genome.fa.s1.2.7.7.80.10.50.1000.293.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr01 113035596 
Parameters: 2 7 7 80 10 50 1000
Length:  113035596

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   

This is table  293  of  378  ( 45343 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88573786--88573849	32	2.0	32	100	0	128	28	34	9	28	1.88
88573818--88574011	49	4.0	49	93	0	316	28	34	8	28	1.87
88575655--88575727	34	2.1	34	97	0	137	41	12	16	30	1.85
88581310--88581505	40	4.9	40	92	1	306	21	20	28	29	1.98
88587310--88587415	26	4.2	26	86	4	153	32	6	24	36	1.81
88587310--88587415	50	2.1	51	89	3	160	32	6	24	36	1.81
88593159--88593360	40	5.1	40	75	9	148	23	24	27	24	2.00
88593158--88593309	78	1.9	79	84	5	200	25	23	26	24	2.00
88600507--88600556	22	2.3	22	86	3	66	14	26	36	24	1.93
88600798--88600837	20	2.1	19	85	4	53	37	10	10	42	1.72
88608464--88608496	16	1.9	18	88	11	52	51	18	12	18	1.76
88608971--88609147	45	4.0	45	93	0	302	26	29	22	21	1.99
88614591--88614717	47	2.7	47	82	4	148	24	18	29	27	1.98
88614591--88614710	49	2.5	48	83	5	145	25	17	29	28	1.97
88620294--88620357	32	2.0	32	96	0	119	26	15	20	37	1.92
88620790--88620926	46	2.9	46	80	11	154	34	17	21	27	1.95
88620786--88620936	23	6.5	22	79	8	135	33	18	21	27	1.96
88620802--88620936	69	2.0	69	83	5	175	33	18	21	26	1.96
88623310--88623406	28	3.5	28	91	4	153	20	8	25	45	1.79
88624027--88624088	27	2.3	27	91	0	97	27	16	16	40	1.89
88624044--88624194	54	2.8	54	85	2	151	29	8	19	41	1.81
88624042--88624194	81	1.9	81	85	5	211	30	8	19	41	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88624071--88624194	27	4.6	27	84	2	160	30	6	20	42	1.77
88624071--88624194	54	2.3	54	91	0	194	30	6	20	42	1.77
88624190--88624283	27	3.5	27	85	5	120	41	6	21	30	1.78
88624179--88624302	54	2.3	54	79	5	144	34	6	25	33	1.82
88624288--88624354	27	2.5	27	85	4	82	31	10	22	35	1.88
88632031--88632205	40	4.4	40	93	3	275	23	24	27	25	2.00
88639850--88640026	40	4.5	40	92	4	272	23	23	27	24	2.00
88639853--88640026	79	2.2	79	91	4	280	24	22	27	25	2.00
88642276--88642442	40	4.2	40	82	2	185	24	26	22	26	2.00
88650293--88650460	40	4.2	40	82	1	185	24	26	22	26	2.00
88657096--88657141	21	2.2	20	81	7	56	50	0	13	36	1.41
88659241--88659551	48	6.6	47	75	8	193	24	20	25	29	1.99
88659277--88659541	141	1.9	141	83	0	341	23	20	26	29	1.99
88661926--88661965	6	6.5	6	82	5	53	17	5	0	77	0.94
88668805--88668977	93	1.9	93	93	0	301	27	28	21	22	1.99
88668798--88668973	46	3.8	46	76	10	187	28	27	21	22	1.99
88668842--88668992	46	3.2	47	69	20	127	29	25	19	24	1.99
88670863--88670904	15	2.8	15	96	0	75	52	14	21	11	1.73
88670840--88670915	15	5.1	15	78	9	66	55	15	18	10	1.68
88673927--88673977	25	2.0	25	100	0	102	27	33	15	23	1.95
88675887--88675963	15	5.2	15	75	12	70	55	15	16	11	1.68
88675877--88675963	29	3.0	29	77	12	81	56	16	17	10	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88677163--88677334	87	2.0	88	97	1	328	30	22	8	38	1.83
88678925--88679099	46	3.8	45	76	11	167	29	28	20	22	1.98
88678933--88679103	92	1.8	93	88	1	263	28	28	20	22	1.99
88678930--88679118	46	4.1	44	68	20	100	29	27	20	23	1.99
88681466--88681535	15	4.7	15	81	10	90	60	14	15	10	1.59
88684266--88684441	46	3.8	45	76	10	158	29	27	19	23	1.98
88684274--88684445	93	1.8	93	87	0	254	28	27	20	23	1.99
88686463--88686505	22	1.9	23	90	4	70	20	2	53	23	1.57
88690495--88690521	13	2.1	13	100	0	54	22	14	18	44	1.86
88699704--88699768	32	2.0	32	100	0	130	29	12	12	46	1.78
88704246--88704329	42	2.0	42	90	0	132	45	14	10	29	1.78
88707188--88707228	20	2.1	20	90	4	66	41	4	9	43	1.59
88708119--88708149	2	15.5	2	100	0	62	48	0	0	51	1.00
88710191--88710315	57	2.2	58	81	7	139	30	15	22	32	1.94
88711445--88711490	21	2.1	21	81	18	51	21	32	23	21	1.98
88724927--88724985	31	1.9	30	86	3	82	35	18	22	23	1.96
88725153--88725199	23	2.0	23	100	0	94	46	14	8	29	1.74
88732718--88732939	40	5.7	39	85	8	265	25	21	27	26	2.00
88733226--88733278	28	1.9	27	96	3	97	20	16	13	49	1.79
88740876--88741095	80	2.8	79	83	8	277	25	23	26	25	2.00
88740877--88741107	40	5.8	39	84	9	229	25	22	27	25	2.00
88740910--88741095	79	2.3	79	85	6	225	26	23	25	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88740876--88741123	119	2.1	119	81	7	281	25	22	26	25	2.00
88744732--88744852	35	3.5	35	71	4	109	43	15	12	28	1.83
88751609--88751635	13	2.1	13	100	0	54	14	29	40	14	1.86
88758369--88758399	2	15.5	2	93	0	53	51	3	0	45	1.17
88759303--88759447	35	4.1	35	71	6	123	41	17	13	28	1.86
88763044--88763072	2	14.5	2	100	0	58	51	0	0	48	1.00
88764039--88764155	62	1.9	61	84	5	157	50	3	5	41	1.41
88764134--88764182	20	2.7	18	77	22	57	51	2	2	44	1.24
88766390--88766540	40	3.8	39	80	6	153	27	23	27	22	1.99
88766427--88766556	40	3.3	39	80	4	161	24	23	27	24	2.00
88771367--88771537	93	1.8	93	96	0	315	27	29	22	20	1.98
88771359--88771534	46	3.8	46	81	10	232	28	29	21	20	1.98
88773903--88773972	15	4.7	15	81	8	81	57	15	17	10	1.65
88776937--88777107	93	1.8	93	94	0	306	27	29	22	21	1.99
88776929--88777109	46	3.9	46	80	9	224	27	29	21	21	1.99
88782828--88782889	25	2.5	25	82	10	81	20	16	24	38	1.92
88784047--88784118	30	2.4	30	78	0	81	20	26	31	20	1.98
88794829--88794866	18	2.1	19	90	5	60	28	13	15	42	1.85
88795016--88795058	20	2.2	20	82	0	50	55	2	4	37	1.33
88795689--88795759	33	2.3	31	83	11	83	33	0	4	61	1.15
88797589--88797646	26	2.2	26	88	8	91	41	13	18	25	1.88
88800113--88800146	15	2.3	15	89	0	50	44	2	2	50	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88800582--88800621	19	2.2	18	86	4	53	47	5	12	35	1.63
88801283--88801331	14	2.8	19	71	28	63	48	22	6	22	1.72
88805903--88805940	20	1.9	20	94	0	67	26	5	26	42	1.76
88821579--88821786	53	3.9	54	82	4	222	22	24	17	35	1.95
88821598--88821778	55	3.4	54	83	5	215	21	24	18	35	1.96
88821569--88821786	54	4.0	54	81	4	224	21	24	16	37	1.93
88821852--88821914	33	1.9	33	83	6	83	20	22	20	36	1.95
88821811--88821961	78	1.9	79	82	9	191	21	23	19	34	1.97
88822589--88822646	30	1.9	31	89	3	91	29	25	8	36	1.86
88828355--88828401	24	1.9	25	86	4	69	34	25	14	25	1.94
88828445--88828503	20	3.0	20	92	0	100	35	11	20	32	1.89
88828554--88828696	24	6.0	24	90	7	202	28	22	23	25	1.99
88828554--88828696	47	3.0	47	89	7	200	28	22	23	25	1.99
88828554--88828697	71	2.0	72	88	6	213	29	22	22	25	1.99
88828888--88828951	31	2.1	31	96	0	119	39	15	21	23	1.92
88832219--88832427	53	3.9	53	77	5	186	21	23	18	36	1.95
88833240--88833299	30	2.0	29	93	3	102	33	25	6	35	1.82
88839377--88839437	30	2.0	30	83	0	77	31	22	8	37	1.84
88840625--88840649	6	4.2	6	100	0	50	36	16	16	32	1.90
88841294--88841325	15	2.1	15	94	0	55	28	12	25	34	1.92
88843834--88843902	30	2.3	30	90	2	113	20	11	28	39	1.87
88847713--88847928	40	5.4	40	91	2	312	25	27	21	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88849285--88849388	38	2.7	38	93	1	181	23	22	14	40	1.90
88849304--88849405	31	3.1	31	87	9	123	24	20	15	39	1.92
88849596--88849667	24	3.0	24	84	10	85	26	25	20	27	1.99
88849718--88849777	20	3.0	20	90	0	102	31	20	11	36	1.88
88857464--88857570	38	2.8	37	90	5	169	23	22	14	39	1.91
88857487--88857587	31	3.0	31	88	10	130	23	21	15	38	1.92
88857778--88857849	24	3.0	24	84	10	85	26	25	20	27	1.99
88857900--88857958	19	3.0	20	90	5	102	32	20	10	37	1.86
88858001--88858048	25	1.9	25	86	0	69	25	16	25	33	1.96
88861230--88861293	28	2.3	28	100	0	128	20	23	31	25	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378