Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr01 113035596 
Parameters: 2 7 7 80 10 50 1000
Length:  113035596

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   

This is table  362  of  378  ( 45343 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108481750--108481881
35
3.6
37
82
10
164
32
11
23
32
1.90
108489203--108489368
35
4.6
35
82
8
172
31
10
24
33
1.90
108489203--108489373
75
2.4
75
85
7
221
31
11
23
33
1.90
108491005--108491042
18
2.2
18
85
4
51
52
0
13
34
1.40
108491845--108491966
61
2.0
61
93
0
208
24
13
30
31
1.93
108496189--108496223
16
2.1
16
89
5
52
34
0
2
62
1.10
108500197--108500232
17
2.1
18
94
5
65
27
8
0
63
1.23
108500594--108500631
9
3.9
10
80
19
53
84
0
15
0
0.63
108500940--108501010
31
2.3
31
80
0
88
35
21
18
25
1.95
108504742--108504766
2
12.5
2
100
0
50
0
48
0
52
1.00
108504991--108505031
6
6.8
6
94
0
55
41
2
51
4
1.36
108505869--108505903
2
17.5
2
100
0
70
0
51
0
48
1.00
108509138--108509286
9
15.8
9
68
16
88
59
3
4
32
1.32
108509212--108509266
29
1.9
29
85
3
76
58
1
3
36
1.26
108509221--108509270
19
2.5
20
80
6
66
54
4
4
38
1.38
108511227--108511274
22
2.2
21
85
3
60
50
16
16
16
1.79
108512623--108512655
10
3.3
10
95
0
57
57
0
42
0
0.98
108513120--108513168
20
2.4
21
80
10
57
71
4
14
10
1.27
108515144--108515373
116
2.0
116
86
3
320
30
12
20
37
1.89
108518152--108518186
18
1.9
18
88
11
54
37
2
0
60
1.12
108520610--108520666
23
2.4
23
79
5
60
14
28
17
40
1.88
108526907--108526932
12
2.2
12
100
0
52
92
0
7
0
0.39
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108527200--108527585
139
2.6
148
76
11
357
39
9
10
40
1.71
108550349--108550475
64
2.0
64
98
0
245
25
18
17
39
1.92
108551518--108551549
16
2.0
16
100
0
64
31
18
12
37
1.88
108556823--108556863
21
2.0
21
85
9
57
41
0
0
58
0.98
108557844--108557913
25
3.0
25
80
14
78
44
2
0
52
1.15
108557900--108558021
25
4.8
25
68
22
67
33
3
2
60
1.26
108559151--108559196
15
3.1
15
73
17
51
54
8
8
28
1.61
108563778--108563819
22
1.9
22
85
0
57
47
2
2
47
1.28
108564786--108564827
18
2.3
18
84
11
59
66
2
0
30
1.04
108564852--108564891
21
2.0
20
85
5
53
10
5
12
72
1.26
108564852--108564891
20
2.0
21
85
14
57
10
5
12
72
1.26
108578244--108578345
53
1.9
54
89
2
161
31
15
10
42
1.82
108579322--108579355
13
2.6
13
85
0
50
44
11
0
44
1.40
108582778--108582830
27
2.0
27
88
0
79
26
13
9
50
1.71
108584800--108584840
15
2.5
17
80
11
59
63
0
2
34
1.08
108584791--108584840
24
2.0
26
84
7
68
60
0
2
38
1.09
108596451--108596480
13
2.3
13
100
0
60
20
36
20
23
1.95
108605599--108605629
15
2.1
15
93
0
53
35
22
6
35
1.80
108613273--108613335
20
3.2
20
76
0
72
52
19
1
26
1.55
108613318--108613414
48
2.0
49
82
6
117
45
14
5
35
1.67
108617969--108618105
67
2.0
67
100
0
274
35
10
32
21
1.87
108624200--108624258
31
1.9
31
82
0
73
37
10
11
40
1.76
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108632294--108632336
19
2.2
20
84
8
54
74
0
0
25
0.82
108632322--108632409
10
9.3
10
71
12
69
61
0
2
36
1.09
108632310--108632409
19
5.3
18
75
11
78
63
0
2
35
1.06
108635010--108635101
42
2.1
43
80
4
96
51
5
5
38
1.48
108643767--108643823
28
2.0
28
100
0
114
31
21
7
40
1.80
108643996--108644028
16
2.1
16
94
0
57
36
12
24
27
1.91
108647865--108647894
15
2.0
15
93
0
51
33
16
3
46
1.64
108654982--108655015
17
2.0
17
94
0
59
26
11
8
52
1.67
108654985--108655023
17
2.3
17
86
0
51
33
10
7
48
1.66
108657406--108657563
80
2.0
81
94
1
282
47
4
7
40
1.52
108660402--108660463
29
2.1
29
82
5
72
50
9
9
30
1.67
108660992--108661019
3
9.3
3
100
0
56
35
0
32
32
1.58
108669569--108669601
2
16.5
2
93
0
57
48
0
0
51
1.00
108682793--108682854
25
2.4
25
81
5
70
61
12
12
12
1.58
108685733--108685796
18
3.4
18
75
12
74
12
26
25
35
1.91
108687766--108687793
10
2.8
10
100
0
56
50
0
17
32
1.47
108689777--108689912
26
5.2
26
96
0
245
34
5
23
36
1.77
108691779--108691804
12
2.2
12
100
0
52
26
23
23
26
2.00
108695193--108695293
39
2.6
39
91
0
157
12
24
23
38
1.90
108695200--108695275
21
3.8
20
75
13
77
11
23
22
42
1.87
108698869--108698907
11
3.5
11
82
0
51
2
2
15
79
0.95
108699084--108699122
17
2.4
17
82
4
53
25
0
10
64
1.25
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108713002--108713229
46
5.0
47
90
3
331
21
23
14
39
1.91
108715359--108715410
11
4.7
11
76
9
52
63
3
0
32
1.12
108720299--108720526
46
5.0
46
91
1
341
39
14
23
21
1.91
108721540--108721588
25
2.0
25
88
8
73
55
14
14
16
1.70
108722422--108722468
20
2.3
21
78
10
53
48
2
6
42
1.40
108722461--108722725
120
2.2
120
77
4
257
35
18
8
37
1.82
108722763--108722823
20
3.1
19
79
6
68
39
13
4
42
1.65
108722848--108722908
20
3.0
20
71
17
54
45
4
3
45
1.41
108730346--108730383
19
2.0
19
94
0
67
50
21
18
10
1.76
108731630--108731669
19
2.2
19
90
4
64
55
2
5
37
1.35
108737902--108737930
2
14.5
2
100
0
58
51
0
0
48
1.00
108737990--108738182
100
1.9
100
82
6
239
38
19
10
31
1.86
108739168--108739203
13
2.8
14
84
16
51
27
25
0
47
1.52
108739155--108739195
18
2.2
19
87
12
59
29
24
0
46
1.53
108739318--108739452
39
3.4
38
73
8
101
28
28
20
23
1.99
108739691--108739729
18
2.1
19
90
4
62
48
10
0
41
1.37
108741045--108741097
5
10.0
5
80
11
61
56
1
0
41
1.10
108741044--108741099
17
3.4
17
80
12
71
55
1
0
42
1.10
108741933--108741961
9
3.2
9
100
0
58
24
13
0
62
1.32
108743032--108743095
21
2.9
22
79
6
76
40
25
18
15
1.90
108743032--108743097
23
3.0
23
80
6
91
40
24
19
15
1.90
108743468--108743525
15
3.8
15
88
2
89
51
12
0
36
1.39
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108744794--108744835
5
8.2
5
91
2
66
54
0
2
42
1.13
108744858--108744886
8
3.6
8
100
0
58
62
0
0
37
0.96
108746098--108746130
16
2.1
16
94
0
57
54
18
6
21
1.64
108746376--108746467
33
2.8
33
73
14
91
32
22
9
34
1.87
108750552--108750618
28
2.4
27
71
24
66
55
2
8
32
1.46
108751092--108751138
20
2.3
21
78
14
53
61
8
0
29
1.25
108751333--108751377
18
2.5
19
85
10
67
37
0
0
62
0.96
108751333--108751377
9
4.9
10
74
20
53
37
0
0
62
0.96
108758536--108758567
15
2.1
15
100
0
64
40
25
12
21
1.88
108762765--108762802
18
2.2
18
85
4
51
71
2
0
26
1.00
108762916--108762950
7
4.9
7
96
3
61
40
42
0
17
1.49
108763740--108763774
3
11.7
3
100
0
70
68
0
0
31
0.90
108773153--108773329
87
2.0
87
98
0
345
35
15
9
40
1.79
108776343--108776388
22
2.1
22
100
0
92
41
21
19
17
1.90
108780912--108780944
16
2.1
16
100
0
66
60
12
27
0
1.32
108788272--108788305
18
1.9
17
94
5
59
44
0
0
55
0.99
108791310--108791338
2
14.5
2
100
0
58
0
51
0
48
1.00
108795176--108795269
46
2.0
46
97
0
179
40
21
7
30
1.81
108796659--108796706
21
2.3
21
85
0
60
35
25
14
25
1.94
108798812--108798845
17
2.0
17
100
0
68
23
11
17
47
1.81
108801418--108801450
11
2.9
12
86
13
52
66
0
0
33
0.92
108809753--108809805
6
8.8
6
100
0
106
32
0
0
67
0.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108818013--108818053
22
1.9
21
90
5
64
19
4
2
73
1.13
108820403--108820530
64
2.0
64
100
0
256
17
29
10
42
1.83
108821218--108821242
11
2.3
11
100
0
50
24
0
8
68
1.16
108822068--108822099
2
16.0
2
100
0
64
50
0
0
50
1.00
108822532--108822696
82
2.0
82
98
0
321
33
9
18
37
1.84
108823609--108823676
32
2.1
32
81
10
77
23
4
16
55
1.58
108824663--108824751
22
4.0
22
75
15
92
28
5
21
44
1.74
108824666--108824814
68
2.2
68
90
2
219
28
6
20
44
1.77
108830016--108830068
14
3.7
14
85
5
79
39
16
3
39
1.67
108830016--108830082
14
4.7
15
81
7
68
40
16
4
38
1.69

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378