genome.fa.s1.2.7.7.80.10.50.1000.345.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr01 113035596 
Parameters: 2 7 7 80 10 50 1000
Length:  113035596

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   

This is table  345  of  378  ( 45343 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104060044--104060083	16	2.5	16	87	0	62	45	2	5	47	1.38
104071639--104071748	26	4.2	26	97	0	184	33	5	24	36	1.79
104076730--104076756	14	1.9	14	100	0	54	59	11	7	22	1.56
104092136--104092161	13	2.0	13	100	0	52	61	7	0	30	1.24
104100103--104100130	1	28.0	1	100	0	56	0	0	0	100	0.00
104112065--104112115	25	2.0	25	96	0	93	29	7	5	56	1.51
104119022--104119066	19	2.3	20	84	3	56	71	2	4	22	1.15
104119426--104119460	16	2.2	16	89	0	52	22	2	2	71	1.13
104121460--104121527	3	22.3	3	71	14	50	27	7	2	61	1.37
104121499--104121546	19	2.6	17	78	12	51	31	12	4	52	1.58
104131160--104131220	13	4.7	13	78	8	70	26	8	27	37	1.85
104131459--104131517	12	4.9	12	75	8	57	71	8	15	5	1.28
104132037--104132069	2	16.5	2	100	0	66	48	0	0	51	1.00
104134814--104134874	24	2.5	24	80	20	65	44	6	0	49	1.28
104136489--104136530	2	21.0	2	100	0	84	50	0	0	50	1.00
104144711--104144750	21	1.9	21	94	0	71	42	2	10	45	1.51
104144887--104144946	17	3.4	18	80	13	72	40	0	6	53	1.27
104152757--104152813	24	2.4	24	88	8	82	50	22	0	26	1.49
104152835--104152868	2	17.5	2	87	6	52	50	0	2	47	1.16
104153652--104153729	21	3.6	21	87	3	111	33	25	25	15	1.95
104153640--104153739	21	4.6	21	82	3	74	34	24	24	18	1.96
104154008--104154099	44	2.1	44	83	4	114	30	23	22	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104155381--104155432	25	2.1	25	85	0	68	38	15	9	36	1.80
104156883--104156923	20	2.0	20	85	0	55	53	2	7	36	1.42
104156857--104156979	64	1.9	64	91	1	203	48	2	8	40	1.46
104160719--104160850	54	2.4	53	79	8	140	39	0	31	28	1.57
104160821--104160864	19	2.3	20	84	7	56	31	0	34	34	1.58
104160771--104160924	74	2.1	74	82	9	181	40	0	33	25	1.56
104161764--104161803	11	3.5	11	89	6	53	0	15	0	85	0.61
104161692--104161900	111	1.9	113	90	2	341	13	20	12	54	1.71
104162317--104162604	143	2.0	146	88	3	438	42	4	9	43	1.59
104165607--104165650	19	2.3	20	84	7	56	31	0	34	34	1.58
104165561--104165717	75	2.1	73	86	9	212	41	0	31	26	1.56
104169754--104169836	27	3.0	28	87	5	123	19	3	30	46	1.66
104170040--104170084	22	2.0	23	95	4	83	17	17	22	42	1.89
104175746--104175776	4	7.5	4	92	7	53	0	29	0	70	0.87
104175734--104175776	21	2.0	21	86	8	61	0	30	0	69	0.88
104177006--104177063	24	2.5	22	78	13	64	34	0	8	56	1.30
104176878--104177167	149	2.0	145	87	5	413	41	4	7	46	1.52
104178811--104178845	15	2.3	15	100	0	70	31	8	25	34	1.86
104187558--104187591	18	1.9	18	88	5	52	55	5	2	35	1.39
104199252--104199278	2	13.5	2	100	0	54	51	0	0	48	1.00
104200589--104200623	14	2.6	13	82	8	52	14	5	11	68	1.37
104206112--104206144	15	2.1	16	88	5	50	33	0	30	36	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104206798--104206828	14	2.2	14	100	0	62	80	6	0	12	0.89
104207233--104207292	28	2.1	30	81	12	72	46	3	0	50	1.18
104211835--104211956	51	2.4	51	92	0	199	29	22	13	34	1.92
104211876--104212007	58	2.3	58	86	0	192	27	24	15	33	1.95
104211838--104212007	51	3.2	51	80	11	187	28	22	15	32	1.95
104218773--104218877	51	2.1	50	98	1	201	43	9	6	40	1.63
104220860--104220913	23	2.3	23	90	0	81	48	9	0	42	1.35
104225541--104225568	14	2.0	14	100	0	56	14	0	0	85	0.59
104228371--104228424	28	2.0	27	82	13	67	64	3	7	24	1.35
104232685--104232719	18	2.0	18	88	5	54	54	0	25	20	1.45
104233303--104233327	11	2.3	11	100	0	50	44	20	0	36	1.52
104247697--104247756	27	2.3	26	85	2	75	35	20	23	21	1.96
104250319--104250366	10	4.8	10	87	10	62	22	8	2	66	1.29
104253670--104253715	23	2.0	23	100	0	92	39	4	8	47	1.54
104256740--104256771	15	2.1	16	88	11	50	18	6	0	75	1.01
104256759--104256803	19	2.3	20	88	3	65	20	6	0	73	1.05
104259460--104259533	29	2.6	29	95	0	139	27	14	31	27	1.95
104259517--104259592	29	2.6	29	77	4	82	22	21	35	21	1.96
104267334--104267407	29	2.6	29	95	0	139	27	14	31	27	1.95
104267391--104267465	28	2.6	28	78	2	87	22	20	36	21	1.96
104267334--104267465	58	2.3	57	80	3	131	25	17	33	24	1.96
104270256--104270439	96	1.9	97	88	1	280	27	13	27	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104271077--104271126	10	5.0	10	81	13	59	22	8	2	68	1.26
104277883--104277986	18	5.8	18	69	16	63	34	4	0	59	1.25
104277911--104278029	48	2.6	44	78	12	132	36	3	0	58	1.20
104286304--104286370	14	4.7	14	87	3	80	40	7	14	37	1.75
104286765--104286853	46	1.9	46	88	4	135	44	21	4	29	1.71
104287821--104287889	32	2.3	30	83	11	81	49	20	4	26	1.67
104290038--104290134	3	32.3	3	100	0	194	0	32	0	67	0.91
104292964--104293003	20	2.0	20	85	0	53	35	5	2	57	1.34
104294087--104294120	16	2.1	16	100	0	68	38	0	5	55	1.24
104298242--104298827	143	4.1	143	85	4	765	27	23	19	30	1.98
104299327--104299452	65	1.9	65	87	3	182	51	10	17	20	1.74
104300202--104300283	26	3.2	26	94	0	146	34	7	23	35	1.82
104302959--104303071	1	113.0	1	72	0	82	2	10	0	85	0.73
104302958--104303060	20	5.0	20	82	12	129	1	12	0	84	0.76
104302959--104303071	32	3.6	31	81	11	133	2	10	0	85	0.73
104304503--104304660	81	1.9	81	85	9	217	51	2	17	28	1.58
104307082--104307316	131	1.8	130	84	8	325	32	14	16	36	1.89
104307702--104307763	3	20.7	3	96	0	115	66	0	1	32	1.02
104313861--104313925	31	2.1	31	82	2	78	47	9	6	36	1.60
104313873--104313943	31	2.3	31	85	2	99	40	11	5	42	1.64
104317735--104317783	24	2.0	25	88	4	73	28	6	20	44	1.75
104318252--104318288	3	12.7	3	94	5	67	35	0	0	64	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104318382--104318417	3	12.0	3	100	0	72	33	0	0	66	0.92
104318515--104318557	16	2.8	15	86	6	59	30	6	0	62	1.21
104318660--104318691	16	2.0	16	93	0	55	21	21	6	50	1.71
104318703--104318734	13	2.6	13	90	9	50	25	6	3	65	1.31
104318804--104318841	12	3.1	13	81	11	53	31	5	0	63	1.17
104318873--104318940	22	3.0	22	80	6	75	19	5	5	69	1.31
104322841--104322870	14	2.2	14	94	5	53	56	0	36	6	1.26
104326973--104327102	51	2.6	52	91	7	209	34	6	23	35	1.80
104326973--104327102	26	5.2	25	91	6	196	34	6	23	35	1.80
104332787--104332921	26	5.2	26	97	0	227	34	5	24	36	1.78
104339354--104339433	39	2.1	39	100	0	160	32	8	35	23	1.86
104344157--104344193	19	1.9	19	100	0	74	59	5	16	18	1.55
104346546--104346577	6	5.3	6	100	0	64	18	15	31	34	1.93
104348669--104348696	2	14.0	2	100	0	56	50	0	0	50	1.00
104350178--104350233	30	1.9	27	82	13	67	39	12	1	46	1.52
104353993--104354031	18	2.2	18	86	4	53	56	2	0	41	1.13
104354430--104354461	5	6.4	5	92	0	55	0	21	0	78	0.76
104355706--104355768	19	3.3	19	77	4	54	46	0	3	50	1.17
104359473--104359537	26	2.5	27	78	9	64	69	9	3	18	1.29
104364322--104364424	24	4.2	25	88	4	156	35	24	5	33	1.79
104364322--104364424	51	2.1	48	90	5	161	35	24	5	33	1.79
104370006--104370113	26	4.2	26	87	0	162	34	24	7	34	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104375548--104375660	56	2.0	56	96	0	208	29	20	20	30	1.97
104378828--104379003	46	3.8	45	78	12	196	21	20	28	29	1.98
104378825--104378996	93	1.8	93	93	0	299	21	20	29	28	1.98
104383089--104383122	17	2.0	17	88	0	50	32	5	0	61	1.20
104383422--104383478	26	2.1	27	87	3	80	31	5	1	61	1.28
104383729--104383787	24	2.3	25	85	8	75	28	0	8	62	1.24
104383750--104383805	25	2.3	25	87	3	78	30	3	5	60	1.36
104388482--104388565	5	16.8	5	77	14	66	80	5	13	0	0.87
104389882--104389928	2	23.5	2	82	8	60	51	2	2	44	1.25
104394687--104394753	20	3.5	20	67	19	52	55	0	10	34	1.34

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378