genome.fa.s1.2.7.7.80.10.50.1000.148.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr01 113035596 
Parameters: 2 7 7 80 10 50 1000
Length:  113035596

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   

This is table  148  of  378  ( 45343 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42460723--42460757	8	4.5	8	89	3	54	54	22	20	2	1.58
42460887--42460927	17	2.4	17	100	0	82	9	26	41	21	1.84
42460987--42461074	29	3.1	29	86	4	117	32	11	25	30	1.91
42466076--42466242	40	4.2	40	84	3	203	23	20	28	26	1.99
42466076--42466242	79	2.1	79	85	3	219	23	20	28	26	1.99
42474236--42474386	80	1.9	80	88	2	232	25	21	27	25	1.99
42474236--42474403	40	4.2	39	85	4	203	23	20	28	26	1.99
42474236--42474403	80	2.1	80	86	2	230	23	20	28	26	1.99
42483521--42483625	28	3.7	28	84	1	129	29	16	33	20	1.95
42483926--42484289	27	13.7	27	81	6	368	39	19	9	31	1.84
42483926--42484289	53	6.8	54	82	6	381	39	19	9	31	1.84
42483926--42484289	80	4.6	79	82	7	353	39	19	9	31	1.84
42487114--42487174	28	2.2	28	90	0	95	19	18	37	24	1.94
42487490--42487827	27	12.7	27	81	7	365	39	18	10	32	1.84
42487489--42487800	79	3.9	79	87	4	414	39	18	9	32	1.84
42487490--42487854	81	4.6	80	84	6	411	38	18	10	32	1.85
42487499--42487865	54	6.9	54	83	9	294	38	18	11	31	1.86
42487619--42487865	27	9.2	27	84	5	179	38	17	11	32	1.85
42489611--42489639	2	14.5	2	100	0	58	51	0	0	48	1.00
42493732--42493763	14	2.3	15	89	10	50	25	0	6	68	1.12
42495463--42495525	16	3.9	16	85	0	63	41	3	26	28	1.71
42499516--42499886	119	3.1	119	82	4	469	35	15	23	25	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42499783--42499851	29	2.4	29	78	9	70	34	17	26	21	1.95
42505194--42505641	43	10.4	42	81	8	444	23	16	27	31	1.96
42505192--42505641	86	5.2	87	84	5	528	23	16	27	32	1.96
42505192--42505641	129	3.5	129	84	8	551	23	16	27	32	1.96
42505589--42505723	56	2.4	56	75	16	152	30	14	20	34	1.92
42510163--42510486	43	7.5	43	93	0	488	33	19	14	32	1.92
42524506--42524565	27	2.3	26	82	2	66	36	20	21	21	1.95
42525242--42525491	27	9.3	27	88	0	349	26	20	18	34	1.96
42531521--42531579	27	2.2	27	90	0	91	45	18	15	20	1.85
42531517--42531587	27	2.6	27	80	8	90	40	16	19	22	1.91
42531581--42531859	27	10.4	27	89	1	409	26	21	18	34	1.96
42536146--42536207	31	2.0	32	87	3	90	35	19	24	20	1.96
42536528--42536559	16	2.0	16	100	0	64	6	37	31	25	1.81
42536924--42537176	27	9.4	27	90	0	337	25	21	18	33	1.96
42536959--42537165	107	1.9	108	91	1	335	26	21	18	33	1.96
42539396--42539497	44	2.4	43	88	4	154	20	16	29	33	1.95
42542760--42542893	40	3.4	39	79	8	146	26	24	23	26	2.00
42550162--42550337	46	3.8	46	79	12	216	20	21	30	28	1.98
42550158--42550328	93	1.8	93	94	0	306	20	21	30	27	1.98
42553653--42553775	39	3.1	39	78	10	110	26	24	21	28	1.99
42555423--42555521	41	2.4	42	81	3	112	28	22	25	24	1.99
42558215--42558323	23	4.8	23	78	13	111	21	20	20	38	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42558215--42558323	45	2.4	45	89	3	166	21	20	20	38	1.94
42570006--42570036	2	15.5	2	100	0	62	48	0	0	51	1.00
42572115--42572158	19	2.4	19	84	3	63	36	6	13	43	1.71
42572356--42572472	23	5.2	23	82	10	143	23	24	17	33	1.97
42572366--42572473	22	4.8	22	81	10	112	25	24	18	32	1.97
42572356--42572478	45	2.7	44	88	5	174	23	24	17	34	1.96
42573474--42573656	65	2.8	65	80	7	176	21	25	27	25	1.99
42576016--42576697	342	2.0	343	92	0	1123	37	19	17	25	1.93
42576656--42576721	33	2.0	34	81	3	80	24	24	25	25	2.00
42581281--42581402	40	2.9	44	83	9	114	34	0	1	63	1.10
42581358--42581515	29	5.2	30	76	12	126	32	3	0	63	1.17
42581278--42581461	19	9.8	18	68	17	90	33	1	1	64	1.11
42581294--42581496	10	19.8	10	69	17	96	34	1	0	62	1.13
42581417--42581499	11	7.9	11	76	7	75	37	2	0	60	1.10
42581315--42581504	22	9.1	22	74	13	84	34	2	1	61	1.17
42584068--42584111	8	5.7	7	85	15	52	15	0	2	81	0.78
42584065--42584111	16	3.0	15	82	17	60	19	0	2	78	0.85
42584068--42584122	9	6.6	8	79	10	58	14	1	1	81	0.85
42584066--42584120	16	3.5	15	81	13	58	16	1	1	80	0.90
42592820--42592862	16	2.9	15	80	10	52	58	0	0	41	0.98
42595738--42596054	48	6.7	49	74	10	185	24	29	18	27	1.98
42595883--42596106	46	4.8	47	77	7	186	25	26	17	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42595883--42596097	94	2.3	94	84	1	261	25	26	18	29	1.98
42595737--42596001	141	1.9	141	85	5	358	24	30	18	26	1.98
42607035--42607203	48	3.6	48	78	3	189	25	28	18	27	1.98
42611637--42611681	2	22.5	2	93	0	72	44	0	2	53	1.13
42621675--42621713	2	19.5	2	100	0	78	51	0	0	48	1.00
42621974--42622025	22	2.3	23	80	9	63	15	9	11	63	1.52
42622054--42622113	30	2.0	30	90	0	93	30	1	10	58	1.41
42625349--42625403	14	4.1	13	78	21	51	72	3	3	20	1.15
42629487--42629577	37	2.4	37	96	1	164	25	32	18	23	1.97
42629617--42629816	48	4.2	48	97	0	373	32	28	6	33	1.83
42629808--42630047	96	2.5	97	91	2	383	29	27	9	33	1.88
42629808--42630047	49	4.9	49	91	4	385	29	27	9	33	1.88
42633556--42633601	24	2.0	23	87	8	67	71	0	8	19	1.11
42636870--42636940	22	3.2	23	70	8	74	32	5	15	46	1.69
42636867--42636955	44	2.0	44	97	0	169	33	4	16	44	1.68
42645082--42645665	27	21.6	27	85	3	710	27	21	9	41	1.84
42646994--42647070	9	7.9	9	72	16	64	35	9	20	35	1.85
42647003--42647074	11	7.1	11	70	17	66	36	12	19	31	1.89
42646992--42647074	20	4.2	20	96	0	157	36	12	19	32	1.88
42647129--42647294	24	7.0	24	91	4	248	29	23	21	25	1.99
42647129--42647294	71	2.3	71	89	5	246	29	23	21	25	1.99
42647487--42647550	31	2.1	31	90	0	101	35	15	23	25	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42650400--42650981	134	4.3	135	84	5	711	27	22	9	39	1.86
42650400--42650980	27	21.6	27	84	6	687	27	22	9	39	1.86
42650932--42650991	27	2.2	27	81	0	66	33	23	6	36	1.81
42652305--42652387	20	4.2	20	90	6	141	37	12	18	32	1.87
42652442--42652630	24	8.0	24	89	4	269	28	23	21	26	1.99
42652442--42652609	47	3.6	47	92	3	284	29	23	20	26	1.99
42652442--42652630	94	2.0	96	90	4	303	28	23	21	26	1.99
42652823--42652886	31	2.1	31	90	0	101	35	15	23	25	1.94
42653756--42653807	15	3.6	14	73	17	52	42	7	9	40	1.66
42655730--42656312	27	21.6	27	86	2	735	27	22	9	40	1.84
42656264--42656323	27	2.2	27	81	0	66	33	23	6	36	1.81
42657641--42657717	9	7.9	9	72	16	64	35	9	20	35	1.85
42657650--42657721	11	7.1	11	70	17	66	36	12	19	31	1.89
42657639--42657721	20	4.2	20	96	0	157	36	12	19	32	1.88
42657776--42657965	24	8.0	24	89	3	269	29	23	21	26	1.99
42657776--42657944	47	3.6	47	92	1	284	30	23	20	26	1.98
42657775--42657965	71	2.7	71	87	5	269	29	23	20	26	1.99
42658159--42658222	31	2.1	31	90	0	101	35	15	23	25	1.94
42667363--42667507	43	3.4	44	72	15	124	27	22	19	30	1.98
42668866--42668916	17	2.9	17	85	2	66	15	17	19	47	1.83
42670058--42670099	20	2.1	20	86	0	57	35	11	2	50	1.52
42681414--42681627	56	3.8	56	88	1	286	35	26	13	25	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42687095--42687125	7	4.4	7	91	0	53	29	0	51	19	1.47
42692015--42692151	56	2.4	56	87	0	211	34	24	13	27	1.93
42693755--42693783	12	2.5	12	94	5	51	37	17	6	37	1.76
42695038--42695095	30	1.9	30	82	6	73	18	27	29	24	1.98
42713000--42713131	56	2.5	51	77	6	138	32	25	12	28	1.93
42717760--42717940	48	3.8	48	83	0	200	28	18	23	29	1.98
42720444--42720481	19	2.0	20	85	15	53	39	23	0	36	1.55
42722896--42723044	80	1.9	80	81	2	183	22	30	24	22	1.99
42722937--42723044	40	2.7	38	85	8	128	21	29	25	23	1.99
42733134--42733171	19	2.0	20	85	15	53	39	23	0	36	1.55

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378