Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr01 113035596 
Parameters: 2 7 7 80 10 50 1000
Length:  113035596

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   

This is table  350  of  378  ( 45343 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105309827--105309963
35
3.8
36
84
10
190
38
10
13
37
1.78
105309847--105309951
17
6.1
15
79
16
75
39
8
13
39
1.75
105309819--105309986
73
2.2
73
86
8
223
38
8
14
38
1.77
105309819--105309986
19
8.8
22
80
16
102
38
8
14
38
1.77
105310254--105310289
18
1.9
19
88
5
56
30
0
0
69
0.89
105311481--105311529
22
2.2
23
82
10
57
16
10
10
63
1.52
105314079--105314118
20
2.0
20
90
9
64
22
5
2
70
1.19
105316573--105316602
12
2.5
12
94
0
51
56
23
16
3
1.55
105319476--105319524
10
5.0
10
80
14
57
24
6
2
67
1.24
105343416--105343506
44
2.1
44
87
4
130
30
10
8
49
1.68
105346436--105346543
44
2.4
44
87
3
144
29
23
13
33
1.93
105352564--105352671
44
2.4
44
87
3
144
29
23
13
33
1.93
105357669--105357730
28
2.3
27
78
13
74
46
9
20
22
1.80
105359473--105359531
4
14.8
4
100
0
118
25
0
23
50
1.49
105360059--105360094
6
6.2
6
96
3
65
83
0
0
16
0.65
105360042--105360104
17
3.7
17
81
12
67
76
0
4
19
0.96
105361687--105361733
20
2.3
20
78
7
51
76
4
4
14
1.09
105361688--105361749
18
3.4
18
72
16
56
75
4
4
14
1.13
105361721--105361763
23
1.9
23
85
4
61
74
2
6
16
1.14
105375932--105375986
28
2.0
28
100
0
110
32
20
21
25
1.97
105378031--105378065
16
2.2
16
89
0
52
80
0
2
17
0.84
105393422--105393485
31
2.1
31
96
0
119
31
17
43
7
1.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105397450--105397475
13
2.0
13
100
0
52
15
30
38
15
1.88
105397693--105397741
26
1.9
26
87
4
73
32
14
10
42
1.79
105402099--105402129
16
1.9
16
93
0
53
54
0
29
16
1.42
105403852--105403912
24
2.5
25
81
7
72
24
27
16
31
1.96
105404176--105404241
26
2.7
26
71
19
61
16
19
22
40
1.91
105406470--105406549
38
2.1
38
100
0
160
35
18
13
32
1.90
105424255--105424289
19
1.9
18
88
11
54
17
8
28
45
1.77
105427991--105428266
48
5.8
48
80
3
295
28
21
28
22
1.99
105428000--105428275
96
2.9
96
83
1
347
28
20
28
22
1.99
105427990--105428254
144
1.8
144
86
1
379
28
21
28
22
1.99
105429627--105429733
55
1.9
55
98
0
205
40
13
9
37
1.76
105429625--105429715
26
3.4
26
66
19
69
40
13
7
38
1.73
105433040--105433080
17
2.5
17
92
4
66
24
12
19
43
1.85
105439703--105439739
8
4.6
8
96
0
65
8
24
13
54
1.66
105449508--105449576
17
4.1
18
78
10
74
46
14
5
33
1.68
105449508--105449576
34
2.0
34
88
5
104
46
14
5
33
1.68
105449978--105450021
14
3.1
14
83
6
61
38
25
4
31
1.76
105449978--105450040
29
2.2
29
82
0
72
36
25
4
33
1.77
105450288--105450333
17
2.7
17
79
0
56
52
19
4
23
1.64
105450401--105450484
17
4.8
17
73
4
69
23
17
32
26
1.97
105450445--105450493
18
2.7
19
84
9
66
22
14
34
28
1.93
105450755--105450867
22
5.0
22
81
6
145
36
20
9
33
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105450755--105450866
47
2.4
47
85
4
149
36
20
8
33
1.84
105455483--105455533
3
17.0
3
100
0
102
66
0
0
33
0.92
105456258--105456310
22
2.4
22
83
0
61
62
9
7
20
1.50
105456277--105456318
22
1.9
22
85
0
57
59
14
11
14
1.61
105457030--105457054
13
1.9
13
100
0
50
64
0
16
20
1.30
105465747--105465826
25
3.2
24
71
15
65
32
17
27
22
1.96
105468571--105469034
96
4.9
96
91
1
738
33
8
29
28
1.86
105468571--105469061
47
10.3
47
87
4
691
33
8
29
28
1.86
105480485--105480538
27
2.0
27
88
3
81
55
0
0
44
0.99
105480544--105480605
19
3.3
18
73
22
56
62
3
0
33
1.11
105480357--105480835
232
2.0
239
83
10
613
48
4
5
41
1.47
105480724--105480796
24
3.0
24
71
15
62
60
0
0
39
0.97
105480791--105480835
19
2.3
19
85
11
56
68
2
2
26
1.12
105480902--105480968
28
2.3
30
82
14
79
40
0
1
58
1.07
105480933--105480980
20
2.5
20
82
3
53
35
0
4
60
1.16
105480930--105480971
20
2.1
20
90
0
66
38
0
0
61
0.96
105481060--105481096
19
1.9
19
94
0
65
24
2
0
72
0.97
105481045--105481115
35
1.9
36
83
8
90
30
2
2
63
1.23
105484880--105484917
18
2.1
18
85
9
51
23
18
0
57
1.40
105488072--105488345
48
5.7
48
73
10
229
28
17
29
25
1.97
105488062--105488346
96
3.0
95
81
3
304
28
16
28
25
1.97
105497197--105497363
48
3.5
48
87
1
237
24
16
31
27
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105497228--105497462
48
4.9
47
79
4
220
26
18
29
25
1.98
105497142--105497461
96
3.3
96
81
1
275
27
17
29
25
1.98
105499598--105499667
35
2.0
35
97
0
131
38
17
18
25
1.92
105499708--105499770
28
2.2
29
85
2
83
58
9
14
17
1.61
105499801--105499840
15
2.6
16
84
8
55
7
7
2
82
0.92
105500870--105501002
66
2.0
66
100
0
266
38
16
12
33
1.86
105502682--105502720
7
5.6
7
90
9
62
25
2
0
71
0.98
105503046--105503107
21
2.9
21
86
9
90
43
3
8
45
1.49
105505350--105505396
24
1.9
25
82
4
60
12
17
4
65
1.40
105505559--105505613
19
3.3
19
63
36
54
56
10
0
32
1.34
105505558--105505618
30
2.1
29
96
3
113
57
9
0
32
1.32
105508354--105508507
51
3.2
51
78
12
187
29
21
14
33
1.94
105508354--105508514
44
3.5
44
83
11
214
30
21
15
32
1.94
105516036--105516120
37
2.3
37
97
0
161
32
23
15
28
1.95
105516073--105516185
58
1.9
58
96
0
208
28
24
15
31
1.95
105522199--105522269
29
2.4
30
81
6
83
43
8
7
40
1.62
105522764--105522825
30
2.1
30
87
0
88
59
11
3
25
1.46
105522863--105522932
11
6.4
11
73
6
52
62
1
12
22
1.38
105525370--105525413
23
1.9
23
86
9
63
45
0
0
54
0.99
105525370--105525408
19
2.0
19
90
5
60
46
0
0
53
1.00
105526917--105527146
116
2.0
116
98
0
442
36
12
18
32
1.89
105527303--105527603
3
99.3
3
73
11
204
62
1
7
27
1.32
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105527824--105527862
21
1.9
21
89
5
62
69
7
0
23
1.14
105529379--105529662
143
2.0
143
91
0
460
26
21
20
31
1.98
105530060--105530194
46
2.9
46
76
3
119
26
23
14
34
1.94
105533940--105534018
28
2.8
28
86
0
86
34
11
25
29
1.91
105539869--105539990
32
3.7
33
73
7
97
62
0
8
28
1.29
105539855--105540103
44
5.7
46
72
18
131
62
2
7
28
1.32
105539835--105540103
35
7.5
36
72
12
173
62
1
7
28
1.32
105539835--105540113
3
93.3
3
73
9
196
62
1
7
28
1.34
105546664--105546734
35
2.0
35
86
0
97
29
23
9
36
1.87
105547266--105547308
11
3.9
11
84
9
61
62
0
0
37
0.95
105547266--105547315
11
4.6
10
80
14
55
64
2
0
34
1.05
105547268--105547309
21
2.0
22
95
4
77
61
0
0
38
0.96
105555847--105555871
11
2.3
11
100
0
50
20
20
16
44
1.87
105559207--105559302
31
3.1
31
100
0
192
41
12
19
26
1.87
105563350--105563383
6
5.8
6
96
3
61
11
35
0
52
1.38
105576499--105576527
2
14.5
2
100
0
58
48
0
0
51
1.00
105581016--105581097
37
2.2
37
95
2
148
36
13
21
28
1.91
105585998--105586048
27
1.9
27
88
4
77
56
9
7
25
1.58
105586591--105586628
18
2.2
17
86
9
51
28
2
13
55
1.51
105586847--105586910
20
3.3
20
70
16
71
29
15
7
46
1.74
105586841--105586920
38
2.1
38
100
0
160
27
12
7
52
1.66
105586841--105586899
18
3.2
18
68
17
57
28
13
5
52
1.61
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105586858--105586919
20
3.2
20
69
17
67
27
11
9
51
1.69
105591217--105591309
40
2.3
40
88
0
132
31
23
21
23
1.99
105591640--105591873
22
10.9
21
71
10
132
47
27
0
24
1.58
105591671--105591899
7
32.0
7
73
6
102
45
29
1
23
1.61
105591614--105591940
122
2.6
130
77
14
362
46
28
1
23
1.61
105592245--105592303
3
19.7
3
100
0
118
67
0
0
32
0.91
105597565--105597589
7
3.6
7
100
0
50
40
16
12
32
1.84
105597647--105597785
9
15.6
9
76
4
120
33
1
18
46
1.58
105597712--105597766
26
2.1
26
86
0
74
32
3
14
49
1.61
105598484--105598529
23
2.0
23
91
0
74
43
10
2
43
1.51

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378