genome.fa.s1.2.7.7.80.10.50.1000.146.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr01 113035596 
Parameters: 2 7 7 80 10 50 1000
Length:  113035596

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   

This is table  146  of  378  ( 45343 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41855110--41855174	27	2.5	26	85	11	82	46	4	10	38	1.60
41855128--41855183	27	2.1	27	96	0	103	41	3	12	42	1.60
41860238--41860407	49	3.6	49	71	7	152	29	16	30	24	1.96
41860238--41860486	93	2.6	96	81	5	276	29	16	28	25	1.97
41862841--41862941	28	3.5	28	86	6	114	28	13	27	29	1.95
41869128--41869228	28	3.5	28	86	6	114	28	13	27	29	1.95
41877982--41878006	13	1.9	13	100	0	50	16	40	24	20	1.91
41887333--41887571	128	1.8	132	96	3	450	32	15	15	37	1.89
41888911--41888968	30	2.0	30	86	3	82	44	12	8	34	1.72
41898804--41898878	33	2.3	33	90	0	114	29	25	21	24	1.99
41899061--41899132	27	2.7	27	80	0	90	34	20	23	20	1.96
41899047--41899137	27	3.4	26	77	6	83	35	19	23	21	1.96
41899279--41899330	27	1.9	27	84	0	68	30	23	13	32	1.93
41899320--41899378	27	2.2	27	87	6	84	20	23	18	37	1.94
41899410--41899772	27	13.4	27	79	4	293	30	9	19	39	1.84
41900042--41900110	9	7.7	9	90	0	111	46	17	8	27	1.77
41900116--41900213	17	5.4	17	63	13	52	51	15	4	29	1.62
41900110--41900218	37	2.9	37	95	0	200	48	16	4	30	1.66
41903968--41904004	19	1.9	19	100	0	74	24	16	16	43	1.87
41907739--41907774	18	2.0	18	100	0	72	44	16	11	27	1.82
41912524--41912563	21	2.0	21	85	5	55	25	25	35	15	1.94
41916577--41916782	40	5.1	40	87	0	259	26	22	26	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41919582--41919711	40	3.3	40	87	5	176	25	29	21	23	1.99
41927958--41928176	40	5.4	40	85	2	251	26	22	26	25	2.00
41928025--41928202	80	2.2	80	80	0	176	28	23	25	23	2.00
41930841--41930877	17	2.2	17	100	0	74	16	24	10	48	1.77
41934652--41934683	9	3.6	9	100	0	64	40	21	12	25	1.88
41935969--41936001	11	3.0	11	95	0	57	60	0	0	39	0.97
41945321--41945484	71	2.3	71	100	0	328	18	28	17	35	1.94
41945321--41945518	71	2.8	70	91	3	258	20	28	17	33	1.95
41950438--41950482	24	1.9	23	82	13	56	31	24	11	33	1.90
41963306--41963341	13	2.8	13	91	0	54	22	38	25	13	1.91
41967883--41967922	21	2.0	20	85	5	53	27	25	35	12	1.92
41969094--41969206	46	2.5	46	91	0	181	23	27	18	30	1.97
41973806--41973870	27	2.4	27	89	0	94	24	21	10	43	1.84
41973902--41974108	27	7.7	27	75	5	134	40	20	7	31	1.81
41974002--41974082	26	3.0	26	79	13	92	41	16	7	34	1.76
41974964--41975033	25	2.8	25	91	0	104	28	25	21	24	1.99
41974976--41975046	25	2.9	25	80	14	76	29	25	19	25	1.99
41975253--41975322	31	2.3	30	83	7	97	31	14	22	31	1.94
41975264--41975334	31	2.3	29	88	9	106	29	15	22	32	1.95
41975253--41975334	30	2.7	30	85	9	114	30	15	23	30	1.96
41978498--41978684	71	2.7	68	93	5	281	18	28	18	34	1.95
41978521--41978684	71	2.3	71	100	0	328	18	28	17	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41978521--41978718	71	2.8	70	92	3	276	20	28	17	33	1.95
41987184--41987363	40	4.6	40	88	4	258	24	20	28	26	1.99
41987175--41987383	78	2.7	79	85	5	280	23	20	28	27	1.99
41995263--41995462	39	5.1	40	85	5	257	22	21	29	27	1.99
41995259--41995466	79	2.7	78	89	1	319	23	21	27	27	1.99
41996860--41996898	19	2.1	19	85	0	51	15	5	7	71	1.26
42012700--42012736	17	2.2	17	95	0	65	48	8	18	24	1.75
42013188--42013241	21	2.5	21	85	8	65	22	31	3	42	1.71
42015344--42015430	22	4.0	22	76	0	84	31	25	29	13	1.94
42017495--42017522	5	5.6	5	100	0	56	78	0	0	21	0.75
42025489--42025549	30	2.0	30	83	0	77	31	22	8	37	1.84
42033388--42033425	19	2.1	18	90	9	60	52	15	26	5	1.64
42034582--42034616	17	2.1	17	100	0	70	34	11	28	25	1.91
42036235--42036266	13	2.3	15	89	10	50	15	21	3	59	1.50
42042119--42042435	27	11.8	27	87	3	390	29	23	8	39	1.83
42042360--42042636	27	10.2	27	79	8	125	37	19	8	33	1.83
42042428--42042663	54	4.4	53	76	7	197	40	19	8	31	1.82
42042427--42042664	27	8.8	27	78	6	178	39	19	8	31	1.83
42042683--42042760	27	2.9	27	79	11	97	38	21	17	21	1.93
42043920--42043967	25	2.0	24	83	4	60	31	25	18	25	1.98
42044006--42044062	9	5.9	9	73	15	51	35	8	21	35	1.84
42044004--42044074	20	3.5	20	94	0	124	35	11	21	32	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42044015--42044069	11	5.4	11	70	16	55	36	12	20	30	1.90
42044120--42044330	23	9.0	24	90	7	319	27	20	22	29	1.98
42044120--42044330	47	4.5	47	92	5	331	27	20	22	29	1.98
42045683--42045774	18	5.2	16	76	16	76	17	3	1	78	0.95
42045683--42045754	6	12.2	6	81	14	87	15	2	1	80	0.89
42045683--42045774	29	3.1	29	81	10	96	17	3	1	78	0.95
42056069--42056119	16	3.2	16	75	5	50	27	3	3	64	1.28
42062110--42062172	20	3.3	20	73	13	78	46	15	15	22	1.84
42062103--42062176	37	2.0	37	97	0	139	44	18	14	21	1.86
42062103--42062161	17	3.3	17	75	13	64	44	16	16	22	1.87
42064667--42064884	45	4.9	45	88	3	284	23	21	28	26	1.99
42064667--42064871	89	2.3	89	87	4	281	23	21	28	26	1.99
42072267--42072469	39	5.2	39	91	0	318	19	20	29	31	1.97
42072267--42072499	39	6.0	38	89	1	286	18	20	29	31	1.96
42086205--42086402	81	2.4	81	91	1	308	28	24	7	38	1.83
42086347--42086394	16	3.3	16	67	27	52	37	20	0	41	1.53
42086205--42086402	27	7.3	27	87	2	254	28	24	7	38	1.83
42086401--42086583	27	6.8	27	79	5	167	40	21	9	28	1.85
42086433--42086582	81	1.9	81	84	5	205	42	21	8	28	1.82
42086436--42086636	54	3.7	54	79	7	149	41	19	8	29	1.82
42086513--42086642	27	4.7	27	76	11	111	43	18	8	30	1.80
42087494--42087534	17	2.4	17	100	0	82	12	31	36	19	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42087889--42087944	11	5.5	11	71	16	57	35	12	19	32	1.89
42087878--42087944	20	3.3	20	93	0	116	34	11	20	32	1.90
42087994--42088187	24	8.0	24	90	4	291	28	21	21	28	1.98
42089670--42089774	27	4.1	27	72	12	69	45	19	15	20	1.85
42090075--42090138	27	2.4	26	89	7	94	31	15	14	39	1.87
42092285--42092349	28	2.3	28	86	0	94	33	27	7	30	1.85
42092455--42092545	28	3.2	28	85	4	112	20	24	23	31	1.98
42092466--42092556	28	3.2	28	85	1	74	24	26	19	29	1.98
42093008--42093046	19	2.1	19	85	0	51	15	5	7	71	1.26
42100231--42100367	56	2.4	56	97	0	256	27	14	25	32	1.95
42102921--42103016	48	2.0	47	95	2	174	37	13	28	20	1.91
42105822--42105926	53	2.0	53	86	0	147	20	24	19	36	1.95
42105840--42106025	55	3.4	54	78	2	176	22	22	17	37	1.94
42115575--42115641	34	2.0	34	90	0	107	43	19	8	28	1.81
42127802--42127826	5	5.0	5	100	0	50	40	20	40	0	1.52
42131747--42131822	37	2.1	37	83	14	95	26	7	22	43	1.80
42132708--42132829	43	2.8	43	73	9	106	31	25	20	22	1.98
42136839--42136897	29	2.0	29	100	0	118	32	30	16	20	1.95
42139276--42139340	29	2.2	29	97	0	121	29	16	27	26	1.97
42139441--42139467	2	13.5	2	100	0	54	48	0	0	51	1.00
42143862--42143992	43	3.0	42	83	4	156	32	28	17	22	1.96
42145535--42145664	29	4.5	29	86	6	165	28	26	13	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42147736--42147785	26	1.9	26	95	0	91	32	8	4	56	1.47
42150861--42150922	7	8.4	7	73	8	52	29	12	22	35	1.91
42150863--42150923	21	2.7	23	85	7	90	26	13	24	36	1.92
42156161--42156259	28	3.5	29	83	6	114	30	27	15	27	1.96
42158954--42159107	40	3.8	40	80	1	157	25	26	21	26	1.99
42160004--42160028	13	1.9	13	100	0	50	36	16	16	32	1.90
42167177--42167275	28	3.5	29	83	6	114	30	27	15	27	1.96
42170190--42170455	46	5.6	46	75	10	189	31	18	26	23	1.98
42170327--42170454	49	2.6	49	86	3	168	31	18	26	23	1.98
42170144--42170500	140	2.5	140	80	8	368	30	18	26	24	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378