Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr01 113035596 
Parameters: 2 7 7 80 10 50 1000
Length:  113035596

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   

This is table  352  of  378  ( 45343 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105809868--105809905
20
1.9
20
84
10
51
47
0
10
42
1.38
105811210--105811255
20
2.3
20
79
17
51
34
4
4
56
1.39
105811211--105811262
22
2.5
21
87
12
72
34
3
3
57
1.35
105811207--105811275
26
3.0
22
68
25
52
37
2
2
56
1.29
105811215--105811295
25
3.4
23
75
17
67
35
4
2
56
1.34
105812375--105812425
23
2.2
23
82
6
59
39
19
5
35
1.76
105825217--105825289
36
2.0
36
89
10
114
36
19
23
20
1.95
105829534--105829566
16
2.1
16
100
0
66
21
24
0
54
1.45
105835451--105835476
2
13.0
2
100
0
52
50
0
0
50
1.00
105835658--105835698
6
6.7
6
85
2
55
43
14
21
19
1.87
105835685--105835815
39
3.4
39
85
0
181
41
16
19
22
1.90
105836521--105836575
3
18.3
3
100
0
110
65
0
0
34
0.93
105838376--105838406
15
2.0
16
93
6
55
48
0
0
51
1.00
105841801--105841841
7
6.3
7
81
16
52
48
0
0
51
1.00
105841801--105841841
12
3.2
13
83
16
50
48
0
0
51
1.00
105841801--105841841
19
2.1
19
90
4
64
48
0
0
51
1.00
105849452--105849507
22
2.5
22
91
0
85
19
32
33
14
1.92
105851930--105851980
25
2.0
25
100
0
102
49
7
3
39
1.51
105857804--105857851
24
2.0
24
87
0
69
41
2
16
39
1.60
105857795--105857864
24
3.3
20
70
16
52
37
1
12
48
1.50
105857887--105857960
30
2.4
30
80
6
78
27
22
18
31
1.98
105867175--105867570
68
5.8
69
78
5
335
21
21
19
37
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105867175--105867578
135
3.0
136
80
5
399
22
21
18
37
1.94
105868431--105868483
16
3.3
15
77
12
61
56
3
1
37
1.28
105869992--105870048
3
20.3
3
77
13
50
24
1
3
70
1.13
105870005--105870048
17
2.6
17
85
3
54
27
2
2
68
1.14
105870014--105870096
14
5.5
14
72
14
51
27
2
6
63
1.30
105869992--105870048
8
6.8
9
75
13
50
24
1
3
70
1.13
105871965--105871995
14
2.2
14
94
0
53
77
0
3
19
0.90
105876418--105876448
9
3.3
9
91
8
53
77
0
3
19
0.90
105877340--105877385
20
2.3
20
84
0
56
56
10
0
32
1.34
105879907--105880033
64
2.0
63
98
1
245
34
9
4
51
1.55
105885329--105885372
21
2.1
21
95
0
79
29
29
11
29
1.92
105887170--105887223
23
2.3
24
81
9
58
35
0
9
55
1.32
105887314--105887477
42
3.9
42
80
4
204
27
15
26
30
1.96
105887321--105887477
85
1.9
84
85
4
217
28
16
26
29
1.97
105893553--105893585
13
2.5
13
100
0
66
15
0
45
39
1.46
105893579--105893637
28
2.3
24
85
11
73
25
1
28
44
1.64
105894108--105894149
15
2.7
15
82
13
50
50
38
4
7
1.51
105894232--105894331
13
8.8
12
74
21
99
38
53
0
9
1.33
105894238--105894342
21
4.8
20
80
16
95
36
53
0
10
1.36
105894237--105894325
44
2.0
44
93
0
151
37
53
0
8
1.32
105894759--105894843
23
3.6
23
66
9
55
31
8
2
57
1.41
105899203--105899241
20
2.0
20
85
10
53
41
7
10
41
1.68
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105904135--105905217
206
5.3
206
94
0
1891
29
18
23
28
1.98
105905578--105905623
15
3.0
15
83
3
56
50
36
6
6
1.54
105905598--105905638
15
2.6
15
88
7
55
48
41
7
2
1.44
105906100--105906140
19
2.2
18
86
4
55
26
2
2
68
1.15
105906437--105906476
19
2.2
19
86
8
57
22
15
5
57
1.57
105910872--105910919
2
24.0
2
91
0
78
45
0
54
0
0.99
105911140--105911401
63
4.3
63
90
3
383
29
12
34
23
1.92
105911334--105911476
75
1.9
75
84
2
189
32
14
32
20
1.93
105914358--105914402
11
3.9
11
80
11
54
35
0
2
62
1.08
105915986--105916127
33
4.3
33
70
12
103
32
17
25
24
1.97
105916052--105916141
33
2.7
33
72
6
85
31
17
25
25
1.97
105916155--105916276
45
2.7
45
77
7
124
38
14
22
23
1.92
105916248--105916452
46
4.5
45
90
3
302
46
12
20
19
1.82
105916424--105916479
29
1.9
29
88
0
85
50
7
23
19
1.72
105918471--105918525
25
2.2
25
86
0
74
30
29
12
27
1.93
105921887--105922103
46
4.7
45
76
7
161
25
30
17
25
1.98
105924070--105924097
3
9.3
3
100
0
56
35
0
0
64
0.94
105924198--105924236
19
2.1
19
85
0
51
46
0
2
51
1.14
105924240--105924287
21
2.3
22
82
10
57
68
2
8
20
1.26
105924354--105924437
42
2.0
42
100
0
168
52
2
26
19
1.58
105927949--105927981
17
2.0
17
94
5
59
36
15
0
48
1.45
105928276--105928440
46
3.6
46
89
0
249
18
24
13
43
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105928416--105928467
23
2.4
22
87
6
70
25
19
9
46
1.80
105928379--105928516
69
2.0
69
85
0
186
21
21
14
42
1.89
105928448--105928562
46
2.5
46
97
0
212
23
22
15
38
1.92
105928845--105928898
26
2.1
26
89
6
83
42
16
1
38
1.59
105933397--105933429
17
2.0
17
94
5
59
36
15
0
48
1.45
105933710--105933889
46
3.9
46
90
0
261
18
23
15
42
1.88
105933865--105933915
22
2.4
22
90
3
77
25
19
7
47
1.76
105933894--105934009
46
2.5
46
98
1
225
25
23
14
37
1.93
105933780--105934008
113
2.0
114
87
0
325
22
23
13
40
1.90
105934290--105934343
26
2.1
26
89
6
83
42
16
1
38
1.59
105936723--105936857
26
5.2
26
93
1
227
33
5
24
37
1.78
105936723--105936857
51
2.6
52
96
1
245
33
5
24
37
1.78
105941971--105942003
17
2.0
17
94
5
59
36
15
0
48
1.45
105942289--105942463
46
3.8
46
89
0
251
18
24
14
42
1.88
105942439--105942490
23
2.4
22
87
6
70
25
19
9
46
1.80
105942402--105942539
69
2.0
69
85
0
186
21
22
14
41
1.89
105942471--105942585
46
2.5
46
98
0
221
24
22
14
38
1.92
105942926--105942979
26
2.1
26
89
6
83
42
16
1
38
1.59
105944274--105944306
11
3.1
11
82
8
50
9
30
0
60
1.27
105954365--105954432
26
3.0
22
73
22
59
45
0
1
52
1.09
105954849--105954888
15
2.6
16
80
11
57
40
5
0
55
1.22
105956212--105956291
42
1.9
41
80
14
92
57
1
1
40
1.15
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105958976--105959094
60
2.0
60
83
6
152
6
30
25
37
1.82
105964586--105964688
43
2.4
43
91
0
161
32
32
24
11
1.91
105964664--105964704
16
2.6
16
96
0
73
31
29
29
9
1.89
105964706--105964829
38
3.2
38
89
2
167
27
27
23
21
1.99
105970265--105970322
16
3.6
16
82
13
75
17
1
1
79
0.90
105970265--105970322
5
11.0
5
82
14
64
17
1
1
79
0.90
105976576--105976618
15
2.8
16
82
6
54
53
0
2
44
1.13
105976638--105976674
16
2.2
17
90
4
58
54
10
2
32
1.49
105982402--105982438
20
1.9
20
88
5
58
29
2
5
62
1.31
105991946--105991999
27
2.0
27
96
0
99
40
31
7
20
1.80
106003337--106003375
19
2.1
18
85
4
51
25
17
2
53
1.56
106003554--106003928
46
8.0
46
84
5
419
21
23
16
38
1.92
106003554--106003916
146
2.6
138
82
8
422
21
23
16
38
1.93
106006050--106006101
11
4.7
11
76
9
52
63
3
0
32
1.12
106013944--106013984
15
2.7
15
84
0
55
34
21
39
4
1.75
106014923--106014959
2
18.5
2
100
0
74
48
0
0
51
1.00
106014776--106015147
206
1.8
206
97
0
708
36
11
15
36
1.83
106018396--106018447
11
4.9
11
81
9
63
28
26
0
44
1.55
106018401--106018447
20
2.2
22
88
7
71
31
27
0
40
1.57
106020240--106020277
18
2.1
18
95
0
67
18
26
13
42
1.87
106020666--106021392
116
6.3
115
96
1
1273
40
3
8
47
1.51
106020666--106021392
231
3.2
231
96
1
1302
40
3
8
47
1.51
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106024406--106024941
126
4.3
125
89
1
802
27
21
17
33
1.96
106024995--106025232
96
2.4
98
85
7
297
39
16
2
41
1.61
106027405--106027464
17
3.9
15
75
20
61
11
8
1
78
1.03
106027398--106027476
30
2.7
29
86
7
106
10
8
1
79
0.98
106027434--106027475
21
2.0
22
85
4
59
11
7
0
80
0.88
106027490--106027567
17
4.4
17
69
26
54
12
5
3
78
1.06
106027497--106027568
9
7.9
9
73
7
65
12
4
4
79
1.02
106027794--106027840
20
2.4
19
86
13
60
23
6
0
70
1.10
106027958--106028032
36
2.1
37
85
12
102
20
4
2
73
1.12
106027958--106028011
13
4.3
13
72
13
51
16
5
1
75
1.07

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378