genome.fa.s1.2.7.7.80.10.50.1000.129.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr01 113035596 
Parameters: 2 7 7 80 10 50 1000
Length:  113035596

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   

This is table  129  of  378  ( 45343 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36244166--36244286	41	2.8	42	78	9	129	34	26	15	23	1.95
36244131--36244286	85	1.8	85	83	8	210	33	26	16	24	1.95
36244123--36244279	43	3.7	43	77	5	158	32	27	16	23	1.96
36244164--36244283	44	2.8	44	81	3	129	34	26	16	22	1.95
36250863--36250901	20	2.0	20	89	0	60	35	12	12	38	1.82
36250871--36250930	20	3.0	20	78	4	59	35	10	18	36	1.84
36252793--36253021	40	5.8	39	82	5	214	24	22	27	24	2.00
36260853--36261083	40	5.8	40	82	8	233	24	22	29	23	1.99
36260854--36261083	79	2.9	79	81	10	236	24	23	29	23	1.99
36260906--36261084	78	2.3	79	85	5	211	24	23	29	22	1.99
36277783--36277949	55	3.1	54	84	5	221	36	17	24	21	1.94
36277791--36277979	55	3.5	53	82	5	209	36	19	23	20	1.95
36278093--36278125	16	2.0	17	94	5	59	42	3	18	36	1.66
36283104--36283235	29	4.6	29	84	1	140	25	17	32	25	1.97
36290987--36291060	29	2.6	29	95	0	139	27	14	31	27	1.95
36291044--36291121	31	2.6	29	76	7	84	23	19	34	23	1.96
36298953--36299026	29	2.6	29	95	0	139	27	14	31	27	1.95
36299896--36299929	17	2.1	16	88	5	50	52	0	17	29	1.45
36306819--36306896	31	2.6	29	72	7	75	21	20	34	23	1.97
36309487--36309551	29	2.2	29	94	0	112	29	13	30	26	1.94
36317257--36317386	57	2.3	58	97	1	244	29	14	29	26	1.95
36317257--36317386	29	4.5	29	96	1	244	29	14	29	26	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36320560--36320615	11	4.9	11	80	8	58	32	0	3	64	1.11
36322398--36322671	46	6.0	46	89	0	361	40	14	24	20	1.90
36333753--36333966	39	5.5	40	91	5	282	24	22	28	24	2.00
36340854--36341069	40	5.4	40	87	4	262	24	23	27	24	2.00
36345178--36345207	14	2.1	15	93	6	53	0	40	0	60	0.97
36345506--36345559	21	2.6	21	87	0	72	25	35	5	33	1.80
36351380--36351410	15	2.1	15	93	0	53	54	25	0	19	1.44
36354683--36354797	27	4.2	27	85	4	142	37	18	20	23	1.94
36354679--36354794	55	2.1	53	85	6	160	37	17	21	23	1.93
36362124--36362242	27	4.4	26	84	6	148	33	19	22	24	1.97
36362131--36362233	54	1.9	54	91	0	170	31	20	24	24	1.98
36362894--36362945	27	2.0	26	84	3	68	17	26	21	34	1.95
36362976--36363001	2	13.0	2	100	0	52	50	0	0	50	1.00
36366951--36367132	40	4.6	40	88	0	258	26	28	21	23	1.99
36377991--36378157	40	4.2	40	79	6	169	26	22	26	24	2.00
36385992--36386158	40	4.2	40	79	6	169	26	22	26	24	2.00
36408310--36408337	8	3.5	8	100	0	56	42	0	28	28	1.56
36411897--36411996	42	2.4	42	81	11	116	30	29	16	25	1.96
36411957--36412083	48	2.6	48	86	0	173	29	25	17	27	1.97
36414346--36414606	24	10.9	24	98	0	486	20	18	25	35	1.96
36415537--36415803	24	11.1	24	97	0	471	20	17	25	36	1.95
36422776--36423090	24	13.1	24	97	0	549	20	18	25	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36425569--36425831	73	3.6	72	95	1	481	20	19	25	34	1.96
36425569--36425831	24	10.9	24	95	1	463	20	19	25	34	1.96
36426760--36427024	24	11.1	24	95	1	453	20	18	25	36	1.95
36434001--36434315	24	13.1	24	97	0	549	20	18	25	35	1.95
36440282--36440380	42	2.3	42	86	5	137	31	25	19	24	1.98
36440276--36440383	43	2.5	44	83	8	143	31	25	19	24	1.98
36449748--36449777	5	5.8	5	92	7	51	76	0	0	23	0.78
36455303--36455557	55	4.8	54	76	10	226	36	17	23	21	1.94
36462851--36463104	53	4.8	53	80	9	245	35	18	25	21	1.95
36462861--36463057	108	1.8	109	87	5	301	33	17	25	22	1.96
36476514--36476578	32	2.0	32	88	5	96	49	24	18	7	1.74
36479049--36479109	27	2.2	28	82	11	81	24	18	16	40	1.90
36485061--36485132	29	2.5	29	100	0	144	29	13	29	27	1.95
36486767--36486910	39	3.7	39	90	0	234	26	21	29	22	1.99
36486768--36486950	78	2.3	79	89	1	269	24	22	29	22	1.99
36497620--36497786	40	4.2	40	82	2	185	24	26	22	26	2.00
36505605--36505771	40	4.2	40	82	2	185	24	26	22	26	2.00
36515965--36516118	27	5.5	27	82	4	164	31	25	14	28	1.95
36515965--36516118	29	5.5	28	81	6	145	31	25	14	28	1.95
36515965--36516068	55	1.9	55	100	0	208	35	24	13	26	1.92
36518152--36518351	51	3.9	51	91	1	330	29	25	13	31	1.94
36518387--36518432	24	1.9	24	95	0	83	19	21	15	43	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36520230--36520441	40	5.3	39	82	7	203	24	25	23	26	2.00
36526116--36526170	25	2.2	26	78	15	62	49	0	9	41	1.34
36530597--36530707	40	2.8	39	81	9	109	22	28	23	25	1.99
36545432--36545758	162	2.0	162	100	0	654	31	8	28	30	1.88
36557836--36558041	39	5.3	39	81	5	254	33	19	23	22	1.97
36557836--36558068	117	2.0	117	80	6	258	33	20	23	23	1.97
36557838--36558041	78	2.6	78	92	0	336	33	20	23	23	1.97
36565004--36565129	49	2.6	50	86	5	168	28	17	29	24	1.97
36566581--36566665	44	1.9	44	83	4	109	38	14	22	24	1.91
36566818--36567215	55	7.5	52	76	10	308	35	17	24	22	1.95
36566818--36567215	109	3.8	106	79	9	472	35	17	24	22	1.95
36566812--36567203	209	1.9	209	94	0	694	35	16	24	23	1.95
36567027--36567226	108	1.8	109	87	3	296	35	17	25	22	1.95
36569672--36569696	13	1.9	13	100	0	50	0	24	48	28	1.52
36572848--36573016	93	1.8	91	94	2	302	28	28	21	21	1.99
36572843--36573024	44	4.0	44	76	14	190	29	28	20	22	1.98
36573432--36573491	30	2.0	30	90	0	93	30	25	8	36	1.85
36580896--36580954	29	2.0	30	86	3	84	32	22	8	37	1.84
36583794--36583922	42	3.0	41	72	8	107	31	25	14	27	1.95
36600180--36600284	54	1.9	54	96	0	192	29	24	10	35	1.89
36608900--36608963	31	2.1	31	96	0	119	23	21	15	39	1.92
36609155--36609296	47	3.0	47	89	6	198	26	22	21	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36609155--36609296	24	6.0	24	90	4	200	26	22	21	28	1.99
36609347--36609406	20	3.0	20	95	0	111	33	20	10	36	1.86
36609347--36609401	11	5.4	11	70	16	55	30	20	10	38	1.87
36609449--36609496	25	1.9	25	86	0	69	25	16	25	33	1.96
36611904--36612033	40	3.3	39	76	8	136	23	27	23	24	2.00
36611920--36612071	40	3.8	40	78	6	148	22	26	23	27	1.99
36611920--36612069	80	1.9	80	83	8	198	22	26	24	27	1.99
36619784--36619999	40	5.5	40	91	4	298	24	28	24	22	2.00
36619784--36619999	79	2.7	80	88	4	280	24	28	24	22	2.00
36627876--36628093	40	5.5	40	86	3	262	25	27	23	23	2.00
36631463--36631487	5	5.0	5	100	0	50	40	20	40	0	1.52
36632122--36632209	28	3.1	28	62	28	69	35	4	20	39	1.73
36632100--36632222	56	2.2	56	95	1	221	36	4	21	37	1.75
36636013--36636054	11	3.8	11	81	9	50	33	0	23	42	1.55
36641522--36641613	45	2.0	45	97	0	175	28	8	29	33	1.87
36649894--36649958	34	1.9	34	84	6	87	27	18	21	32	1.97
36650743--36650795	3	18.0	3	81	11	65	37	0	1	60	1.08
36650743--36650795	16	3.4	16	84	2	72	37	0	1	60	1.08
36653395--36653424	14	2.1	14	100	0	60	36	13	0	50	1.42
36653583--36653634	6	8.7	6	95	0	95	48	0	1	50	1.12
36653850--36653908	27	2.1	28	96	3	111	28	3	16	50	1.61
36657081--36657113	3	11.0	3	100	0	66	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36657792--36657866	31	2.4	30	84	8	96	53	6	1	38	1.36
36667557--36667682	39	3.2	39	85	4	173	43	27	15	12	1.83
36668633--36668673	18	2.3	19	91	8	68	63	7	0	29	1.21
36678086--36678142	30	1.9	30	85	0	78	45	10	8	35	1.70
36693632--36693664	14	2.3	15	94	5	59	75	0	0	24	0.80
36693805--36693842	12	3.1	12	82	17	51	71	2	0	26	1.00
36694105--36694130	6	4.3	6	100	0	52	15	0	53	30	1.42
36696390--36696430	21	2.0	21	85	4	57	39	0	2	58	1.11
36698083--36698221	43	3.2	43	78	2	136	31	25	14	28	1.95
36698748--36698805	28	2.0	29	93	3	100	31	3	22	43	1.70

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378