Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr01 113035596 
Parameters: 2 7 7 80 10 50 1000
Length:  113035596

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   

This is table  14  of  378  ( 45343 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3968252--3968450
68
2.9
68
88
5
287
26
22
23
27
2.00
3968512--3969323
87
9.3
89
71
9
413
20
22
20
35
1.96
3968469--3968937
175
2.7
172
85
3
632
21
21
20
36
1.95
3968693--3969334
260
2.5
260
94
0
1097
20
23
21
35
1.96
3968468--3969323
43
19.7
43
74
8
488
20
22
20
35
1.96
3969387--3969513
66
1.9
66
96
0
236
35
11
19
33
1.88
3973205--3973242
20
1.9
20
88
0
58
34
2
10
52
1.50
3981112--3981149
20
1.9
20
88
0
58
34
2
10
52
1.50
3984232--3984278
19
2.5
20
89
6
71
42
8
21
27
1.81
3986713--3986755
2
22.0
2
85
4
61
51
0
2
46
1.13
3986706--3986757
12
4.5
11
85
7
59
51
1
1
44
1.23
3986773--3986845
38
1.9
38
83
5
94
68
1
4
26
1.15
3986986--3987033
3
15.0
3
85
12
53
62
4
0
33
1.14
3987104--3987186
3
27.3
3
73
20
59
65
1
3
30
1.17
3987104--3987183
12
6.8
12
75
12
76
65
1
3
30
1.18
3987516--3987589
23
3.3
23
77
9
80
59
29
1
9
1.37
3988026--3988600
44
13.1
44
77
5
446
26
22
18
32
1.97
3988021--3988542
176
3.0
176
95
0
963
26
22
18
32
1.97
3988803--3989309
176
2.9
174
84
3
617
21
21
20
36
1.95
3989040--3989652
129
4.7
132
81
8
727
20
22
21
35
1.96
3989040--3989670
261
2.4
261
94
0
1095
20
22
21
35
1.96
3988802--3989659
43
19.7
43
75
8
533
20
22
20
35
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3989723--3989849
66
1.9
66
95
0
227
36
11
18
33
1.88
3990966--3991026
10
5.9
10
76
5
59
4
3
11
80
0.99
3993829--3993875
19
2.5
20
89
6
71
42
8
21
27
1.81
3996305--3996334
2
15.5
2
93
6
53
50
0
0
50
1.00
3996734--3996869
26
5.2
26
94
0
236
33
5
25
36
1.78
3999636--3999683
3
15.0
3
85
12
53
62
4
0
33
1.14
3999759--3999843
3
28.0
3
73
19
63
64
1
3
30
1.17
3999759--3999840
12
6.7
12
76
16
71
64
1
3
30
1.18
3999763--3999843
18
4.4
18
79
13
76
65
1
3
29
1.17
3999759--3999844
27
3.3
27
71
19
76
65
1
3
30
1.17
4000177--4000243
23
2.9
23
82
4
73
59
28
1
10
1.39
4000324--4000367
13
3.7
13
74
22
51
15
13
50
20
1.78
4000689--4001263
44
13.1
44
77
5
428
26
23
18
31
1.97
4000684--4001205
176
3.0
176
95
0
963
26
22
18
31
1.97
4001003--4001266
132
2.0
132
95
0
474
25
23
18
31
1.98
4001317--4001515
68
2.9
68
84
8
262
26
22
23
28
1.99
4001571--4002390
43
18.8
43
74
11
442
20
22
21
35
1.96
4001534--4002402
176
5.0
173
77
8
685
20
22
21
35
1.96
4001771--4002402
129
4.8
132
80
8
747
19
22
22
35
1.96
4001771--4002401
261
2.4
261
96
0
1138
19
22
22
35
1.96
4002454--4002580
66
1.9
66
96
0
236
35
11
19
33
1.88
4003708--4003758
21
2.4
21
86
0
66
5
0
11
82
0.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4006560--4006606
19
2.5
20
89
6
71
42
8
21
27
1.81
4009041--4009074
2
17.0
2
87
0
50
50
0
2
47
1.16
4009089--4009191
39
2.6
40
75
16
97
62
3
2
31
1.28
4009305--4009360
3
17.0
3
87
10
51
60
3
0
35
1.14
4009305--4009360
12
4.2
13
80
17
62
60
3
0
35
1.14
4009434--4009519
3
28.3
3
73
19
65
65
1
3
30
1.17
4009434--4009516
12
6.8
12
76
16
73
65
1
3
30
1.17
4009434--4009520
27
3.4
27
71
19
78
65
1
3
29
1.16
4009848--4009927
22
3.6
22
76
17
76
55
35
1
8
1.39
4009865--4009911
23
2.2
23
88
11
73
55
31
2
10
1.46
4010482--4010508
2
13.5
2
100
0
54
0
48
0
51
1.00
4012436--4012599
24
6.6
25
71
12
99
17
26
20
35
1.94
4012435--4012550
51
2.3
49
82
8
128
18
25
20
35
1.95
4012458--4012623
24
6.8
24
70
8
102
18
25
21
34
1.96
4012996--4013058
19
3.3
19
100
0
126
15
14
25
44
1.84
4017059--4017186
40
3.3
38
80
6
123
32
26
20
21
1.97
4021382--4021420
2
19.5
2
100
0
78
51
0
0
48
1.00
4025552--4025601
26
1.9
26
100
0
100
32
0
20
48
1.50
4028643--4028694
21
2.5
21
75
6
52
26
34
21
17
1.95
4029305--4029365
3
20.3
3
100
0
122
67
0
0
32
0.91
4032246--4032351
19
5.7
19
95
4
198
36
11
15
36
1.83
4032236--4032359
36
3.4
35
82
17
162
37
10
15
36
1.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4032246--4032351
55
1.9
56
96
3
196
36
11
15
36
1.83
4032346--4032389
22
2.0
21
86
4
61
34
6
15
43
1.74
4037751--4037851
28
3.5
28
86
6
114
29
13
26
29
1.94
4044897--4044997
28
3.5
28
86
6
114
29
13
26
29
1.94
4047173--4047256
28
3.0
28
87
1
123
20
3
29
46
1.67
4047461--4047547
21
4.0
22
70
15
65
16
21
26
35
1.94
4058477--4058523
21
2.3
20
79
17
60
38
0
12
48
1.41
4063904--4063929
4
6.5
4
100
0
52
26
0
0
73
0.84
4064341--4064387
2
23.5
2
100
0
94
48
0
0
51
1.00
4068721--4068833
37
3.1
37
67
14
106
37
9
5
47
1.59
4068857--4068998
59
2.3
61
85
5
191
20
21
14
43
1.87
4069102--4069168
19
3.3
19
69
20
55
1
22
0
76
0.87
4074538--4074572
18
2.0
18
88
5
54
68
0
0
31
0.90
4074826--4074883
22
2.6
22
81
7
64
41
17
5
36
1.72
4074853--4074900
19
2.5
19
75
25
55
33
16
8
41
1.78
4074862--4074915
17
2.9
19
89
10
94
35
14
11
38
1.82
4075265--4075439
45
3.9
45
81
1
190
27
26
13
32
1.93
4075472--4075766
78
3.8
78
88
2
423
25
23
17
32
1.97
4083745--4083779
18
2.0
18
88
5
54
68
0
0
31
0.90
4084032--4084107
22
3.7
21
76
15
68
40
17
6
35
1.75
4084068--4084156
17
4.9
19
91
8
134
35
13
11
39
1.80
4099095--4099120
12
2.2
12
100
0
52
53
7
0
38
1.30
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4102104--4102320
105
2.1
105
93
0
371
30
19
20
29
1.97
4108184--4108216
17
2.0
17
88
5
50
48
36
6
9
1.60
4111177--4111209
17
2.0
17
88
5
50
48
36
6
9
1.60
4112313--4112342
12
2.5
12
94
0
51
33
10
0
56
1.32
4112962--4112996
12
2.9
12
100
0
70
31
0
0
68
0.90
4124897--4125151
87
2.9
87
80
4
289
35
22
21
20
1.96
4124988--4125148
88
1.8
87
89
1
250
34
22
21
21
1.97
4125252--4125417
44
3.8
44
75
10
187
37
22
21
17
1.94
4125304--4125442
43
3.2
43
73
13
158
37
23
17
20
1.94
4125208--4125497
87
3.3
87
89
2
395
35
22
21
19
1.96
4130653--4130686
11
3.1
11
91
8
52
29
8
26
35
1.87
4136675--4136721
24
2.0
24
86
0
67
44
0
2
53
1.12
4136680--4136731
24
2.2
24
83
6
63
46
0
1
51
1.12
4136703--4136764
28
2.3
26
80
5
70
46
0
1
51
1.10
4139146--4139192
2
23.5
2
95
0
85
53
0
0
46
1.00
4145275--4145307
17
2.0
17
88
5
50
48
36
6
9
1.60
4146413--4146442
12
2.5
12
94
0
51
33
10
0
56
1.32
4146984--4147093
24
4.7
23
70
17
64
31
6
2
59
1.37
4147061--4147095
12
2.9
12
100
0
70
31
0
0
68
0.90
4150056--4150105
13
3.9
13
76
10
50
44
10
2
44
1.49
4150900--4151032
62
2.2
61
80
4
142
41
12
4
42
1.62
4151056--4151080
13
1.9
13
100
0
50
40
0
0
60
0.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4151424--4151473
24
2.1
25
85
10
70
44
0
0
56
0.99
4152769--4152833
22
2.9
21
77
11
58
63
1
4
30
1.24
4153175--4153225
3
17.0
3
100
0
102
66
0
33
0
0.92
4155362--4155548
40
4.7
40
90
2
277
31
27
21
19
1.97
4158510--4158554
21
2.1
21
88
8
65
26
2
6
64
1.30
4160026--4160274
128
2.0
127
92
0
417
36
22
14
26
1.92
4160707--4160737
2
16.0
2
93
6
55
51
0
0
48
1.00
4161926--4161981
18
3.5
15
81
18
60
37
10
16
35
1.83
4161905--4162021
19
6.1
19
83
12
150
36
9
15
38
1.80
4167139--4167202
1
64.0
1
74
0
56
87
0
10
1
0.61

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378