genome.fa.s1.2.7.7.80.10.50.1000.113.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr01 113035596 
Parameters: 2 7 7 80 10 50 1000
Length:  113035596

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   

This is table  113  of  378  ( 45343 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31446288--31446592	27	11.3	27	82	7	307	39	19	9	31	1.84
31446288--31446619	54	6.1	54	80	3	344	39	18	10	31	1.85
31446288--31446596	81	3.8	80	81	5	352	39	19	9	31	1.84
31446648--31446809	27	6.0	27	85	0	207	35	17	20	26	1.94
31446641--31446808	54	3.1	54	89	0	255	36	16	19	27	1.93
31447014--31447108	25	3.8	25	95	0	163	25	25	23	26	2.00
31447014--31447144	25	5.2	24	85	8	129	29	22	22	25	1.99
31449838--31449881	20	2.3	20	84	7	56	15	36	29	18	1.92
31451615--31451935	96	3.3	94	81	7	353	24	27	19	28	1.99
31451615--31451933	144	2.2	146	84	4	396	25	26	20	27	1.99
31451615--31451948	48	6.9	48	83	4	289	25	27	19	27	1.99
31454284--31454362	33	2.4	33	85	2	106	20	20	36	22	1.95
31461725--31461830	40	2.7	40	86	2	133	41	19	27	11	1.86
31461703--31461825	20	6.1	20	73	11	72	42	18	26	12	1.86
31461700--31461820	60	2.0	62	81	12	144	42	19	26	12	1.86
31465059--31465084	12	2.2	12	100	0	52	15	23	34	26	1.94
31466787--31466825	21	1.9	20	89	5	60	41	25	7	25	1.82
31474165--31474234	27	2.6	27	95	2	122	32	27	11	28	1.91
31482074--31482143	27	2.6	27	97	2	131	31	27	12	28	1.93
31484171--31484229	28	2.1	28	100	0	118	38	27	6	27	1.81
31485521--31485599	36	2.2	36	100	0	158	17	22	10	49	1.77
31488600--31488726	28	4.5	29	92	3	199	28	12	25	33	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31488600--31488726	57	2.2	56	93	4	211	28	12	25	33	1.93
31493449--31493615	80	2.1	80	82	5	196	26	22	27	23	1.99
31493449--31493615	40	4.2	40	76	9	155	26	22	27	23	1.99
31495727--31495846	46	2.6	46	80	6	127	30	19	26	24	1.98
31502033--31502165	46	2.9	46	85	2	169	27	18	30	24	1.98
31502220--31502349	49	2.7	49	79	2	145	29	20	28	22	1.98
31508016--31508042	2	13.5	2	100	0	54	48	0	0	51	1.00
31510548--31510605	21	2.8	20	76	7	53	18	36	20	24	1.95
31514265--31514559	47	6.3	47	92	0	464	27	28	8	35	1.86
31518072--31518459	40	9.7	40	91	0	535	24	28	21	25	1.99
31518513--31518587	38	2.0	38	84	10	100	22	26	18	32	1.97
31520842--31521136	47	6.3	47	91	0	455	27	28	8	35	1.86
31533802--31533839	2	19.0	2	100	0	76	50	50	0	0	1.00
31536688--31536871	40	4.6	40	88	3	237	25	20	25	28	1.99
31545113--31545263	40	3.8	40	77	11	132	26	23	26	23	2.00
31545153--31545279	40	3.2	40	77	4	123	23	24	29	22	1.99
31550422--31550453	16	2.0	16	100	0	64	50	12	6	31	1.65
31550583--31550800	40	5.5	40	87	7	293	23	22	27	26	2.00
31558559--31558773	39	5.5	40	88	6	307	24	23	26	25	2.00
31558555--31558773	79	2.8	78	88	6	318	25	23	26	25	2.00
31560004--31560046	18	2.3	19	80	4	52	32	4	20	41	1.73
31560060--31560266	40	5.2	40	88	4	296	24	22	27	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31568739--31568858	47	2.6	47	81	6	138	27	18	29	25	1.98
31570003--31570041	21	1.9	20	84	5	51	10	35	28	25	1.89
31575332--31575453	47	2.6	47	84	2	138	31	27	16	24	1.96
31578657--31578753	34	2.9	32	84	4	104	25	19	25	28	1.99
31580875--31581051	24	7.4	24	90	0	291	38	24	16	20	1.92
31580875--31581051	48	3.7	48	98	0	345	38	24	16	20	1.92
31588692--31588816	24	5.2	24	90	0	205	37	26	16	20	1.93
31588692--31588816	48	2.6	48	98	0	241	37	26	16	20	1.93
31595585--31595804	112	2.0	112	98	0	422	41	5	19	34	1.73
31596287--31596359	28	2.6	27	77	12	76	34	10	24	30	1.90
31598679--31598861	37	4.8	37	80	13	187	26	18	28	26	1.98
31598791--31599115	48	7.3	42	79	10	235	28	16	26	29	1.97
31598815--31599002	48	3.9	48	90	4	299	30	17	23	28	1.97
31609269--31609331	26	2.4	26	78	0	72	31	19	17	31	1.95
31609588--31609684	34	2.9	34	79	1	97	25	22	24	26	2.00
31611014--31611072	29	2.0	31	80	12	70	40	20	1	37	1.63
31617851--31617953	28	3.6	28	79	10	120	26	34	12	26	1.92
31617836--31617946	57	1.9	57	89	3	170	25	36	14	24	1.93
31623355--31623638	49	5.7	49	80	4	327	28	25	19	26	1.98
31623356--31623643	100	2.9	100	93	2	506	28	25	19	26	1.99
31643108--31643134	14	1.9	14	100	0	54	22	7	11	59	1.56
31643555--31643580	13	2.0	13	100	0	52	30	0	15	53	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31650442--31650496	27	2.0	27	82	6	67	50	0	3	45	1.19
31653424--31653518	25	3.8	25	75	5	93	28	24	21	26	1.99
31661166--31661214	25	2.0	25	91	0	80	30	22	20	26	1.98
31661165--31661234	25	2.8	26	78	8	74	31	25	18	24	1.98
31664984--31665111	47	2.8	44	80	13	143	28	18	30	22	1.98
31665396--31665420	13	1.9	13	100	0	50	40	28	32	0	1.57
31667594--31667645	24	2.2	23	89	3	77	53	19	19	7	1.68
31667746--31667825	29	2.8	29	86	3	108	32	16	27	23	1.96
31670788--31670998	43	4.9	42	94	2	350	12	23	33	30	1.92
31671313--31671399	45	1.9	45	90	0	138	24	20	26	28	1.99
31675072--31675155	40	2.1	39	82	6	98	27	30	15	26	1.96
31683543--31683703	38	4.0	38	78	13	178	30	25	16	27	1.97
31687549--31687651	29	3.6	29	87	0	143	25	33	15	26	1.95
31695575--31695677	29	3.6	29	87	0	143	25	33	15	26	1.95
31705007--31705166	29	5.5	29	82	4	180	25	31	16	26	1.97
31710946--31710992	23	2.0	23	83	0	58	29	6	8	55	1.55
31711189--31711221	17	1.9	17	93	0	57	27	6	9	57	1.53
31715728--31715842	29	4.0	29	82	2	126	29	13	27	28	1.95
31721306--31721634	48	6.9	48	95	1	572	33	6	29	30	1.82
31721308--31721634	95	3.4	96	95	1	577	33	6	29	30	1.82
31721306--31721638	143	2.3	143	96	0	612	33	6	30	30	1.82
31721774--31721949	37	4.8	37	92	0	282	24	17	31	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31725760--31725820	16	3.8	16	84	0	59	42	27	11	18	1.84
31725779--31725816	8	4.8	8	90	0	58	36	28	13	21	1.91
31725770--31725816	24	2.0	24	82	0	58	40	27	12	19	1.88
31725975--31726013	16	2.4	16	91	8	62	51	23	20	5	1.67
31726135--31726169	18	1.9	18	100	0	70	20	22	40	17	1.92
31726255--31726322	29	2.4	29	85	2	84	27	17	26	27	1.98
31732059--31732101	14	3.1	14	74	12	52	39	4	0	55	1.20
31732997--31733352	131	2.7	131	84	3	432	30	17	18	33	1.94
31740218--31740253	14	2.6	14	100	0	72	19	19	13	47	1.83
31743933--31743977	12	3.6	13	77	16	51	55	0	4	40	1.20
31744885--31744961	40	1.9	41	82	12	97	19	18	27	35	1.95
31745121--31745302	50	3.6	51	71	8	149	30	11	19	37	1.88
31745373--31745397	2	12.5	2	100	0	50	48	0	0	52	1.00
31747496--31747652	39	4.0	39	90	2	201	30	28	22	19	1.98
31747512--31747652	39	3.6	40	91	2	216	29	26	23	20	1.99
31763298--31763511	84	2.7	78	91	4	329	30	28	20	20	1.97
31763298--31763511	39	5.3	39	87	6	311	30	28	20	20	1.97
31769825--31769973	79	1.9	78	87	4	219	53	16	18	12	1.72
31771244--31771409	89	1.9	89	79	5	192	31	19	21	26	1.98
31771058--31771813	263	2.9	263	84	4	969	31	18	24	25	1.97
31773743--31773775	17	1.9	17	93	0	57	27	6	9	57	1.53
31781259--31781410	40	3.8	40	84	3	180	28	22	26	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31798887--31798982	42	2.3	42	85	0	120	31	18	19	30	1.96
31799770--31799846	38	2.0	38	92	0	127	20	35	20	23	1.96
31813916--31814183	47	5.7	48	76	12	207	26	17	30	25	1.98
31814052--31814181	49	2.7	49	84	8	160	27	18	27	26	1.98
31816896--31817024	50	2.5	51	87	5	181	35	16	22	25	1.94
31817000--31817148	31	4.8	31	88	1	219	28	18	25	26	1.98
31817171--31817295	47	2.7	47	84	1	162	27	15	28	29	1.96
31817266--31817380	42	2.7	43	86	4	162	30	13	26	28	1.94
31819686--31819853	46	3.6	46	75	6	160	22	26	19	31	1.98
31822645--31822682	18	2.1	18	100	0	76	50	13	10	26	1.73

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378