genome.fa.s1.2.7.7.80.10.50.1000.142.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr01 113035596 
Parameters: 2 7 7 80 10 50 1000
Length:  113035596

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   

This is table  142  of  378  ( 45343 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40566271--40566324	18	3.1	18	81	2	56	48	0	1	50	1.11
40566870--40566898	2	14.5	2	100	0	58	51	0	0	48	1.00
40575733--40575886	43	3.6	44	77	15	162	31	25	18	24	1.97
40575733--40575888	44	3.6	42	77	17	142	30	26	18	24	1.98
40575730--40575891	86	1.9	85	85	8	222	32	25	17	24	1.97
40577534--40577576	18	2.4	18	100	0	86	16	23	18	41	1.89
40581170--40581212	4	10.2	4	81	18	52	25	0	0	74	0.82
40581171--40581205	18	1.9	18	94	0	61	28	0	0	71	0.86
40590717--40590884	40	4.2	40	77	3	151	23	26	22	27	2.00
40597920--40598087	40	4.2	40	79	3	160	23	26	23	27	2.00
40597936--40598085	80	1.9	80	83	8	198	22	26	24	27	1.99
40602944--40603111	40	4.2	40	78	3	160	23	26	22	26	2.00
40602960--40603109	80	1.9	80	82	8	189	22	27	23	26	2.00
40605409--40605491	6	16.0	5	83	16	75	78	1	0	20	0.82
40605404--40605487	9	9.8	9	79	17	90	77	1	0	21	0.84
40605397--40605493	14	7.2	13	70	24	67	75	2	0	22	0.91
40611858--40612041	79	2.3	80	78	8	196	25	28	21	24	1.99
40611851--40611989	40	3.5	40	81	4	131	24	29	21	24	1.99
40613708--40613825	45	2.7	46	84	6	172	26	17	28	27	1.98
40614129--40614292	38	4.3	38	85	3	213	22	20	25	31	1.98
40614285--40614409	45	2.8	45	92	0	205	20	22	28	28	1.99
40619842--40619959	45	2.7	43	80	6	148	26	16	27	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40620265--40620426	38	4.3	38	88	1	218	20	20	25	32	1.97
40620265--40620426	76	2.1	76	91	0	261	20	20	25	32	1.97
40620419--40620591	45	3.9	45	82	6	201	22	21	29	26	1.99
40640800--40640861	27	2.3	27	85	0	79	40	9	20	29	1.84
40641055--40641128	27	2.7	27	76	0	76	43	10	24	21	1.84
40642615--40642884	46	5.7	47	73	13	193	25	18	30	24	1.98
40649703--40649774	35	2.1	35	97	0	135	27	12	19	40	1.88
40650336--40650647	46	6.6	48	72	15	165	27	17	30	24	1.98
40653667--40653707	19	2.2	19	83	16	50	12	2	4	80	0.97
40653662--40653717	27	2.0	28	86	10	80	12	5	5	76	1.12
40676780--40677205	67	6.4	67	78	3	403	35	15	23	25	1.94
40676776--40677212	134	3.3	134	83	1	466	35	15	23	25	1.94
40676779--40677198	201	2.1	201	81	3	470	35	15	23	24	1.94
40678571--40678600	15	1.9	16	93	6	53	36	0	20	43	1.52
40680173--40680202	15	2.0	15	93	0	51	30	23	33	13	1.93
40680178--40680209	15	2.1	15	94	0	55	31	28	28	12	1.93
40683609--40683642	18	1.9	17	88	5	50	52	11	2	32	1.53
40700165--40700396	48	4.9	47	69	12	143	29	25	18	26	1.98
40700330--40700430	48	2.1	46	85	8	132	30	25	18	24	1.98
40708401--40708489	39	2.3	39	94	0	151	24	21	31	22	1.98
40712984--40713136	39	3.9	39	92	0	252	23	20	32	23	1.98
40712985--40713166	39	4.6	39	89	0	247	23	21	31	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40715838--40715865	13	2.2	13	100	0	56	14	25	42	17	1.87
40717560--40717662	29	3.6	29	78	2	100	20	17	33	28	1.95
40730060--40730119	28	2.1	30	84	6	79	33	8	5	53	1.53
40730215--40730278	29	2.2	28	81	10	67	42	4	7	45	1.54
40730913--40730970	29	2.0	29	100	0	116	24	0	27	48	1.51
40734141--40734527	197	2.0	196	96	0	711	23	19	17	39	1.92
40739828--40739950	54	2.3	54	81	0	138	48	30	1	18	1.58
40740057--40740120	7	9.0	7	77	3	56	23	1	28	46	1.61
40740073--40740123	15	3.5	15	81	2	59	21	1	29	47	1.62
40740359--40740437	7	10.9	7	76	8	59	18	2	36	41	1.65
40740457--40740511	21	2.7	20	80	8	56	21	1	47	29	1.61
40740475--40740511	7	5.3	7	90	0	56	16	0	54	29	1.43
40740614--40740657	16	2.6	17	82	7	54	52	2	2	43	1.26
40740626--40740675	26	1.9	26	87	0	73	50	4	4	42	1.40
40740788--40740818	16	2.0	16	93	6	55	25	0	0	74	0.82
40740924--40741375	116	3.9	114	83	3	573	28	14	26	31	1.95
40744157--40744382	52	4.3	52	87	3	303	49	15	1	33	1.54
40744252--40744382	9	15.0	9	68	13	60	48	17	0	33	1.53
40744202--40744282	18	4.6	18	71	17	71	50	17	1	30	1.54
40748617--40748686	27	2.5	28	88	2	106	28	14	25	31	1.95
40748588--40748698	27	4.0	28	80	10	102	29	13	23	33	1.93
40756538--40756607	27	2.5	28	88	2	106	28	14	25	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40756509--40756619	27	4.0	28	80	10	102	29	13	23	33	1.93
40760568--40760600	13	2.5	13	95	0	57	36	3	6	54	1.41
40760980--40761019	21	1.9	21	89	0	62	30	17	50	2	1.59
40761243--40761323	31	2.5	32	88	4	110	12	3	20	62	1.44
40761379--40761515	43	3.2	43	80	2	150	31	22	18	27	1.97
40765373--40765404	2	16.0	2	100	0	64	50	0	0	50	1.00
40765619--40766121	132	3.8	131	82	5	559	31	25	17	25	1.97
40765587--40766127	66	8.2	66	73	4	392	31	24	17	26	1.97
40766650--40766682	17	1.9	17	88	11	50	36	6	6	51	1.51
40776067--40776115	3	16.3	3	86	0	71	69	2	28	0	1.00
40777752--40777803	16	3.4	16	71	17	56	48	0	0	51	1.00
40777746--40777803	29	2.0	30	86	3	82	48	0	0	51	1.00
40777818--40777847	16	1.9	15	93	6	51	56	3	0	40	1.16
40778390--40778451	23	2.7	23	80	16	74	54	0	3	41	1.16
40779055--40779126	31	2.3	29	80	17	83	37	8	9	44	1.68
40786236--40786262	3	9.0	3	100	0	54	33	0	66	0	0.92
40795933--40796058	47	2.7	47	86	10	170	25	30	18	25	1.98
40796759--40796802	22	2.0	22	100	0	88	63	18	4	13	1.46
40803828--40803901	29	2.6	29	95	0	139	27	14	31	27	1.95
40803885--40803960	29	2.6	29	78	0	89	22	19	35	22	1.96
40803828--40803960	58	2.3	58	80	2	133	24	17	33	24	1.96
40811711--40811784	29	2.6	29	95	0	139	27	14	31	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40811768--40811843	29	2.6	29	78	0	89	22	19	35	22	1.96
40811711--40811843	58	2.3	58	80	2	133	24	17	33	24	1.96
40817187--40817231	12	3.6	13	77	16	51	55	0	4	40	1.20
40817609--40817637	9	3.2	9	100	0	58	62	0	13	24	1.32
40818385--40818577	50	3.8	51	71	8	162	30	10	19	39	1.86
40818637--40818661	2	12.5	2	100	0	50	48	0	0	52	1.00
40822110--40822138	10	2.9	10	100	0	58	51	17	0	31	1.45
40834631--40834726	29	3.3	29	92	1	158	25	13	31	30	1.94
40838160--40838234	39	1.9	39	100	0	150	44	14	10	30	1.79
40849345--40849391	16	2.9	16	90	0	76	51	14	23	10	1.74
40849607--40849781	28	6.1	29	94	0	284	25	13	30	30	1.93
40853683--40853740	25	2.3	25	87	0	80	22	13	25	37	1.91
40857935--40857969	4	8.8	4	100	0	70	51	22	0	25	1.48
40862381--40862421	21	2.0	20	85	4	55	17	24	43	14	1.86
40870654--40870723	27	2.5	28	93	2	115	27	14	28	30	1.95
40870654--40870735	27	3.0	27	84	8	69	28	15	25	30	1.96
40875691--40875808	41	3.1	41	60	28	98	32	17	28	21	1.96
40875659--40875822	71	2.3	71	100	0	328	35	17	28	18	1.94
40877606--40877670	22	3.0	22	74	0	58	32	18	24	24	1.97
40878019--40878106	27	3.3	27	80	6	81	34	14	12	38	1.84
40878035--40878114	26	3.0	26	73	12	74	32	11	18	37	1.87
40879279--40879349	34	2.1	34	91	0	115	33	25	2	38	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40885243--40885287	23	1.9	24	82	13	58	48	15	6	28	1.70
40892120--40892273	42	3.6	43	80	7	154	28	27	19	24	1.99
40894381--40894417	19	1.9	20	94	5	67	43	8	10	37	1.69
40899470--40899621	43	3.5	43	74	12	150	26	15	24	33	1.95
40901493--40901542	21	2.3	22	93	6	84	34	28	26	12	1.92
40901468--40901554	21	4.0	23	77	10	83	37	24	21	16	1.93
40901929--40901968	15	2.7	14	85	11	53	52	12	0	35	1.39
40905537--40905600	31	2.1	31	90	0	101	23	25	15	35	1.94
40905791--40905932	47	3.0	48	89	5	207	27	22	22	27	1.99
40905791--40905932	71	2.0	72	88	4	216	27	22	22	27	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378