genome.fa.s1.2.7.7.80.10.50.1000.165.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr01 113035596 
Parameters: 2 7 7 80 10 50 1000
Length:  113035596

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   

This is table  165  of  378  ( 45343 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48166151--48166194	22	2.0	22	81	4	52	52	18	0	29	1.46
48166733--48166878	29	5.0	29	79	9	161	39	15	24	21	1.91
48170293--48170459	40	4.2	39	80	5	142	24	26	22	25	2.00
48174928--48174980	27	1.9	28	81	11	65	0	28	1	69	0.99
48175027--48175062	13	2.7	14	87	12	58	58	0	0	41	0.98
48175027--48175061	18	1.9	18	100	0	70	60	0	0	40	0.97
48178425--48178537	43	2.7	43	82	12	151	23	17	26	31	1.97
48188964--48189118	43	3.6	43	79	8	156	23	18	27	30	1.98
48192169--48192233	27	2.4	27	78	0	76	36	21	18	23	1.95
48192375--48192534	55	2.9	55	89	1	234	25	22	19	33	1.97
48192361--48192537	82	2.2	81	84	1	228	25	21	20	31	1.98
48192375--48192537	27	6.0	27	89	1	227	24	22	20	33	1.97
48194670--48194705	14	2.6	14	86	0	54	25	8	30	36	1.85
48203071--48203113	22	2.0	22	85	0	59	53	0	0	46	1.00
48203085--48203126	21	2.0	22	85	4	59	47	0	0	52	1.00
48208932--48208978	2	24.0	2	95	4	87	51	0	0	48	1.00
48209121--48209154	18	1.9	18	88	5	52	55	5	2	35	1.39
48210279--48210304	2	13.0	2	100	0	52	50	0	0	50	1.00
48210328--48210431	52	2.0	52	98	0	199	28	10	18	42	1.83
48211293--48211411	34	3.3	34	77	16	116	53	0	0	45	1.06
48211367--48211453	26	3.2	26	73	9	84	45	0	2	51	1.13
48214070--48214142	36	2.0	36	97	0	137	63	10	10	15	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48219306--48219364	29	2.0	29	96	0	109	25	13	27	33	1.93
48220802--48220988	27	6.9	26	85	8	225	33	22	24	19	1.97
48220820--48220988	54	3.1	53	88	4	248	33	23	24	18	1.97
48220828--48220991	81	2.0	81	95	2	294	33	23	25	18	1.97
48222607--48222685	26	3.0	26	92	0	140	36	25	6	31	1.81
48223350--48223405	25	2.3	24	81	9	60	55	1	5	37	1.33
48232289--48232372	43	1.9	44	83	7	109	48	0	3	47	1.19
48232634--48232679	23	2.1	23	84	8	60	58	2	2	36	1.22
48232644--48232698	21	2.5	21	82	8	65	60	1	1	36	1.18
48233260--48233317	29	2.0	29	100	0	116	20	17	6	55	1.65
48247488--48247669	40	4.6	41	83	6	196	30	28	19	21	1.98
48250233--48250405	47	3.8	45	80	11	199	22	30	20	26	1.98
48250233--48250402	91	1.8	94	85	7	240	21	30	21	26	1.98
48251485--48251589	50	2.1	50	96	1	194	40	20	6	33	1.78
48252460--48252694	114	2.1	114	100	0	470	28	22	9	40	1.84
48253497--48253533	20	1.9	18	89	10	56	35	21	0	43	1.53
48254079--48254402	164	2.0	164	98	0	630	39	18	12	29	1.87
48256011--48256128	37	3.0	39	80	8	141	34	23	16	24	1.95
48256628--48256663	18	1.9	19	88	5	56	33	27	0	38	1.57
48260774--48260843	35	2.0	35	97	0	131	32	8	12	45	1.73
48264214--48264435	40	5.6	40	92	1	288	22	20	28	28	1.98
48267869--48267920	21	2.5	21	96	0	95	32	15	28	23	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48272476--48272697	40	5.6	40	89	3	272	22	20	27	29	1.98
48275241--48275309	26	2.7	26	81	4	86	37	20	23	18	1.94
48279172--48279247	35	2.1	36	87	2	109	26	11	11	50	1.74
48281544--48281692	80	1.9	80	81	2	183	22	30	24	22	1.99
48281585--48281692	40	2.7	38	85	8	128	21	29	25	23	1.99
48286574--48286910	24	14.1	24	96	1	579	35	25	18	20	1.95
48294680--48295017	24	14.1	24	96	0	588	35	25	18	20	1.95
48302249--48302287	20	2.0	20	94	0	69	35	23	7	33	1.83
48302479--48302589	23	4.9	22	80	8	116	31	19	23	25	1.98
48302479--48302589	46	2.4	45	84	10	129	31	19	23	25	1.98
48304584--48304686	29	3.6	29	90	0	152	24	33	15	27	1.95
48304555--48304686	58	2.3	58	79	0	147	24	34	15	25	1.95
48308215--48308242	12	2.3	12	100	0	56	42	0	17	39	1.50
48310934--48310958	12	2.1	12	100	0	50	68	8	0	24	1.16
48316848--48317055	43	4.8	43	76	5	125	29	27	14	27	1.95
48316847--48317133	86	3.3	86	76	5	224	29	27	14	27	1.96
48316898--48317127	43	5.4	42	81	3	181	30	29	15	25	1.96
48317007--48317125	42	2.8	42	84	1	130	36	28	13	21	1.92
48317490--48317531	21	2.0	21	85	0	57	4	45	14	35	1.66
48319141--48319313	46	3.7	46	77	11	183	22	20	26	30	1.98
48319138--48319308	93	1.8	93	89	2	272	22	20	27	29	1.98
48323112--48323282	93	1.8	93	96	0	315	28	28	21	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48323107--48323279	46	3.7	46	78	13	210	28	27	21	21	1.99
48328648--48328822	46	3.8	46	76	7	201	29	26	21	23	1.99
48328653--48328823	93	1.8	93	92	0	288	28	27	21	22	1.99
48335038--48335210	46	3.7	46	77	13	192	22	20	27	29	1.98
48335037--48335205	93	1.8	93	90	2	277	22	20	28	28	1.98
48339945--48340037	46	2.0	46	100	0	186	23	10	23	41	1.86
48342604--48342688	40	2.1	40	95	0	152	20	23	14	42	1.88
48342980--48343042	20	3.1	20	69	26	60	46	3	3	47	1.34
48342980--48343057	41	1.9	41	92	2	131	46	3	2	47	1.34
48348769--48348818	25	2.0	25	84	0	64	38	6	14	42	1.70
48354834--48355722	442	2.0	443	94	1	1559	37	9	19	33	1.84
48356124--48356161	20	1.9	20	88	0	58	18	13	31	36	1.89
48358445--48358532	35	2.5	35	83	5	124	36	21	17	25	1.94
48368646--48368692	20	2.3	20	100	0	94	36	10	19	34	1.86
48368741--48368812	25	2.9	24	85	6	99	27	25	22	25	2.00
48368742--48368825	25	3.4	24	83	8	98	30	21	22	25	1.98
48369035--48369124	38	2.7	31	73	22	83	32	14	26	26	1.95
48370010--48370075	33	2.0	33	100	0	132	21	18	9	51	1.73
48376255--48376500	89	2.8	88	78	6	237	34	16	21	28	1.95
48378608--48378867	46	5.6	46	80	11	264	23	28	18	28	1.98
48378608--48378871	94	2.8	91	79	10	304	23	29	18	28	1.98
48385417--48385630	48	4.6	46	75	10	186	23	28	18	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48390941--48390990	20	2.5	20	80	6	57	46	8	14	32	1.73
48411585--48411620	15	2.3	16	90	9	65	41	0	0	58	0.98
48411609--48411672	25	2.6	25	68	20	62	56	1	3	39	1.25
48411747--48411786	18	2.2	18	86	0	53	60	0	0	40	0.97
48418703--48418732	15	2.0	15	100	0	60	33	46	6	13	1.69
48422150--48422421	126	2.1	126	85	4	377	29	18	16	36	1.92
48422464--48422602	66	2.2	63	88	7	208	42	12	3	41	1.61
48422487--48422592	35	3.3	31	70	15	99	41	6	4	47	1.50
48422634--48422686	16	3.6	14	78	12	54	50	28	0	20	1.48
48422744--48423285	180	3.0	180	95	0	967	29	19	21	29	1.98
48424436--48424511	21	3.8	20	79	8	73	73	7	1	17	1.13
48426175--48426221	21	2.2	22	84	3	60	23	14	12	48	1.78
48432156--48432280	62	2.0	62	96	0	232	22	16	15	46	1.83
48433088--48433114	13	2.1	13	100	0	54	22	22	25	29	1.99
48437501--48437718	62	3.5	62	84	3	260	23	24	28	22	1.99
48440490--48440524	2	17.5	2	100	0	70	48	0	0	51	1.00
48440825--48440863	18	2.2	18	86	9	53	41	2	0	56	1.13
48440787--48440870	32	2.6	33	74	18	79	48	2	0	48	1.14
48440973--48441019	23	2.0	23	84	8	60	51	0	8	40	1.33
48448735--48448898	87	1.9	86	84	3	222	25	14	23	36	1.93
48449804--48449921	55	2.1	56	84	4	148	34	16	16	32	1.91
48450962--48451000	16	2.5	16	79	4	53	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48459629--48459784	24	6.3	24	74	10	100	28	26	17	26	1.98
48459668--48459788	25	4.9	25	75	8	113	30	27	15	26	1.96
48459695--48459808	50	2.3	50	90	0	183	32	28	14	24	1.95
48460217--48460280	33	1.9	33	96	0	119	35	21	6	35	1.79
48461221--48461251	16	1.9	16	100	0	62	9	25	19	45	1.81
48463086--48463203	41	3.1	41	60	28	98	32	17	28	21	1.96
48463054--48463217	71	2.3	71	100	0	328	35	17	28	18	1.94
48470668--48470785	41	3.1	41	60	28	98	32	17	28	21	1.96
48470636--48470799	71	2.3	71	100	0	328	35	17	28	18	1.94
48477283--48477354	37	1.9	37	97	0	135	29	52	0	18	1.45

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378