genome.fa.s1.2.7.7.80.10.50.1000.147.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr01 113035596 
Parameters: 2 7 7 80 10 50 1000
Length:  113035596

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   

This is table  147  of  378  ( 45343 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42171642--42171681	21	2.0	20	85	5	53	17	37	22	22	1.94
42174927--42175065	46	2.9	49	88	6	166	22	24	13	39	1.90
42174975--42175066	46	2.0	46	100	0	184	23	23	15	36	1.93
42177149--42177187	16	2.4	16	91	0	60	0	30	0	69	0.89
42177255--42177288	2	17.0	2	100	0	68	50	0	0	50	1.00
42180416--42180497	39	2.1	39	95	0	146	20	24	31	23	1.98
42187063--42187144	39	2.1	39	93	0	137	21	24	30	23	1.99
42194295--42194417	47	2.6	47	79	14	130	29	20	26	23	1.99
42194340--42194655	49	6.7	45	71	14	146	28	19	27	24	1.98
42194340--42194499	45	3.5	44	76	10	153	26	19	28	25	1.99
42202583--42202615	13	2.6	13	90	4	50	39	0	12	48	1.40
42206929--42207031	37	2.8	37	96	0	188	24	32	20	23	1.98
42207172--42207337	48	3.5	48	99	0	323	31	27	5	36	1.79
42207172--42207357	96	1.9	95	89	4	284	32	26	4	35	1.78
42207273--42207406	69	1.9	70	95	1	243	34	25	4	35	1.76
42207225--42207453	117	2.0	117	95	1	415	32	26	5	35	1.80
42207343--42207711	95	3.9	96	94	1	645	30	28	7	33	1.84
42207343--42207711	48	7.8	48	96	1	645	30	28	7	33	1.84
42211013--42211291	40	7.0	40	95	0	486	26	29	22	21	1.99
42213749--42213911	70	2.3	71	98	1	319	19	28	17	34	1.94
42213749--42213945	70	2.8	70	90	4	249	20	28	17	33	1.95
42221261--42221447	71	2.7	68	93	5	281	18	28	18	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42221284--42221447	71	2.3	71	100	0	328	18	28	17	35	1.94
42221284--42221481	71	2.8	70	91	3	258	20	28	17	33	1.95
42223814--42223993	40	4.5	39	79	9	168	26	22	26	25	2.00
42226169--42226271	37	2.8	37	96	0	188	24	32	20	23	1.98
42226422--42226788	48	7.6	48	98	0	680	28	26	9	35	1.88
42228867--42228934	34	2.0	34	100	0	136	26	20	14	38	1.91
42228947--42229049	37	2.8	37	96	0	188	24	32	20	23	1.98
42229190--42229307	48	2.5	48	98	0	227	31	27	5	36	1.78
42229243--42229377	70	1.9	70	95	0	243	34	25	4	35	1.76
42229190--42229327	48	2.9	47	89	4	143	33	26	4	35	1.76
42229196--42229425	118	1.9	118	96	0	424	33	26	5	35	1.79
42229313--42229732	48	8.8	48	96	0	741	31	28	6	33	1.83
42233615--42233689	6	12.3	6	79	8	80	16	4	1	78	0.96
42237368--42237558	40	4.8	40	78	7	176	24	24	28	23	2.00
42237368--42237549	78	2.3	80	81	8	203	24	24	27	23	2.00
42240205--42240297	42	2.2	42	90	3	143	29	17	24	29	1.97
42242094--42242278	40	4.7	40	84	7	227	23	22	28	25	1.99
42242094--42242276	79	2.3	81	85	7	241	24	22	27	25	2.00
42242095--42242311	79	2.7	78	79	12	237	25	21	27	25	1.99
42250206--42250389	40	4.7	40	79	9	200	25	21	27	26	1.99
42250265--42250412	79	1.9	79	83	8	194	25	20	26	27	1.99
42253993--42254079	43	2.0	43	90	0	138	21	17	32	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42258342--42258497	49	3.2	49	90	4	246	30	7	30	31	1.85
42258343--42258492	47	3.1	47	91	5	239	30	8	30	31	1.86
42258559--42258673	37	3.1	37	98	0	221	26	19	32	21	1.97
42260133--42260196	18	3.6	17	75	8	56	40	25	14	20	1.89
42265731--42265765	18	1.9	18	100	0	70	34	25	17	22	1.96
42283926--42283982	30	1.9	30	96	0	105	19	36	3	40	1.69
42287954--42287988	6	5.8	6	96	0	61	17	11	20	51	1.75
42287944--42288012	6	11.5	6	90	0	57	17	5	21	55	1.63
42288731--42288763	5	6.6	5	100	0	66	18	0	0	81	0.68
42293127--42293158	5	6.6	5	92	7	57	18	0	0	81	0.70
42293127--42293157	9	3.3	9	91	8	53	19	0	0	80	0.71
42294046--42294072	4	6.8	4	100	0	54	77	0	0	22	0.76
42297653--42297720	32	2.1	32	100	0	136	38	2	11	47	1.55
42298428--42298489	31	2.0	31	100	0	124	25	9	16	48	1.76
42301740--42301905	40	4.2	40	78	8	160	25	22	27	24	2.00
42301780--42301889	39	2.8	40	82	10	136	22	23	29	24	1.99
42310508--42310551	22	2.0	23	90	4	72	40	0	4	54	1.21
42310508--42310558	20	2.5	20	83	6	57	37	0	5	56	1.23
42311035--42311138	51	2.0	51	100	0	208	19	33	1	45	1.61
42314251--42314470	46	4.7	44	78	13	185	27	19	29	23	1.98
42314253--42314470	94	2.3	94	82	7	248	27	19	29	23	1.98
42326874--42326984	54	2.1	53	89	1	168	6	30	13	49	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42331543--42331808	47	5.7	46	73	12	181	29	19	27	23	1.98
42335997--42336142	72	2.0	72	100	0	292	30	9	17	42	1.81
42342836--42343020	94	2.0	94	98	0	361	33	10	5	49	1.62
42343676--42343841	27	6.2	26	77	12	149	34	22	13	28	1.93
42343676--42343815	54	2.6	53	92	3	226	33	22	14	29	1.94
42343835--42343912	27	2.9	27	86	0	102	33	17	20	28	1.96
42344270--42344363	28	3.2	28	73	16	82	24	21	25	28	1.99
42344292--42344354	33	1.9	33	93	0	108	26	20	26	25	1.99
42346778--42346821	13	3.3	13	90	3	61	31	22	25	20	1.98
42352757--42352912	40	4.0	40	77	5	140	23	26	23	26	2.00
42352728--42352912	78	2.3	78	77	12	189	23	27	23	25	2.00
42356679--42356888	40	5.2	40	87	2	305	25	24	28	21	1.99
42364800--42364981	40	4.6	40	84	4	235	24	24	28	22	1.99
42366641--42366714	31	2.3	34	83	9	100	44	24	6	24	1.77
42368269--42368299	16	1.9	16	100	0	62	25	12	9	51	1.70
42371094--42371141	25	1.9	25	86	0	69	33	25	16	25	1.96
42371185--42371243	20	3.0	20	92	0	100	37	11	20	30	1.89
42371294--42371365	24	3.0	24	83	6	92	27	20	25	26	1.99
42371557--42371657	31	3.1	31	82	15	139	38	14	21	24	1.92
42371574--42371680	37	2.8	38	94	4	189	39	14	22	24	1.91
42379374--42379421	25	1.9	25	86	0	69	33	25	16	25	1.96
42379465--42379522	20	2.9	20	92	0	98	36	12	20	31	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42379574--42379668	24	4.0	24	85	10	124	28	21	24	26	1.99
42379575--42379668	47	2.0	49	85	12	133	27	21	24	26	1.99
42379859--42379960	31	3.1	31	80	17	132	39	14	21	24	1.91
42379876--42379983	38	2.8	38	95	1	189	38	13	23	24	1.91
42385577--42385673	29	3.4	29	81	4	108	23	14	29	31	1.94
42387676--42387879	40	5.1	40	85	4	214	26	22	27	24	1.99
42387676--42387879	80	2.5	80	80	1	239	26	22	27	24	1.99
42396634--42396713	29	2.8	29	81	12	94	27	15	27	30	1.96
42397823--42397855	17	1.9	17	93	0	57	36	15	18	30	1.91
42398478--42398628	22	6.5	23	78	12	141	37	19	19	23	1.94
42398482--42398613	45	2.9	46	75	10	137	37	19	19	23	1.94
42399088--42399124	16	2.3	16	95	0	65	29	29	21	18	1.97
42406404--42406442	15	2.6	16	92	8	64	28	23	10	38	1.87
42406398--42406440	15	2.5	17	78	21	54	25	18	13	41	1.88
42406654--42406684	2	15.5	2	100	0	62	51	0	0	48	1.00
42408673--42408733	30	2.0	30	83	0	77	31	22	8	37	1.84
42417556--42417779	40	5.6	40	83	6	274	25	25	24	24	2.00
42417556--42417779	83	2.8	80	85	4	281	25	25	24	24	2.00
42420211--42420262	2	26.0	2	92	0	86	50	0	1	48	1.12
42420517--42420649	39	3.4	39	87	1	149	24	28	21	24	1.99
42420551--42420666	40	2.9	40	88	1	153	25	26	20	26	1.99
42425504--42425689	40	4.7	40	85	5	218	25	22	26	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42425504--42425722	80	2.8	80	78	12	229	26	22	26	24	2.00
42431017--42431155	39	3.5	39	87	1	170	24	26	23	25	2.00
42431051--42431167	40	3.0	40	88	1	155	27	25	20	26	1.99
42435213--42435250	20	1.9	20	88	0	58	18	13	31	36	1.89
42436564--42436633	30	2.4	30	92	2	115	21	27	34	17	1.95
42438715--42439000	40	7.2	40	94	0	475	29	27	20	22	1.99
42440254--42440293	13	3.1	13	100	0	80	52	15	7	25	1.68
42442026--42442056	7	4.4	7	91	0	53	29	0	51	19	1.47
42452246--42452348	29	3.6	27	81	5	98	29	33	16	21	1.95
42457704--42457755	24	2.0	27	85	14	74	34	5	13	46	1.67

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378