Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr01 113035596 
Parameters: 2 7 7 80 10 50 1000
Length:  113035596

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   

This is table  134  of  378  ( 45343 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38079584--38079634
19
2.7
20
76
14
54
70
1
9
17
1.24
38082894--38082927
17
2.0
17
88
11
52
17
41
29
11
1.85
38084073--38084097
13
1.9
13
100
0
50
64
8
28
0
1.22
38086064--38086176
43
2.9
37
76
14
127
25
15
13
46
1.82
38086108--38086180
37
2.0
36
84
5
94
24
15
12
47
1.79
38087828--38087968
27
5.2
27
80
11
164
34
22
24
19
1.97
38087828--38087971
54
2.7
54
93
2
236
34
22
24
18
1.97
38089040--38089191
37
4.1
37
88
1
207
26
30
19
23
1.98
38089354--38089915
47
12.0
47
90
0
854
26
29
12
31
1.92
38089439--38089514
22
3.3
22
67
22
66
25
30
13
31
1.93
38089461--38089587
25
5.3
25
62
24
76
28
29
11
31
1.91
38096377--38096528
39
3.9
39
95
0
259
23
21
31
23
1.98
38104343--38104493
39
3.9
39
93
2
250
23
21
31
22
1.98
38104343--38104493
77
1.9
79
91
2
252
23
21
31
22
1.98
38104343--38104523
39
4.6
39
88
2
229
23
22
31
22
1.98
38116694--38116866
46
3.7
46
75
13
183
22
20
27
30
1.98
38116691--38116861
93
1.8
93
92
0
288
22
20
28
29
1.98
38124541--38124828
40
7.2
40
90
1
418
25
20
26
27
1.99
38130937--38130969
16
2.1
16
100
0
66
36
0
27
36
1.57
38131322--38131400
38
2.1
38
100
0
158
29
7
25
37
1.83
38134733--38134882
41
3.7
41
82
1
203
28
27
22
21
1.99
38139448--38139475
9
3.1
9
100
0
56
21
0
0
78
0.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38143794--38143850
23
2.4
24
82
2
71
38
19
21
21
1.93
38158190--38158536
49
7.2
48
93
2
549
32
8
29
29
1.88
38160792--38160828
8
4.6
8
100
0
74
24
0
0
75
0.80
38162928--38163194
46
5.8
46
87
5
328
39
14
24
20
1.91
38162915--38163189
92
3.0
91
88
4
374
40
14
24
20
1.90
38164391--38164493
41
2.7
38
81
12
120
34
22
17
25
1.95
38165371--38165409
12
3.0
13
81
11
53
0
25
0
74
0.82
38165369--38165434
26
2.6
26
85
7
82
1
19
4
74
1.07
38166297--38166337
4
10.0
4
85
15
57
24
2
0
73
0.96
38167140--38167181
15
2.6
17
81
7
52
54
0
0
45
0.99
38167282--38167322
17
2.3
18
80
16
50
56
0
4
39
1.21
38195568--38195756
50
3.7
50
77
4
166
23
17
26
31
1.97
38195672--38195851
51
3.5
51
81
4
159
26
17
26
29
1.98
38198864--38198938
34
2.2
34
85
0
105
24
24
24
28
2.00
38200202--38200283
19
4.4
18
73
11
60
21
6
3
68
1.28
38200234--38200291
6
10.0
6
78
10
59
27
1
3
67
1.17
38200208--38200270
25
2.5
25
84
2
72
23
7
1
66
1.27
38202211--38202258
25
1.9
25
83
8
62
14
6
12
66
1.42
38207668--38208047
40
9.6
39
89
4
530
26
20
24
28
1.99
38207668--38208047
80
4.8
80
93
1
642
26
20
24
28
1.99
38214644--38214792
80
1.9
80
81
2
183
22
30
24
22
1.99
38214685--38214792
40
2.7
38
85
8
128
21
29
25
23
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38222576--38222724
80
1.9
80
81
2
183
22
30
24
22
1.99
38222617--38222724
40
2.7
38
85
8
128
21
29
25
23
1.99
38227564--38227732
40
4.2
40
80
4
173
23
26
21
28
1.99
38229401--38229495
29
3.3
29
92
0
154
25
28
14
31
1.95
38237166--38237301
29
4.7
29
86
3
157
24
30
15
29
1.95
38237141--38237300
58
2.8
58
81
0
176
23
33
15
27
1.95
38240700--38240779
34
2.4
34
81
10
94
28
18
23
28
1.98
38247390--38247557
40
4.2
40
82
1
176
25
26
22
26
2.00
38251726--38251822
34
2.8
34
74
12
99
26
17
26
28
1.98
38260273--38260315
20
2.2
20
91
0
68
25
18
27
27
1.98
38262453--38262479
13
2.1
13
100
0
54
14
33
37
14
1.88
38273857--38273890
15
2.3
15
89
0
50
67
0
29
2
1.05
38281764--38281800
13
2.8
13
95
0
65
16
40
29
13
1.86
38285003--38285052
23
2.3
23
83
10
61
44
0
16
40
1.47
38286749--38286804
28
2.0
29
89
3
87
17
46
23
12
1.82
38287753--38288111
46
7.7
45
76
11
316
23
29
19
27
1.98
38287752--38288116
94
3.9
92
79
7
344
23
29
19
27
1.98
38287752--38288074
140
2.3
140
97
0
610
22
29
19
27
1.98
38290273--38290344
6
11.0
6
75
16
63
56
0
1
41
1.07
38290272--38290385
15
7.5
15
77
16
119
52
0
3
43
1.18
38290259--38290376
45
3.0
40
70
29
112
53
0
3
43
1.17
38290274--38290423
45
3.4
45
82
15
163
51
0
3
45
1.17
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38290272--38290385
31
3.7
30
82
12
112
52
0
3
43
1.18
38297052--38297187
51
2.7
51
77
0
146
39
5
12
41
1.67
38299874--38300009
51
2.7
51
77
0
155
39
6
12
41
1.69
38307565--38307606
16
2.5
18
81
14
54
2
33
0
64
1.07
38308914--38309085
60
2.8
60
88
2
256
29
19
25
26
1.98
38308942--38309046
32
3.4
32
68
29
100
27
20
27
23
1.99
38313601--38313649
18
2.6
19
84
9
57
28
4
4
63
1.31
38313588--38313643
25
2.2
25
81
6
60
25
5
5
64
1.36
38315674--38315702
2
14.5
2
100
0
58
51
0
48
0
1.00
38320461--38320524
30
2.1
30
88
0
92
35
10
25
28
1.89
38325149--38325269
62
2.0
62
86
3
172
25
24
15
33
1.95
38332063--38332158
48
2.0
48
97
0
183
34
20
7
37
1.81
38337933--38338096
71
2.3
71
100
0
328
18
28
17
35
1.94
38337933--38338130
71
2.8
70
91
3
258
20
28
17
33
1.95
38345503--38345666
71
2.3
71
100
0
328
18
28
17
35
1.94
38345503--38345700
71
2.8
70
91
3
258
20
28
17
33
1.95
38351928--38352013
43
2.0
43
100
0
172
41
23
11
23
1.87
38353486--38353638
43
3.6
43
76
12
145
33
24
17
24
1.96
38356004--38356083
31
2.6
32
90
6
128
28
27
20
23
1.99
38356091--38356143
26
2.0
26
92
0
88
24
15
18
41
1.89
38356117--38356217
50
2.0
50
94
0
175
27
23
13
34
1.93
38357999--38358085
24
3.6
24
93
0
156
36
25
16
21
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38364342--38364494
49
3.1
49
95
0
261
29
8
32
30
1.87
38364461--38364522
26
2.3
26
94
2
106
30
0
32
37
1.58
38364412--38364571
75
2.1
75
98
1
311
28
5
33
33
1.79
38364367--38364618
124
2.0
125
97
0
479
28
6
32
32
1.82
38364488--38364679
49
4.0
49
96
1
343
28
7
32
31
1.85
38364342--38364667
173
1.9
173
94
0
580
28
7
32
30
1.85
38364781--38364902
37
3.3
37
97
0
226
25
19
33
21
1.97
38366891--38367025
29
4.7
29
98
0
243
25
15
33
25
1.95
38370322--38370633
49
6.4
49
97
0
545
28
8
32
29
1.88
38370735--38370856
37
3.3
37
97
0
226
25
19
33
21
1.97
38379800--38379981
37
4.9
37
90
0
292
25
30
17
25
1.97
38380026--38380793
48
16.0
48
90
0
1140
30
27
6
35
1.82
38383961--38384152
40
4.8
40
96
0
330
26
28
20
25
1.99
38385352--38385496
37
3.9
37
94
0
245
24
32
19
24
1.97
38385541--38386356
48
17.0
48
90
0
1227
31
27
6
35
1.81
38392789--38392867
27
2.9
27
84
0
104
30
17
16
35
1.92
38392832--38393295
27
17.4
27
83
4
503
31
9
19
39
1.84
38392832--38393295
53
8.7
54
82
3
503
31
9
19
39
1.84
38392837--38393306
133
3.5
133
82
5
547
31
9
18
40
1.83
38392837--38393305
80
5.8
80
83
4
471
31
9
18
40
1.83
38396749--38396785
2
18.5
2
100
0
74
51
0
0
48
1.00
38398893--38398924
15
2.1
15
94
0
55
65
0
6
28
1.16
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38401682--38402544
105
8.4
105
89
6
1333
35
5
3
55
1.43
38401788--38401960
57
3.2
57
66
17
168
35
5
4
54
1.41
38402043--38402067
5
5.0
5
100
0
50
20
0
0
80
0.72
38402813--38402922
9
12.0
9
75
12
100
44
14
1
39
1.56
38402793--38402904
56
2.0
56
94
0
197
45
14
1
38
1.55
38408008--38408037
14
2.2
14
94
5
53
36
0
10
53
1.35
38408755--38408820
31
2.1
31
88
0
96
19
10
21
48
1.79
38408892--38409098
86
2.4
86
84
1
281
25
26
18
30
1.98
38408892--38409087
43
4.5
43
82
0
230
26
27
17
28
1.98
38412103--38412211
38
2.8
40
84
8
143
22
23
29
23
1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378