Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr01 113035596 
Parameters: 2 7 7 80 10 50 1000
Length:  113035596

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   

This is table  374  of  378  ( 45343 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
111724560--111724613
21
2.6
21
88
5
74
24
7
24
44
1.79
111726304--111726338
18
1.9
18
88
0
52
45
8
8
37
1.65
111727079--111727124
23
2.0
23
100
0
92
8
4
30
56
1.49
111730292--111730646
175
2.0
175
90
0
557
42
11
16
29
1.83
111744124--111744174
25
2.0
25
100
0
102
17
0
19
62
1.32
111747002--111747043
21
2.0
21
90
0
66
57
0
0
42
0.99
111749980--111750012
2
16.5
2
100
0
66
48
0
0
51
1.00
111750294--111750322
2
14.5
2
100
0
58
51
0
0
48
1.00
111750348--111750407
30
1.9
32
83
10
79
55
0
10
35
1.34
111752015--111752059
5
9.0
5
100
0
90
60
0
0
40
0.97
111759149--111759197
20
2.4
21
75
3
55
55
0
0
44
0.99
111759375--111759454
37
2.1
40
83
6
103
52
1
0
46
1.08
111759385--111759468
30
2.8
29
74
15
82
46
1
0
52
1.08
111759419--111759470
22
2.3
24
80
12
65
44
1
0
53
1.11
111759479--111759561
41
2.0
41
97
0
157
32
14
18
34
1.91
111761113--111761164
20
2.5
20
84
9
61
44
1
17
36
1.60
111764162--111764191
2
15.0
2
100
0
60
50
0
0
50
1.00
111766882--111766925
22
2.0
23
86
4
63
43
0
6
50
1.29
111769719--111769951
92
2.5
91
84
5
283
27
18
11
42
1.84
111769737--111769988
91
2.7
91
84
4
301
27
18
10
44
1.82
111772110--111772380
145
1.9
144
86
4
393
43
7
9
39
1.65
111772801--111772866
31
2.1
31
85
0
87
34
9
10
45
1.70
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
111777291--111777343
25
2.1
25
85
0
70
24
0
9
66
1.21
111779439--111779575
63
2.1
65
90
4
215
43
21
10
24
1.84
111779557--111779602
6
8.0
6
90
9
78
50
34
0
15
1.44
111779494--111779762
93
2.9
93
87
8
386
45
24
7
21
1.78
111779647--111779700
6
9.0
6
100
0
108
50
33
0
16
1.46
111782164--111782214
6
8.8
6
89
8
52
25
0
23
50
1.49
111782164--111782204
16
2.6
16
88
0
55
26
0
21
51
1.48
111782180--111782225
6
7.7
6
92
0
74
19
2
28
50
1.60
111782210--111782523
145
2.2
145
91
1
502
28
10
22
37
1.88
111785421--111785471
25
2.0
25
100
0
102
23
15
11
49
1.78
111786782--111786815
17
2.0
17
88
0
50
76
0
2
20
0.92
111786801--111786827
11
2.5
11
100
0
54
92
0
0
7
0.38
111792303--111792364
24
2.6
24
82
5
72
27
56
9
6
1.56
111792392--111792462
30
2.4
30
83
9
92
18
52
7
22
1.69
111792443--111792472
12
2.5
12
88
0
51
23
63
0
13
1.29
111792523--111792883
69
5.3
69
69
6
297
22
52
9
14
1.71
111792770--111793001
117
2.0
117
97
0
437
23
53
8
15
1.69
111792414--111792884
135
3.5
135
94
0
825
21
53
9
15
1.71
111792635--111793125
252
1.9
252
94
0
874
22
52
10
14
1.71
111792848--111793276
135
3.1
134
85
3
543
23
53
8
14
1.67
111792500--111793252
387
1.9
391
93
2
1291
22
52
9
14
1.70
111792797--111793038
117
2.1
117
88
5
364
23
53
9
14
1.69
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
111792887--111793276
141
2.8
140
89
4
587
23
53
8
14
1.68
111798785--111798839
3
18.3
3
100
0
110
32
0
0
67
0.91
111804208--111804246
18
2.2
18
90
0
60
25
17
30
25
1.97
111808564--111808711
69
2.1
69
94
0
269
23
49
11
15
1.77
111808591--111808702
33
3.3
33
64
20
86
23
50
11
14
1.75
111808468--111808831
192
1.9
189
86
7
511
22
49
10
17
1.77
111808612--111809078
123
3.8
121
79
8
376
23
51
8
16
1.71
111808813--111808895
42
2.0
42
80
4
96
22
54
6
16
1.64
111809923--111810015
32
3.0
33
86
9
133
76
13
5
4
1.12
111809923--111810014
31
3.0
31
87
10
127
76
14
5
4
1.12
111810045--111810086
12
3.5
12
100
0
84
9
42
0
47
1.36
111810802--111810903
37
2.6
37
75
20
93
32
4
4
57
1.41
111829792--111829861
24
2.6
26
82
17
90
45
2
2
48
1.32
111829811--111829860
24
2.1
24
100
0
100
46
4
4
46
1.40
111830828--111830893
32
2.1
32
100
0
132
50
6
13
30
1.66
111832993--111833043
20
2.5
20
90
0
75
25
23
7
43
1.81
111838090--111838254
24
6.9
24
75
7
120
25
13
27
32
1.94
111839852--111839885
13
2.8
12
90
4
50
2
29
58
8
1.43
111840756--111840815
2
30.0
2
82
0
66
43
3
6
46
1.46
111840848--111840924
3
24.7
3
89
7
118
31
2
1
64
1.15
111853372--111853494
39
3.0
41
88
10
196
26
17
33
21
1.96
111853363--111853506
44
3.4
44
88
9
235
29
17
31
21
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
111853481--111853526
23
2.0
23
100
0
92
39
13
26
21
1.90
111853437--111853571
66
2.0
67
97
1
254
31
17
30
20
1.95
111853363--111853656
153
1.9
149
91
5
484
29
16
32
21
1.95
111853504--111853950
44
10.5
44
89
6
706
29
17
31
21
1.96
111853504--111853950
127
3.5
130
89
6
682
29
17
31
21
1.96
111855660--111855736
2
41.5
2
72
19
51
38
1
2
57
1.21
111855657--111855728
16
4.9
15
79
15
71
38
1
1
58
1.15
111855662--111855745
25
3.8
24
74
25
78
38
1
2
58
1.19
111855935--111855982
3
16.0
3
100
0
96
33
0
0
66
0.92
111859176--111859208
17
1.9
17
93
0
57
39
3
0
57
1.14
111865814--111865855
19
2.2
19
83
8
50
19
19
2
59
1.49
111867037--111867069
14
2.3
15
89
5
50
30
9
12
48
1.71
111868551--111868601
17
3.1
17
74
23
54
43
1
0
54
1.11
111868559--111868601
22
1.9
23
90
4
70
46
2
0
51
1.13
111868559--111868601
11
4.0
10
80
14
50
46
2
0
51
1.13
111878541--111878594
28
1.9
28
85
7
74
29
0
5
64
1.16
111887214--111887246
7
4.7
7
100
0
66
57
0
0
42
0.98
111891581--111891770
49
4.0
49
89
10
324
44
18
14
22
1.86
111891625--111891763
41
3.2
41
84
15
199
43
18
15
23
1.88
111891581--111891763
90
2.0
90
100
0
366
42
18
15
23
1.88
111891980--111892141
81
2.0
81
81
4
193
46
20
11
21
1.81
111896653--111896705
26
2.0
26
96
0
97
28
11
16
43
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
111897494--111897599
36
2.9
36
90
2
160
34
23
9
32
1.87
111897488--111897602
54
2.1
54
90
0
176
34
22
10
32
1.88
111897488--111897602
18
6.4
18
82
4
142
34
22
10
32
1.88
111905611--111905651
17
2.4
17
95
4
73
34
12
4
48
1.62
111907235--111907268
16
2.1
16
100
0
68
26
0
32
41
1.56
111916430--111916469
20
2.0
20
90
4
64
37
0
5
57
1.21
111916430--111916470
19
2.2
19
86
8
57
39
0
4
56
1.21
111923073--111923109
12
3.1
12
84
0
56
29
5
16
48
1.68
111923401--111923436
6
6.0
6
100
0
72
33
0
16
50
1.46
111934186--111934215
15
1.9
16
93
6
53
50
0
3
46
1.18
111934184--111934237
22
2.5
21
79
5
63
48
0
1
50
1.11
111934254--111934292
16
2.4
16
86
0
51
58
2
2
35
1.25
111935160--111935228
31
2.2
30
82
7
84
53
8
2
34
1.47
111953779--111953834
29
1.9
29
85
7
78
37
14
7
41
1.73
111956948--111957310
185
1.9
187
87
2
534
21
12
15
50
1.76
111963069--111963094
13
2.0
13
100
0
52
46
0
15
38
1.46
111966847--111966884
17
2.2
17
90
0
58
39
0
0
60
0.97
111966853--111966911
28
2.2
26
78
18
68
38
0
1
59
1.08
111981431--111981478
3
16.0
3
100
0
96
33
0
0
66
0.92
111981641--111981665
12
2.1
12
100
0
50
32
16
0
52
1.44
112007705--112007828
46
2.6
48
83
5
155
29
25
16
29
1.96
112007832--112007881
7
7.1
7
95
0
91
16
28
12
44
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
112007880--112008059
31
5.8
31
89
0
261
26
26
18
28
1.98
112008035--112008211
50
3.5
50
89
2
266
26
22
15
35
1.94
112014504--112014564
18
3.4
17
72
14
52
27
3
3
65
1.24
112017998--112018023
2
13.0
2
100
0
52
50
0
0
50
1.00
112021729--112021773
20
2.3
19
84
7
54
51
0
2
46
1.13
112021977--112022032
3
18.7
3
100
0
112
66
0
0
33
0.92
112026003--112026040
2
19.0
2
89
10
60
47
2
0
50
1.15
112029985--112030021
16
2.3
16
90
9
58
89
2
8
0
0.58
112030017--112030052
16
2.3
16
95
4
65
61
33
0
5
1.19
112030837--112030938
37
2.6
37
75
20
93
32
4
4
57
1.41

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378