--112425047
31
2.4
32
84
8
93
43
0
9
47
1.35
112436834--112436872
19
2.0
21
85
10
55
41
2
15
41
1.61
112438685--112438712
7
4.0
7
100
0
56
28
14
0
57
1.38
112438699--112438762
31
2.1
31
93
0
110
25
21
14
39
1.91
112438954--112439073
24
5.0
24
90
3
170
26
22
22
28
1.99
112439124--112439183
20
3.0
20
90
0
102
33
20
11
35
1.88
112439226--112439273
25
1.9
25
86
0
69
25
16
25
33
1.96
112440513--112440723
27
7.8
27
83
6
230
40
7
22
29
1.82
112440513--112440750
54
4.4
54
82
6
250
38
7
23
30
1.83
112440513--112440750
81
2.9
81
84
4
277
38
7
23
30
1.83
112440513--112440750
27
8.8
27
81
5
221
38
7
23
30
1.83
112440648--112440924
27
10.3
27
82
5
179
33
9
20
37
1.84
112440595--112440849
81
3.2
80
78
6
212
36
9
20
34
1.85
112440718--112440924
81
2.6
81
80
5
206
30
8
21
40
1.82
112440801--112440941
27
5.3
26
84
2
138
31
7
19
41
1.78
112442643--112442670
13
2.2
13
100
0
56
32
21
7
39
1.80
112442706--112442739
18
1.9
17
88
5
50
47
32
0
20
1.51
112447548--112447575
13
2.2
13
100
0
56
32
21
7
39
1.80
112447611--112447644
18
1.9
17
88
5
50
47
32
0
20
1.51
112450127--112450158
2
16.0
2
100
0
64
50
0
0
50
1.00
112451113--112451141
14
2.1
14
100
0
58
51
13
6
27
1.66
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
112459196--112459368
93
1.9
93
88
2
267
28
30
20
20
1.98
112459189--112459364
46
3.8
46
76
11
171
30
29
19
20
1.97
112459240--112459383
46
3.1
45
71
11
121
29
28
20
21
1.98
112460911--112461300
41
9.6
40
80
6
410
32
25
19
23
1.98
112460911--112461287
81
4.6
82
83
5
444
32
24
19
23
1.98
112461611--112461681
7
10.0
7
73
3
52
46
32
0
21
1.51
112461604--112461671
21
3.2
21
78
0
73
50
26
0
23
1.50
112461836--112461921
43
2.0
42
88
4
129
26
4
26
41
1.75
112463651--112463686
18
1.9
19
88
5
56
50
2
25
22
1.63
112473444--112473573
41
3.2
39
70
15
102
36
19
21
22
1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378