genome.fa.s1.2.7.7.80.10.50.1000.234.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr01 113035596 
Parameters: 2 7 7 80 10 50 1000
Length:  113035596

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   

This is table  234  of  378  ( 45343 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69220800--69220962	70	2.3	71	98	1	319	34	17	28	19	1.94
69227869--69228066	71	2.8	70	89	5	276	32	18	28	20	1.96
69227903--69228066	71	2.3	71	97	0	310	34	18	28	18	1.95
69243299--69243482	40	4.6	39	75	6	138	26	23	27	22	2.00
69243339--69243527	80	2.4	81	77	4	186	23	24	29	22	1.99
69253639--69253695	30	1.9	30	88	0	87	49	14	7	29	1.69
69259820--69259854	10	3.4	10	92	7	61	31	17	17	34	1.93
69259808--69259867	21	2.9	21	82	2	77	35	15	15	35	1.88
69263079--69263145	25	2.8	24	78	10	66	26	23	17	31	1.97
69263099--69263175	25	3.2	25	75	7	86	28	23	16	31	1.96
69263115--69263159	23	2.0	23	86	0	63	31	20	17	31	1.96
69264445--69264599	56	2.8	56	88	0	238	26	16	24	32	1.96
69264445--69264628	56	3.3	55	82	8	221	26	16	25	32	1.96
69266592--69266683	27	3.4	27	83	5	114	29	22	6	41	1.79
69266682--69266946	54	4.9	54	76	9	202	39	20	11	29	1.87
69266682--69266865	27	6.8	27	81	3	219	40	20	9	28	1.84
69266715--69266922	27	7.7	27	81	3	172	38	21	9	30	1.85
69266682--69266920	81	2.9	82	77	10	215	38	20	10	30	1.86
69268761--69268923	39	4.2	39	91	0	263	22	20	33	23	1.97
69268761--69268954	39	4.9	39	89	0	253	22	21	32	23	1.98
69276682--69276766	39	2.2	40	91	2	136	21	18	32	27	1.97
69276682--69276802	40	3.0	40	85	1	145	20	20	32	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69281621--69281769	80	1.9	80	81	2	183	22	30	24	22	1.99
69281662--69281769	40	2.7	38	85	8	128	21	29	25	23	1.99
69284433--69284598	40	4.2	40	81	3	176	24	27	21	25	1.99
69284449--69284560	39	2.8	38	85	4	134	25	29	22	23	1.99
69284449--69284598	79	1.9	78	83	6	196	24	28	22	26	1.99
69285421--69285466	17	2.5	19	74	22	53	34	23	17	23	1.96
69291794--69291960	40	4.2	40	82	2	185	24	26	22	26	2.00
69294969--69294995	13	2.1	13	100	0	54	29	0	22	48	1.51
69296132--69296237	42	2.5	43	80	4	126	27	21	19	31	1.98
69299332--69299551	40	5.6	40	82	3	257	25	25	23	25	2.00
69307378--69307596	40	5.6	40	81	5	250	25	26	22	24	2.00
69307378--69307596	120	1.8	117	87	4	323	25	26	22	24	2.00
69319481--69319682	91	2.2	94	82	6	232	27	21	23	27	1.99
69319481--69319705	48	4.8	48	76	7	219	27	21	23	28	1.99
69323411--69323503	24	3.8	24	81	9	91	37	20	19	22	1.94
69327457--69327517	30	2.0	30	87	0	86	29	24	4	40	1.76
69330010--69330080	34	2.1	34	91	0	115	30	22	11	35	1.89
69331313--69331347	17	2.1	17	89	10	54	14	28	11	45	1.79
69332588--69332625	12	3.1	13	85	11	53	7	26	36	28	1.84
69333581--69333635	19	2.8	19	78	10	58	40	20	5	34	1.75
69333816--69333869	24	2.3	24	84	9	67	35	18	22	24	1.96
69345134--69345203	28	2.5	28	88	6	97	20	27	40	12	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69345427--69345556	27	4.8	28	87	3	171	29	23	8	39	1.84
69345403--69345513	54	2.1	54	86	3	152	30	24	8	36	1.84
69345427--69345585	54	2.9	54	82	0	147	31	22	8	37	1.84
69345382--69345593	81	2.6	81	73	1	192	34	22	7	35	1.82
69345549--69345702	27	5.7	27	86	3	168	39	22	9	29	1.84
69345694--69345795	18	6.2	18	73	23	107	31	20	24	23	1.98
69345691--69345777	45	1.9	45	95	0	156	32	20	24	22	1.98
69345694--69345825	63	2.1	64	92	1	221	31	19	24	24	1.98
69345775--69345879	27	3.9	27	81	5	122	32	16	23	27	1.96
69346083--69346152	25	2.8	25	97	0	131	25	27	24	22	2.00
69346083--69346177	50	1.9	50	80	8	113	27	25	24	23	2.00
69348778--69348948	93	1.8	93	92	0	288	27	28	21	22	1.99
69348770--69348945	46	3.8	46	79	10	196	28	28	21	22	1.99
69348821--69348964	46	3.1	45	74	21	129	28	29	20	22	1.98
69352623--69352648	13	2.0	13	100	0	52	38	23	7	30	1.83
69352853--69353009	49	3.2	49	87	0	199	27	29	15	27	1.96
69352894--69353024	49	2.7	49	90	0	190	27	29	16	26	1.97
69359389--69359441	24	2.2	24	80	16	56	41	18	1	37	1.62
69362414--69362546	46	2.8	48	80	14	170	22	19	27	30	1.98
69364582--69364650	15	4.6	15	83	0	84	11	17	13	57	1.64
69364573--69364660	30	3.0	30	81	8	99	10	17	15	56	1.66
69367042--69367170	46	2.8	46	96	0	231	20	21	28	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69368496--69368651	46	3.4	46	77	7	131	28	18	26	26	1.98
69368663--69368789	47	2.6	49	85	4	161	25	22	30	22	1.99
69377448--69377816	46	7.8	48	75	14	261	26	19	28	24	1.99
69377451--69377814	48	7.7	46	77	10	213	26	19	28	24	1.99
69379113--69379318	41	5.0	41	82	2	234	36	14	26	22	1.93
69379186--69379294	21	5.3	20	62	16	53	34	11	26	26	1.91
69379113--69379319	82	2.5	82	83	0	270	36	14	26	22	1.92
69388776--69388845	27	2.6	27	95	2	122	30	27	14	28	1.95
69396759--69396828	27	2.6	27	95	2	122	30	27	14	28	1.95
69400999--69401169	24	7.1	24	95	0	288	36	25	17	21	1.95
69408928--69409098	24	7.1	24	95	0	288	36	25	17	21	1.95
69419612--69419657	24	2.0	24	91	4	76	43	28	15	13	1.83
69419674--69419818	50	2.9	48	78	11	130	39	18	23	18	1.92
69428908--69429078	93	1.8	93	94	2	308	28	29	21	21	1.98
69428900--69429075	46	3.8	46	80	14	218	28	28	20	21	1.98
69432015--69432200	40	4.7	40	88	5	236	25	26	22	25	2.00
69440161--69440346	40	4.7	40	88	5	236	25	26	22	25	2.00
69444851--69444903	19	2.7	19	82	8	54	33	5	20	39	1.76
69449655--69449711	29	2.0	29	89	0	87	26	31	15	26	1.96
69451206--69451237	16	2.0	16	93	0	55	15	6	28	50	1.68
69454144--69454216	29	2.5	28	82	8	92	23	30	15	31	1.95
69454206--69454262	29	2.0	29	85	0	78	29	29	12	28	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69464182--69464302	49	2.4	51	81	2	147	24	18	27	29	1.98
69464088--69464517	215	2.0	215	93	0	745	30	14	25	29	1.95
69464397--69464619	100	2.2	98	81	3	241	27	17	24	29	1.98
69464394--69464633	49	4.8	50	77	5	227	27	17	25	30	1.97
69470425--69470596	52	3.4	49	83	9	188	29	11	29	29	1.92
69481986--69482161	46	3.8	46	81	10	232	20	21	29	28	1.98
69481982--69482153	93	1.8	93	96	0	317	20	22	30	27	1.98
69489764--69489828	27	2.4	27	92	0	103	21	26	13	38	1.91
69489919--69490065	31	4.7	31	87	3	215	27	28	17	27	1.97
69490058--69490170	33	3.5	33	85	4	149	25	23	13	37	1.91
69491807--69491856	11	4.5	11	78	14	57	62	4	0	34	1.14
69494968--69495003	18	2.0	18	94	0	63	0	58	0	41	0.98
69494966--69495000	12	2.8	13	91	4	54	0	60	0	40	0.97
69497198--69497267	28	2.5	28	86	9	90	27	14	25	32	1.94
69501884--69501913	15	1.9	16	93	6	53	36	23	0	40	1.55
69502163--69502302	55	2.6	53	82	6	174	20	25	18	35	1.95
69502635--69502694	31	1.9	31	83	6	77	30	25	5	40	1.77
69505164--69505217	26	2.0	27	82	10	67	31	11	11	46	1.74
69509392--69509422	16	1.9	16	93	0	53	35	22	0	41	1.54
69509389--69509428	20	2.0	20	85	0	53	37	22	0	40	1.54
69509682--69509819	55	2.6	53	82	6	179	24	22	18	34	1.96
69509614--69509867	53	4.8	52	78	8	239	22	24	18	35	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69510203--69510261	30	2.0	30	86	0	82	28	28	3	38	1.73
69518627--69518660	16	2.1	16	89	10	52	14	0	14	70	1.17
69521667--69521818	43	3.6	43	79	10	179	30	25	19	25	1.98
69524483--69524615	48	2.8	49	78	11	141	17	18	28	36	1.93
69534275--69534325	8	6.4	8	79	0	57	47	19	21	11	1.81
69534275--69534325	16	3.2	16	85	0	66	47	19	21	11	1.81
69534548--69534616	29	2.4	29	90	0	102	23	17	30	28	1.97
69538750--69538804	16	3.4	16	84	0	65	49	18	20	12	1.79
69539032--69539133	29	3.6	29	80	6	109	26	16	29	27	1.97
69542024--69542060	16	2.2	17	90	4	58	54	29	2	13	1.53

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378