Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr01 113035596 
Parameters: 2 7 7 80 10 50 1000
Length:  113035596

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   

This is table  163  of  378  ( 45343 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47608647--47608672
2
13.0
2
100
0
52
50
0
0
50
1.00
47610215--47610381
46
3.6
46
73
13
153
28
27
20
22
1.99
47610222--47610394
93
1.9
93
90
0
274
27
27
21
23
1.99
47615932--47616091
29
5.5
29
88
1
223
27
15
31
25
1.96
47616079--47616179
28
3.5
28
86
6
114
29
13
26
29
1.94
47619106--47619225
40
3.0
40
93
2
199
20
22
28
29
1.98
47619110--47619240
40
3.3
40
88
8
178
21
22
26
29
1.99
47623378--47623507
66
2.0
65
89
4
199
18
30
25
25
1.98
47627527--47627690
42
3.9
41
81
6
186
27
14
26
31
1.95
47627527--47627692
85
2.0
84
85
3
226
27
14
26
31
1.95
47635398--47635507
42
2.6
42
95
0
193
30
15
24
29
1.96
47635643--47635672
16
1.9
15
93
6
51
26
13
23
36
1.92
47637079--47637121
2
21.5
2
92
0
68
44
2
2
51
1.27
47644082--47644115
7
4.7
7
85
7
50
85
0
11
2
0.71
47644084--47644121
15
2.4
16
83
16
53
84
0
13
2
0.73
47646636--47646683
24
2.0
24
84
12
62
58
0
33
8
1.28
47651009--47651331
48
6.7
48
78
3
202
28
18
28
24
1.98
47651048--47651333
96
3.0
97
79
8
314
28
18
28
24
1.98
47657493--47657675
92
2.0
92
95
0
330
44
22
10
22
1.84
47659075--47659105
13
2.4
13
100
0
62
12
22
6
58
1.58
47661195--47661359
35
4.7
35
80
1
179
34
21
10
32
1.89
47666096--47666154
30
2.0
30
90
6
93
47
10
8
33
1.68
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47666715--47666751
19
2.0
18
89
5
56
16
40
24
18
1.90
47668819--47669121
27
11.2
27
86
4
387
27
23
8
39
1.84
47668846--47669160
81
3.9
81
81
5
215
28
23
8
39
1.85
47670354--47670401
25
1.9
25
91
0
78
35
25
14
25
1.94
47670445--47670528
20
4.2
20
95
0
150
34
11
21
32
1.90
47670449--47670523
11
7.4
11
68
17
63
36
13
20
30
1.91
47670575--47670716
24
6.0
24
87
4
191
29
22
21
26
1.99
47670574--47670717
47
3.0
47
87
4
200
30
22
20
26
1.98
47670913--47670973
31
2.0
31
86
0
86
29
16
27
26
1.97
47673766--47674040
27
10.2
27
87
5
369
27
24
9
39
1.85
47673766--47674079
81
3.9
81
82
5
188
28
23
9
38
1.86
47674831--47674858
8
3.5
8
100
0
56
42
21
21
14
1.88
47675277--47675323
25
1.9
25
86
4
69
36
23
14
25
1.93
47675367--47675450
20
4.2
20
92
0
141
34
10
21
33
1.88
47675366--47675438
9
7.4
9
71
17
56
34
9
20
35
1.85
47675495--47675614
23
5.0
24
86
5
156
30
21
21
26
1.99
47683699--47683906
40
5.2
40
84
0
218
25
22
25
25
2.00
47683700--47683906
80
2.6
80
83
4
247
25
22
26
25
2.00
47691570--47691803
123
1.9
123
84
6
314
29
10
25
34
1.89
47691752--47691957
40
5.2
40
81
4
202
25
22
26
25
2.00
47701135--47701234
27
3.7
26
79
13
85
19
26
19
36
1.95
47708958--47709069
27
4.1
27
79
7
102
16
21
23
39
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47708958--47709069
54
2.1
54
85
6
147
16
21
23
39
1.92
47712218--47712254
2
19.0
2
94
5
67
48
0
0
51
1.00
47713227--47713329
38
2.7
38
89
0
152
21
23
26
29
1.99
47713327--47713453
42
3.0
43
94
2
229
11
25
33
29
1.91
47716605--47716652
15
3.0
16
85
14
64
77
0
22
0
0.78
47716607--47716654
11
4.5
10
80
12
51
75
0
25
0
0.81
47718033--47718057
12
2.1
12
100
0
50
24
0
8
68
1.16
47718606--47718771
83
2.0
83
100
0
332
31
9
14
44
1.77
47725437--47725481
21
2.1
21
100
0
90
53
15
4
26
1.61
47725858--47725887
2
15.0
2
100
0
60
50
0
0
50
1.00
47733958--47733989
15
2.1
15
100
0
64
31
6
12
50
1.65
47736469--47736554
37
2.3
37
91
0
145
23
31
20
24
1.98
47736599--47736870
48
5.6
48
96
0
490
30
27
8
33
1.86
47736865--47736972
47
2.3
47
96
3
200
31
29
7
31
1.85
47736598--47736932
96
3.5
97
88
7
330
31
27
7
33
1.85
47736598--47736919
144
2.2
142
88
6
400
31
27
8
33
1.86
47738229--47738253
13
1.9
13
100
0
50
36
16
16
32
1.90
47741674--47741862
41
4.7
41
83
5
197
28
16
23
31
1.96
47741674--47741862
81
2.3
82
84
3
231
28
16
23
31
1.96
47742781--47742816
2
17.5
2
94
5
63
47
0
2
50
1.15
47750392--47750562
93
1.8
93
96
0
315
28
28
21
21
1.99
47750387--47750559
46
3.7
46
78
13
210
28
27
21
21
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47754132--47754178
5
9.4
5
100
0
94
59
0
0
40
0.97
47756327--47756655
180
1.8
181
87
0
489
33
18
8
39
1.81
47757235--47757524
50
5.7
50
77
4
260
32
25
16
24
1.96
47757296--47757478
101
1.8
101
86
4
271
32
25
16
25
1.96
47760420--47760472
26
2.0
26
82
7
63
26
15
20
37
1.92
47761944--47762053
26
4.2
26
97
0
184
36
24
5
33
1.79
47764544--47764590
20
2.4
19
76
13
51
51
0
0
48
1.00
47766465--47766498
9
3.4
10
88
12
52
29
0
0
70
0.87
47766988--47767022
15
2.2
16
90
5
54
37
0
0
62
0.95
47768981--47769026
2
23.0
2
95
0
83
47
0
2
50
1.13
47769107--47769149
14
2.9
15
86
6
61
32
6
2
58
1.38
47769641--47769866
119
1.9
120
85
0
310
30
18
16
34
1.93
47773427--47773484
20
2.9
19
75
12
55
48
0
1
50
1.11
47773650--47773700
25
2.1
24
81
3
57
17
5
9
66
1.40
47774199--47774245
9
5.0
9
82
7
58
53
2
4
40
1.32
47774290--47774336
19
2.5
19
75
3
51
57
4
2
36
1.30
47774390--47774418
14
2.0
15
93
6
51
41
0
3
55
1.17
47774650--47774705
19
2.9
19
75
2
58
30
7
1
60
1.33
47774770--47774799
9
3.3
9
100
0
60
50
0
0
50
1.00
47776644--47776676
9
3.7
9
84
15
50
78
9
3
9
1.05
47778436--47778495
30
2.0
30
100
0
120
20
6
20
53
1.67
47781985--47782526
271
2.0
271
95
0
985
31
28
12
26
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47782760--47782789
15
2.0
15
100
0
60
53
0
6
40
1.27
47789227--47789307
12
7.5
11
70
19
55
18
3
2
75
1.07
47789229--47789318
15
5.7
15
77
13
74
21
3
2
73
1.09
47789228--47789289
17
3.8
16
85
12
81
19
3
1
75
1.02
47789228--47789318
17
5.7
16
78
12
80
20
3
2
73
1.08
47789226--47789305
5
16.0
5
77
14
69
18
3
2
75
1.07
47791880--47792057
98
1.8
98
91
2
295
21
16
31
29
1.96
47792686--47792715
15
2.0
15
93
0
51
50
0
10
40
1.36
47795005--47795087
37
2.2
37
86
0
112
27
15
19
37
1.92
47797515--47797547
11
2.9
12
86
13
52
33
0
0
66
0.92
47800332--47800531
104
1.9
104
89
2
312
26
16
27
30
1.97
47805671--47805724
19
2.8
19
71
23
51
27
1
3
66
1.19
47807799--47807844
22
2.0
22
83
8
56
63
0
0
36
0.95
47819027--47819081
29
1.9
29
85
3
76
49
12
1
36
1.52
47820047--47820675
344
1.8
344
97
0
1186
37
10
22
28
1.88
47824281--47824340
14
3.9
14
75
23
57
28
0
1
70
0.97
47824295--47824345
26
2.0
26
85
14
72
35
0
1
62
1.06
47824524--47824567
2
22.5
2
95
4
81
50
0
0
50
1.00
47828156--47828189
18
1.9
17
88
5
50
35
0
2
61
1.11
47837362--47837386
7
3.6
7
100
0
50
88
0
12
0
0.53
47846908--47847070
39
4.2
39
93
0
263
23
20
31
24
1.98
47846908--47847100
39
4.9
39
90
0
251
23
21
31
23
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47854874--47855036
39
4.2
39
93
0
263
23
20
31
24
1.98
47854874--47855066
39
4.9
39
90
0
251
23
21
31
23
1.98
47865946--47865978
14
2.4
14
100
0
66
51
15
6
27
1.66
47867394--47867578
67
2.8
66
85
4
221
35
17
7
39
1.79
47883329--47883510
48
3.8
48
83
4
251
28
18
28
25
1.98
47883327--47883507
96
1.9
96
96
0
335
28
18
27
25
1.98
47884279--47884349
30
2.3
30
87
2
97
21
19
32
26
1.97
47885854--47886003
42
3.5
43
78
12
121
27
17
22
32
1.96
47885854--47886007
43
3.5
44
77
13
149
27
16
24
31
1.96
47887228--47887324
42
2.3
42
100
0
194
18
24
31
24
1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378