genome.fa.s1.2.7.7.80.10.50.1000.175.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr01 113035596 
Parameters: 2 7 7 80 10 50 1000
Length:  113035596

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   

This is table  175  of  378  ( 45343 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50835183--50835435	47	5.4	47	89	0	389	33	8	30	27	1.87
50842897--50842936	13	3.1	13	100	0	80	15	32	37	15	1.88
50845689--50845758	27	2.6	27	95	2	122	30	27	14	28	1.95
50852921--50852990	27	2.6	27	95	2	122	30	27	14	28	1.95
50853970--50853999	15	1.9	16	93	6	53	36	13	0	50	1.42
50855854--50855914	30	2.0	30	83	0	77	31	22	8	37	1.84
50863323--50863388	34	1.9	34	93	0	114	34	16	19	28	1.94
50871958--50872109	40	3.8	40	86	5	175	24	28	23	23	2.00
50871929--50872109	40	4.5	40	82	4	170	24	27	24	23	2.00
50875139--50875299	38	4.2	38	82	4	173	22	22	22	31	1.98
50875129--50875310	76	2.4	78	79	8	194	22	20	23	32	1.98
50877228--50877290	29	2.3	27	86	5	81	38	25	0	36	1.56
50879036--50879206	45	3.7	45	76	15	188	22	19	28	30	1.98
50887287--50887346	27	2.2	27	88	5	86	25	15	25	35	1.94
50887404--50887435	12	2.7	12	95	0	55	28	37	12	21	1.90
50898492--50898594	52	2.0	52	98	0	197	25	16	25	33	1.96
50902321--50902354	18	1.9	18	88	5	52	50	11	2	35	1.54
50907064--50907157	43	2.2	43	83	7	111	24	25	19	30	1.98
50909718--50909772	29	1.9	28	96	3	101	30	29	20	20	1.97
50915740--50915840	28	3.5	30	83	6	127	30	13	26	28	1.94
50915740--50915840	29	3.5	29	81	9	116	30	13	26	28	1.94
50922872--50922972	28	3.5	30	83	6	127	30	13	26	28	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50922872--50922972	29	3.5	29	81	9	116	30	13	26	28	1.94
50926856--50926987	29	4.6	29	83	1	149	25	32	16	25	1.96
50931433--50931551	29	4.2	30	81	10	126	26	29	14	30	1.95
50931435--50931547	58	2.0	57	85	5	156	24	30	15	30	1.95
50931785--50931844	16	3.7	16	80	10	68	8	18	20	53	1.70
50931801--50931851	8	6.4	8	80	14	61	5	19	21	52	1.66
50931791--50931851	32	1.9	32	90	6	97	6	18	21	54	1.66
50933513--50933553	20	2.0	20	100	0	82	34	4	14	46	1.66
50939959--50940005	17	2.8	17	75	12	51	53	2	0	44	1.12
50940037--50940090	21	2.5	22	79	8	58	37	1	12	48	1.53
50940053--50940097	14	3.2	14	81	6	56	44	0	8	46	1.34
50946144--50946246	6	16.8	6	70	15	68	48	14	17	19	1.81
50946159--50946246	37	2.4	37	82	0	95	48	13	18	19	1.80
50946202--50946269	31	2.2	32	89	2	102	54	10	16	19	1.70
50946406--50946507	27	3.8	26	89	3	132	37	21	23	17	1.94
50946666--50946730	22	3.0	22	77	8	69	33	23	21	21	1.97
50946985--50947015	16	1.9	16	93	0	53	35	16	19	29	1.93
50947174--50947374	27	7.4	27	86	5	264	25	19	20	33	1.97
50947359--50947514	27	5.8	27	79	10	124	28	9	20	41	1.84
50947359--50947513	55	2.9	55	79	10	158	29	9	20	40	1.84
50947543--50947876	27	12.4	27	88	0	445	41	6	21	29	1.79
50949395--50949468	25	3.0	24	78	5	85	24	24	16	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50949395--50949501	50	2.2	49	83	8	137	25	23	16	34	1.95
50954281--50954359	28	2.8	28	83	7	97	29	30	11	29	1.92
50954286--50954376	28	3.2	27	80	7	92	29	35	9	25	1.88
50955190--50955371	37	4.9	37	92	0	292	24	31	18	24	1.97
50955518--50955652	48	2.8	48	89	0	198	31	27	8	32	1.86
50955633--50955871	47	5.1	47	89	2	390	25	26	12	34	1.92
50955622--50955871	94	2.7	94	97	1	466	26	26	12	34	1.92
50960382--50960482	28	3.5	28	83	6	105	29	12	27	29	1.93
50960414--50960482	29	2.4	28	90	7	104	28	13	27	30	1.94
50970514--50970663	67	2.2	67	81	8	171	32	17	28	21	1.96
50970538--50970721	67	2.8	64	77	8	194	29	17	29	22	1.97
50974960--50975109	67	2.2	67	81	8	171	32	17	28	21	1.96
50974984--50975167	67	2.8	64	77	8	194	29	17	29	22	1.97
50982514--50982569	11	5.5	11	71	16	57	35	12	19	32	1.89
50982503--50982569	20	3.3	20	93	0	116	34	11	20	32	1.90
50982618--50982738	24	5.0	24	88	7	174	29	20	21	28	1.98
50982935--50982994	31	1.9	31	93	0	102	31	16	25	26	1.96
50984858--50984983	46	2.7	46	92	2	209	20	20	27	30	1.98
50984992--50985025	16	2.1	16	100	0	68	23	11	11	52	1.70
50996719--50996840	46	2.7	46	92	2	192	21	20	27	30	1.98
50996853--50996886	16	2.1	16	100	0	68	23	11	11	52	1.70
51000875--51001031	30	5.4	30	85	9	193	32	14	24	28	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51000875--51001031	57	2.7	57	86	6	194	32	14	24	28	1.94
51000904--51001032	29	4.6	27	88	6	123	33	13	24	28	1.94
51007303--51007369	20	3.3	20	85	0	98	35	10	19	34	1.86
51007418--51007539	25	5.0	24	88	8	176	29	20	22	27	1.98
51007418--51007548	48	2.6	50	82	13	173	31	19	22	27	1.97
51007733--51007792	31	1.9	31	93	0	102	36	16	21	25	1.94
51013224--51013368	40	3.6	40	88	5	204	23	22	28	25	1.99
51013217--51013435	80	2.7	79	77	7	203	23	23	27	25	2.00
51013217--51013408	40	4.8	40	82	6	149	22	23	27	25	2.00
51015030--51015112	41	2.0	41	97	0	157	37	25	14	22	1.92
51018727--51018787	27	2.3	27	82	0	68	18	22	11	47	1.80
51024745--51024794	25	2.0	25	100	0	100	40	4	32	24	1.73
51025664--51025936	27	10.1	27	86	0	330	27	12	19	40	1.87
51026232--51026268	18	2.1	18	94	0	65	21	21	13	43	1.87
51030196--51030367	93	1.8	93	96	0	317	27	29	21	21	1.99
51030188--51030363	46	3.8	46	79	12	216	28	28	21	21	1.98
51032283--51032399	29	4.1	29	88	1	173	32	28	13	25	1.94
51044263--51044298	6	6.2	6	93	6	65	13	0	0	86	0.58
51044265--51044300	17	2.1	17	100	0	72	11	0	0	88	0.50
51054269--51054438	40	4.2	40	85	3	225	21	28	24	25	1.99
51062296--51062505	40	5.2	40	88	2	305	21	28	24	25	1.99
51068064--51068164	50	2.0	50	96	0	184	25	21	34	17	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51069689--51069800	39	2.9	39	89	0	170	23	28	20	27	1.99
51072415--51072515	37	2.7	37	89	3	141	26	20	26	25	1.99
51072480--51072659	48	3.8	48	89	0	279	24	19	26	29	1.98
51078183--51078231	19	2.6	19	83	0	53	20	4	8	67	1.34
51082595--51082717	57	2.1	58	82	4	151	28	18	8	43	1.80
51083484--51083510	13	2.1	13	100	0	54	22	18	22	37	1.95
51091985--51092085	28	3.5	28	86	6	114	28	13	27	29	1.95
51092014--51092085	29	2.5	28	91	6	110	29	13	27	29	1.95
51100065--51100165	28	3.5	28	86	6	114	28	13	27	29	1.95
51100094--51100165	29	2.5	28	91	6	110	29	13	27	29	1.95
51104432--51104711	87	3.2	84	75	10	235	37	11	26	24	1.90
51104432--51104726	29	10.1	29	79	5	213	36	12	26	24	1.92
51104613--51104728	59	2.0	58	83	5	144	37	12	28	21	1.91
51107252--51107337	34	2.5	34	81	3	93	25	24	26	23	2.00
51116157--51116282	42	3.0	43	72	11	98	30	23	18	26	1.97
51118534--51118640	42	2.5	42	96	0	196	28	14	33	22	1.94
51118648--51118717	27	2.5	28	86	2	97	27	14	25	32	1.94
51128894--51128927	15	2.3	15	100	0	68	26	11	32	29	1.92
51132683--51132738	25	2.2	27	78	12	64	25	3	28	42	1.71
51136614--51136797	40	4.6	40	87	2	237	27	26	22	23	2.00
51143920--51143958	20	2.0	20	94	0	69	48	0	2	48	1.15
51144056--51144095	20	2.0	20	100	0	80	45	15	10	30	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51144046--51144110	34	1.9	33	87	9	96	43	13	7	35	1.73
51144079--51144116	14	2.7	14	91	0	58	39	15	5	39	1.70
51146426--51146575	40	3.8	40	81	3	167	24	22	27	26	2.00
51152961--51153137	40	4.4	40	85	4	234	23	22	27	25	2.00
51153365--51153406	22	1.9	22	85	9	59	33	9	14	42	1.78
51172506--51172648	39	3.6	40	85	0	182	24	21	30	23	1.99
51180514--51180657	40	3.6	40	83	2	175	25	20	30	23	1.99
51186245--51186367	39	3.2	39	88	3	185	22	19	32	25	1.97
51186245--51186396	78	2.0	78	84	3	200	23	21	31	24	1.98
51189234--51189427	40	4.8	40	79	10	182	23	26	24	26	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378