Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr01 113035596 
Parameters: 2 7 7 80 10 50 1000
Length:  113035596

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   

This is table  358  of  378  ( 45343 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
107346708--107346749
22
1.9
22
90
9
68
2
28
0
69
1.01
107346842--107346894
27
2.0
27
84
0
70
11
33
30
24
1.90
107347900--107347939
21
2.0
20
85
14
55
37
7
2
52
1.43
107347934--107347971
19
2.1
18
90
5
58
34
0
0
65
0.93
107348850--107348902
17
3.1
16
86
10
70
35
0
1
62
1.06
107359859--107359917
31
1.9
31
100
0
118
25
25
13
35
1.93
107364510--107364536
2
13.5
2
100
0
54
51
0
0
48
1.00
107365087--107365173
31
2.8
32
82
3
104
40
9
13
36
1.77
107370516--107370542
13
2.1
13
100
0
54
40
14
0
44
1.46
107373308--107373344
18
2.1
18
100
0
74
40
0
5
54
1.24
107374276--107374305
16
1.9
16
93
6
53
66
0
0
33
0.92
107375023--107375063
18
2.3
18
100
0
82
48
0
21
29
1.50
107377125--107377155
2
15.5
2
100
0
62
51
0
0
48
1.00
107379165--107379212
16
3.1
16
82
8
55
56
12
2
29
1.48
107379174--107379223
15
3.2
16
86
5
59
60
16
0
24
1.36
107382397--107382564
81
2.1
81
98
0
327
38
16
13
32
1.87
107389525--107389656
65
2.0
65
92
2
221
41
14
12
31
1.83
107389675--107389759
26
3.3
25
69
21
77
40
4
1
54
1.29
107389694--107389773
12
6.4
12
70
18
56
36
2
1
60
1.18
107389679--107389780
51
2.0
51
98
0
195
36
3
0
58
1.23
107389898--107389938
18
2.4
17
84
8
57
65
0
0
34
0.93
107395754--107395783
14
2.1
14
93
0
51
30
6
23
40
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
107401122--107401166
16
2.8
16
82
0
63
60
13
0
26
1.34
107402456--107402489
15
2.2
16
89
5
52
47
0
2
50
1.16
107408380--107408461
43
1.9
43
82
9
105
34
3
10
51
1.55
107408701--107408754
23
2.3
23
78
21
58
31
3
3
61
1.31
107422803--107422837
17
2.0
18
88
5
54
28
0
0
71
0.86
107429008--107429032
13
1.9
13
100
0
50
48
24
12
16
1.79
107438948--107439167
46
5.0
46
84
9
278
21
24
15
39
1.92
107439080--107439155
38
2.0
38
100
0
152
21
26
18
34
1.96
107441303--107441354
11
4.7
11
76
9
52
63
3
0
32
1.12
107442697--107442748
24
2.2
23
86
3
68
51
1
0
46
1.12
107447462--107447493
17
2.0
17
88
11
50
25
15
18
40
1.90
107451059--107451113
13
4.2
13
81
11
60
74
3
0
21
0.97
107454515--107454577
17
3.8
16
79
6
54
12
1
38
47
1.51
107454538--107454650
52
2.1
54
84
9
153
7
0
43
47
1.38
107454556--107454655
53
1.9
52
97
2
191
8
0
45
47
1.32
107461631--107461660
11
2.7
11
89
0
51
60
0
0
40
0.97
107462159--107462213
18
3.2
18
76
19
55
78
0
7
14
0.96
107462176--107462214
17
2.3
17
86
8
53
71
0
10
17
1.12
107463241--107464542
74
16.5
74
70
16
600
33
19
16
30
1.94
107463586--107463852
91
3.0
87
75
13
247
37
19
17
26
1.93
107463959--107464317
72
4.7
75
78
12
293
34
19
15
30
1.93
107463957--107464463
159
3.2
150
75
12
436
34
19
16
29
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
107463957--107464544
79
7.5
72
75
14
433
33
19
16
30
1.94
107464161--107464465
162
1.9
161
85
3
425
34
20
16
28
1.95
107477330--107477380
12
4.0
12
77
20
50
23
0
3
72
1.01
107477418--107477465
17
2.9
16
84
9
60
75
0
8
16
1.04
107489384--107489426
20
2.1
20
83
12
52
46
4
13
34
1.65
107489447--107489511
25
2.6
24
83
16
71
63
4
1
30
1.24
107489574--107489605
12
2.7
12
95
0
55
62
0
0
37
0.95
107489688--107489718
13
2.3
14
94
5
55
51
6
0
41
1.27
107490417--107490461
17
2.5
18
82
7
56
13
2
2
82
0.86
107490421--107490463
8
5.1
8
83
8
50
13
2
2
81
0.89
107492289--107492313
13
1.9
13
100
0
50
72
4
0
24
1.02
107500551--107500592
15
2.7
15
82
10
50
54
2
2
40
1.26
107501624--107501671
18
2.8
16
79
17
51
50
0
2
47
1.12
107505600--107505633
6
5.5
6
89
3
50
85
0
14
0
0.60
107505593--107505633
18
2.2
18
91
8
64
85
2
12
0
0.70
107512138--107512165
14
2.0
14
100
0
56
14
7
35
42
1.73
107518863--107518942
3
25.7
3
85
7
106
61
2
1
35
1.18
107519264--107519549
3
97.3
3
74
13
179
61
1
5
31
1.28
107528074--107528130
24
2.6
20
77
20
60
22
1
40
35
1.65
107528242--107528495
72
3.5
72
84
11
363
23
5
35
35
1.78
107528619--107528643
6
4.2
6
100
0
50
16
0
68
16
1.22
107531490--107531529
3
13.7
3
89
5
64
67
0
32
0
0.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
107531539--107531577
4
9.2
4
86
8
51
71
0
28
0
0.86
107531545--107531576
16
1.9
17
93
6
57
78
0
21
0
0.76
107534551--107534586
17
2.1
18
89
5
56
38
0
0
61
0.96
107545287--107545316
8
3.8
8
100
0
60
66
10
0
23
1.21
107546942--107546967
2
13.0
2
100
0
52
50
0
0
50
1.00
107555515--107555619
34
3.0
35
92
2
185
16
48
12
22
1.79
107556019--107556096
33
2.4
33
82
6
104
64
17
6
11
1.47
107556364--107556403
11
3.6
11
83
12
55
0
52
0
47
1.00
107556919--107556973
2
29.0
2
78
10
53
40
0
7
52
1.29
107557133--107557175
2
21.5
2
90
0
68
46
2
2
48
1.27
107569318--107570278
129
7.4
132
94
3
1666
25
23
19
31
1.98
107569318--107570282
390
2.5
391
94
3
1655
25
23
19
31
1.98
107569364--107570273
217
4.2
216
71
12
736
25
23
19
31
1.98
107570327--107570525
68
2.9
68
90
2
303
26
22
23
27
1.99
107570594--107571255
43
15.4
43
71
11
315
20
20
22
35
1.96
107570626--107571484
257
3.3
260
91
5
1282
19
21
22
35
1.96
107570543--107571474
86
10.8
87
72
12
475
20
21
21
35
1.96
107571537--107571663
66
1.9
66
96
0
236
35
11
19
33
1.88
107572792--107572840
1
49.0
1
79
0
53
0
0
10
89
0.48
107575624--107575670
19
2.5
20
89
6
71
42
8
21
27
1.81
107578494--107578576
3
27.3
3
73
20
59
65
1
3
30
1.17
107578492--107578573
12
6.5
12
76
17
69
64
1
3
30
1.18
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
107578494--107578576
18
4.6
18
78
14
73
65
1
3
30
1.17
107578492--107578577
27
3.3
27
72
18
74
65
1
3
30
1.17
107578910--107579009
23
4.5
22
75
14
80
59
32
1
8
1.33
107578909--107578988
22
3.6
22
78
9
63
62
27
1
8
1.32
107579891--107579917
14
1.9
14
100
0
54
74
0
0
25
0.83
107582627--107582657
2
15.5
2
100
0
62
48
0
0
51
1.00
107594306--107594583
46
6.0
46
88
3
364
40
14
24
21
1.89
107594306--107594578
92
3.0
92
90
2
415
41
13
24
20
1.89
107614166--107614301
66
2.0
67
88
1
202
36
7
2
54
1.41
107614166--107614271
33
3.2
31
68
16
79
38
7
1
51
1.41
107614799--107614826
11
2.5
11
100
0
56
10
46
17
25
1.80
107616681--107616754
26
2.8
24
74
22
60
32
6
4
56
1.44
107616680--107616754
25
2.8
26
73
20
66
33
6
4
56
1.44
107616690--107616740
25
2.1
24
85
10
68
31
7
3
56
1.46
107618382--107618413
10
3.2
10
95
0
55
15
0
18
65
1.27
107628102--107628140
18
2.2
18
86
9
53
58
2
0
38
1.12
107632938--107632998
16
3.9
16
78
4
61
29
0
14
55
1.40
107632953--107632991
15
2.5
16
83
8
53
35
0
5
58
1.20
107633727--107633865
71
2.0
71
100
0
278
28
30
12
28
1.94
107640779--107640826
19
2.4
19
79
6
51
25
0
6
68
1.12
107653898--107653973
38
2.0
38
97
0
143
25
28
11
34
1.91
107654937--107654981
10
4.8
10
78
13
51
31
0
0
68
0.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
107655132--107655176
2
22.5
2
90
0
72
44
0
0
55
0.99
107659514--107659625
56
2.0
56
100
0
224
26
30
12
30
1.93
107660356--107660388
2
16.5
2
93
0
57
51
3
0
45
1.16
107662370--107662416
24
2.0
24
82
0
58
42
4
2
51
1.33
107669757--107669782
2
13.0
2
100
0
52
50
0
0
50
1.00
107682075--107682108
2
17.5
2
93
6
61
50
0
0
50
1.00
107682804--107682837
17
2.0
17
100
0
68
17
17
17
47
1.84
107683630--107683669
20
2.1
19
85
4
53
40
5
7
47
1.54
107686821--107686863
15
2.8
15
78
3
50
30
0
2
67
1.03
107687682--107687714
14
2.3
15
89
5
50
54
0
0
45
0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378