genome.fa.s1.2.7.7.80.10.50.1000.189.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr01 113035596 
Parameters: 2 7 7 80 10 50 1000
Length:  113035596

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   

This is table  189  of  378  ( 45343 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55487765--55487943	39	4.7	39	90	6	276	26	20	29	23	1.99
55487766--55487943	74	2.3	74	90	4	266	26	20	29	23	1.99
55487766--55487983	114	1.9	115	89	2	341	24	22	29	23	1.99
55492593--55492737	39	3.7	39	86	7	172	25	27	22	24	2.00
55492556--55492737	78	2.3	78	78	14	196	25	27	23	23	2.00
55498916--55499180	40	6.6	40	93	2	417	26	28	22	22	1.99
55507043--55507214	45	3.7	46	79	11	199	22	20	27	30	1.98
55507437--55507474	19	2.0	20	85	15	53	36	0	23	39	1.55
55516413--55516543	44	3.0	44	80	7	158	35	29	15	20	1.93
55526752--55526852	29	3.5	29	90	0	148	27	15	32	23	1.95
55528954--55529056	29	3.6	29	80	2	100	20	15	34	29	1.93
55530612--55530641	12	2.5	12	94	0	51	6	30	40	23	1.80
55531885--55531943	25	2.5	24	75	8	57	35	18	22	23	1.96
55541731--55542057	43	7.6	43	85	2	424	26	17	26	28	1.98
55554418--55554448	13	2.3	14	94	5	55	22	12	19	45	1.84
55556383--55556490	26	4.2	26	95	0	198	31	5	26	36	1.80
55557956--55558008	26	2.0	26	85	7	72	37	22	11	28	1.89
55561013--55561203	48	4.0	48	91	2	287	21	17	27	34	1.95
55563515--55563632	28	4.2	28	87	0	164	21	15	37	26	1.93
55563515--55563632	56	2.1	56	90	0	182	21	15	37	26	1.93
55563962--55564150	27	7.0	27	78	10	183	36	17	11	34	1.86
55564127--55564191	27	2.4	28	82	5	71	40	18	15	26	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55563958--55564176	81	2.7	78	77	8	217	35	20	11	32	1.89
55564702--55564760	27	2.2	26	82	8	66	23	16	27	32	1.96
55567863--55568006	39	3.7	39	92	0	243	26	20	29	22	1.99
55567864--55568046	78	2.3	79	90	1	278	24	22	29	23	1.99
55575925--55576067	39	3.7	39	90	2	234	26	20	29	23	1.99
55575926--55576106	77	2.3	79	89	2	267	24	22	29	23	1.99
55578386--55578475	28	3.2	28	91	0	144	18	13	38	28	1.89
55578810--55579038	27	8.5	26	80	7	208	37	16	12	33	1.86
55578810--55579038	81	2.8	81	82	5	277	37	16	12	33	1.86
55578988--55579061	27	2.7	27	82	0	76	37	20	16	25	1.93
55582155--55582207	26	2.0	26	92	0	88	20	16	24	37	1.93
55584233--55584423	56	3.4	56	91	2	296	29	13	24	32	1.94
55584234--55584455	56	4.0	55	87	2	228	27	13	25	32	1.94
55585493--55585544	27	2.0	26	84	3	68	38	21	23	17	1.93
55586195--55586393	27	7.4	27	83	2	238	27	20	17	35	1.95
55592275--55592330	28	2.0	29	85	3	78	14	19	44	21	1.86
55595288--55595509	40	5.6	40	79	5	227	25	25	22	26	2.00
55595325--55595509	80	2.3	81	85	4	250	24	25	23	26	2.00
55603450--55603657	40	5.2	40	82	8	253	26	26	22	24	2.00
55609456--55609484	15	1.9	15	100	0	58	51	0	6	41	1.28
55619387--55619782	151	2.6	151	87	0	569	30	26	18	25	1.98
55619387--55619773	101	3.8	101	75	3	258	29	26	18	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55619384--55619782	50	7.9	50	76	1	339	29	26	18	25	1.98
55620176--55620218	19	2.3	19	87	0	59	46	18	0	34	1.50
55620443--55620501	30	2.0	30	86	0	82	28	27	5	38	1.78
55626289--55626675	50	7.7	50	79	4	350	31	26	16	25	1.96
55626281--55626718	151	2.9	151	88	2	619	32	26	16	25	1.96
55626287--55626720	101	4.3	102	76	5	337	32	26	15	25	1.96
55626333--55626718	50	7.6	52	77	4	254	32	26	16	24	1.96
55629907--55629937	14	2.2	14	100	0	62	32	12	12	41	1.81
55630844--55630879	18	2.0	18	94	0	63	36	25	5	33	1.79
55640869--55641025	43	3.7	42	74	13	160	32	21	17	28	1.96
55642426--55642581	42	3.7	42	81	3	179	30	16	23	29	1.96
55642418--55642579	85	1.9	84	84	3	218	31	17	22	28	1.96
55650905--55651112	40	5.2	40	90	1	303	23	21	28	26	1.99
55658002--55658119	41	3.1	41	60	28	98	32	17	28	21	1.96
55657970--55658133	71	2.3	71	100	0	328	35	17	28	18	1.94
55665572--55665689	41	3.1	41	60	28	98	32	17	28	21	1.96
55665540--55665703	71	2.3	71	100	0	328	35	17	28	18	1.94
55673607--55673774	40	4.2	38	80	6	160	23	26	21	28	1.99
55681674--55681883	40	5.2	40	88	2	305	21	28	24	25	1.99
55683580--55683794	47	4.5	47	89	4	340	26	31	13	29	1.93
55688593--55688765	46	3.8	45	73	18	162	20	19	30	30	1.97
55688590--55688758	90	1.8	91	88	6	261	20	19	30	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55690951--55691008	29	1.9	31	83	13	77	48	0	18	32	1.49
55692149--55692200	25	2.1	25	92	0	86	17	13	32	36	1.89
55693307--55693430	48	2.6	48	92	0	212	24	21	29	24	1.99
55693991--55694034	21	2.0	22	83	12	56	43	4	11	40	1.61
55700887--55700913	2	13.5	2	100	0	54	51	0	0	48	1.00
55703145--55703217	30	2.4	30	81	0	83	53	19	17	9	1.71
55703145--55703217	15	4.9	15	81	0	65	53	19	17	9	1.71
55710354--55710405	22	2.4	22	90	0	86	26	11	26	34	1.91
55724020--55724120	28	3.5	29	86	6	125	29	27	13	28	1.95
55731757--55731857	28	3.5	29	86	6	125	29	27	13	28	1.95
55734460--55734500	22	1.9	21	85	5	55	36	31	0	31	1.58
55738872--55738902	13	2.4	13	88	0	53	22	19	22	35	1.96
55741823--55741971	73	2.0	73	92	2	246	39	14	14	30	1.87
55743066--55743130	23	2.9	22	88	6	69	24	0	26	49	1.51
55743080--55743130	23	2.2	23	96	0	93	21	0	29	49	1.50
55743222--55743275	19	2.8	19	86	5	74	37	1	16	44	1.59
55743806--55744059	125	2.0	126	88	0	375	35	17	17	29	1.93
55747477--55747519	18	2.4	18	92	0	68	41	9	27	20	1.83
55749130--55749264	48	2.8	48	86	4	148	52	6	8	32	1.57
55749366--55749398	17	2.1	16	88	11	50	75	6	0	18	1.00
55760755--55760857	50	2.1	50	94	0	179	35	19	11	33	1.88
55762312--55762579	129	2.1	129	89	1	403	29	13	11	45	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55765789--55766006	40	5.5	40	91	2	307	24	27	24	22	2.00
55773900--55774117	40	5.5	40	92	2	316	24	28	24	22	1.99
55780271--55780415	40	3.6	39	79	3	137	24	24	28	22	2.00
55780272--55780460	80	2.4	81	77	4	186	23	24	29	22	1.99
55788356--55788539	40	4.6	39	75	6	138	26	23	27	22	2.00
55788396--55788584	80	2.4	81	77	4	186	23	24	29	22	1.99
55792320--55792413	47	2.0	47	87	0	134	36	15	15	31	1.90
55797375--55797446	29	2.5	29	81	0	81	41	19	12	26	1.87
55799090--55799180	45	2.0	45	89	0	137	23	14	24	38	1.91
55802236--55802418	79	2.3	81	81	7	205	25	26	23	25	2.00
55802215--55802418	40	5.1	40	79	8	211	25	26	23	25	2.00
55807302--55807653	40	8.8	40	92	1	571	25	27	20	26	1.99
55808891--55808999	37	2.9	37	91	0	173	28	29	19	22	1.98
55809044--55809525	48	10.0	48	95	0	847	32	26	6	33	1.82
55819183--55819364	79	2.3	80	83	8	221	25	26	22	24	2.00
55819162--55819364	40	5.1	40	81	9	229	25	27	22	25	2.00
55825827--55825917	45	2.0	45	91	0	146	26	14	23	36	1.93
55836668--55837046	47	8.1	47	94	0	589	33	11	28	25	1.91
55836928--55837003	22	3.3	22	66	28	59	34	11	28	25	1.91
55837020--55837202	46	4.0	46	94	0	294	34	8	31	25	1.85
55846026--55846215	30	6.5	30	90	6	282	33	13	25	27	1.93
55846026--55846215	59	3.2	60	90	5	282	33	13	25	27	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55846026--55846215	89	2.2	87	90	3	292	33	13	25	27	1.93
55853857--55854016	29	5.5	30	88	8	222	33	13	25	27	1.94
55853857--55854016	59	2.8	57	89	4	223	33	13	25	27	1.94
55862618--55862694	40	1.9	40	100	0	154	19	11	12	55	1.67
55863039--55863174	65	2.1	67	87	2	195	13	27	15	43	1.84
55864943--55864978	5	7.2	5	93	0	54	38	25	0	36	1.56
55870197--55870371	46	3.8	46	78	7	201	22	20	29	28	1.98
55870192--55870363	93	1.8	93	91	0	281	22	20	30	27	1.98
55873888--55873980	42	2.2	42	86	0	123	32	24	27	15	1.95
55881067--55881149	27	3.0	27	82	8	96	30	22	15	31	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378