Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr01 113035596 
Parameters: 2 7 7 80 10 50 1000
Length:  113035596

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   

This is table  378  of  378  ( 45343 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
112783700--112783730
6
5.2
6
92
0
53
12
35
0
51
1.40
112785384--112785442
24
2.5
24
91
0
91
25
8
8
57
1.56
112790931--112791059
67
1.9
67
91
0
213
49
13
9
27
1.72
112795272--112795307
6
6.0
6
86
0
54
16
19
2
61
1.47
112795606--112795645
16
2.5
16
100
0
80
12
30
30
27
1.93
112796234--112796295
23
2.7
23
82
7
65
32
0
0
67
0.91
112796258--112796305
23
2.0
24
84
4
62
27
0
2
70
0.98
112797051--112797082
7
4.6
7
100
0
64
12
0
0
87
0.54
112798576--112798605
8
3.9
8
95
4
53
86
0
0
13
0.57
112801039--112801197
31
5.1
31
87
5
214
26
17
28
27
1.98
112801225--112801345
47
2.6
46
85
1
152
28
15
24
30
1.96
112801318--112801431
42
2.7
43
83
4
142
31
14
24
28
1.95
112816654--112816682
13
2.1
14
93
6
51
51
13
13
20
1.75
112816823--112816884
11
5.6
11
73
5
54
24
9
4
61
1.47
112819936--112819996
4
15.0
4
89
3
95
50
24
0
24
1.49
112823195--112823256
29
2.2
28
88
8
90
51
1
3
43
1.27
112827385--112827455
31
2.3
31
80
0
79
39
16
15
28
1.89
112827576--112827654
38
2.1
38
97
0
149
48
8
15
27
1.74
112831199--112831253
27
2.0
27
100
0
110
32
21
7
38
1.81
112836817--112836996
46
4.0
46
90
1
256
21
23
15
40
1.91
112839125--112839172
11
4.2
11
79
10
51
62
2
0
35
1.07
112839646--112839714
33
2.1
33
94
0
120
37
4
2
55
1.35
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
112844985--112845156
93
1.8
93
96
0
317
27
30
22
20
1.98
112844977--112845152
46
3.8
46
81
10
232
28
29
21
20
1.98
112847459--112847538
30
2.7
30
82
7
99
56
15
17
11
1.67
112847459--112847529
15
4.7
15
81
6
90
57
12
18
11
1.64
112847461--112847538
15
5.2
15
78
9
79
56
15
16
11
1.67
112850490--112850661
93
1.8
93
96
0
317
27
30
22
20
1.98
112850482--112850657
46
3.8
46
81
10
232
28
29
21
20
1.98
112868992--112869029
2
19.0
2
100
0
76
50
0
0
50
1.00
112869132--112869215
30
2.8
30
78
8
91
52
7
4
35
1.50
112869526--112869564
19
2.1
19
85
9
53
30
0
7
61
1.24
112873717--112873757
12
3.2
12
86
6
55
4
17
0
78
0.93
112879725--112879755
15
2.1
15
100
0
62
32
0
48
19
1.49
112881085--112881182
49
2.0
49
89
0
151
23
24
29
22
1.99
112881847--112881928
42
2.0
42
82
4
103
37
23
1
37
1.63
112882499--112882531
14
2.4
14
100
0
66
48
15
6
30
1.69
112882802--112882877
22
3.4
22
73
12
66
46
2
1
50
1.24
112883124--112883149
2
13.0
2
100
0
52
50
0
0
50
1.00
112884580--112884606
3
9.0
3
100
0
54
66
0
0
33
0.92
112884663--112884720
29
2.1
27
81
18
66
50
12
3
34
1.57
112884803--112884861
29
2.1
27
82
17
68
50
11
3
33
1.56
112885135--112885270
3
44.7
3
86
8
177
64
1
2
31
1.14
112884319--112885161
140
6.1
140
91
4
1248
59
5
4
30
1.41
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
112884299--112885170
415
2.1
421
88
4
1302
59
5
4
30
1.41
112886830--112887362
76
6.9
77
84
3
619
33
18
16
30
1.94
112886830--112887362
153
3.5
153
82
3
651
33
18
16
30
1.94
112898356--112898391
13
2.5
15
86
13
58
66
13
0
19
1.24
112904768--112904811
21
2.1
21
95
0
79
36
13
0
50
1.42
112904938--112905002
18
3.8
17
71
28
57
36
20
3
40
1.68
112905161--112905314
76
2.0
78
87
3
222
41
27
6
24
1.79
112905375--112905508
42
3.2
42
87
2
180
13
30
11
44
1.80
112905840--112905892
24
2.2
24
100
0
106
13
18
16
50
1.77
112910205--112910235
2
15.5
2
100
0
62
48
0
0
51
1.00
112918726--112918800
38
1.9
39
91
2
125
34
12
10
42
1.77
112922841--112922871
14
2.2
14
94
0
53
61
0
16
22
1.34
112928063--112928151
46
1.9
46
90
0
142
58
6
28
6
1.49
112933698--112933724
2
13.5
2
100
0
54
51
0
0
48
1.00
112933722--112936247
626
4.0
627
94
1
4339
33
16
19
30
1.94
112944337--112944391
21
2.6
21
94
0
92
12
20
14
52
1.73
112948134--112948294
81
2.0
81
100
0
322
31
13
6
49
1.67
112950223--112950357
24
5.8
24
77
19
160
28
31
10
29
1.90
112950254--112950281
4
7.0
4
100
0
56
25
50
0
25
1.50
112950230--112950413
32
5.9
32
77
14
204
27
32
10
29
1.90
112950266--112950413
28
5.1
28
81
18
196
27
31
10
29
1.91
112954940--112954997
17
3.4
17
80
17
66
60
0
5
34
1.19
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
112955260--112955340
38
2.1
39
97
2
155
30
17
11
40
1.84
112960610--112960656
11
4.4
11
86
5
69
19
44
6
29
1.75
112960610--112960656
21
2.2
22
84
3
69
19
44
6
29
1.75
112961192--112961266
18
4.2
18
82
0
87
30
17
14
37
1.90
112961188--112961262
36
2.1
36
89
0
114
29
18
14
37
1.91
112965297--112965351
11
5.1
11
86
4
76
21
45
1
30
1.62
112970006--112970077
35
2.1
35
92
5
119
37
12
23
26
1.90
112975233--112975304
35
2.1
35
92
5
119
37
12
23
26
1.90
112975822--112975854
17
1.9
17
88
11
50
42
0
0
57
0.98
112980048--112980102
12
4.3
12
79
18
58
47
5
16
30
1.69
112980049--112980102
28
1.9
28
88
0
81
48
5
14
31
1.67
112980394--112980436
22
2.0
22
86
4
61
34
4
0
60
1.17
112980772--112980815
2
21.5
2
95
4
79
50
2
0
47
1.13
112985356--112985393
19
2.0
19
85
10
51
21
31
13
34
1.91
112985877--112985986
26
4.2
26
94
2
184
30
7
25
37
1.83
112987720--112987766
21
2.2
21
85
11
60
12
4
51
31
1.59
112989079--112989194
56
2.1
57
98
1
225
32
18
17
31
1.94
112993289--112993336
24
2.0
24
100
0
96
33
16
12
37
1.86
112993414--112993446
2
16.5
2
100
0
66
48
0
0
51
1.00
112993920--112994247
129
2.6
128
88
2
462
35
20
16
27
1.94
112996164--112996247
26
3.2
26
90
6
134
33
5
25
35
1.80
112999505--112999557
26
2.0
27
85
7
74
24
15
22
37
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
113001044--113001153
26
4.2
26
89
4
159
38
21
4
35
1.74
113001044--113001153
52
2.1
52
91
0
175
38
21
4
35
1.74
113001857--113001907
25
2.1
23
82
7
57
13
0
11
74
1.07
113001940--113001972
2
16.5
2
100
0
66
51
0
0
48
1.00
113004990--113005082
18
5.2
18
88
0
123
31
20
15
33
1.93
113009717--113009747
15
2.1
15
100
0
62
38
0
45
16
1.47
113012450--113012500
24
2.1
24
85
7
68
39
5
5
49
1.51
113014361--113014428
28
2.4
28
90
0
100
25
16
29
29
1.96
113015325--113015366
2
21.0
2
100
0
84
50
0
0
50
1.00
113016757--113016815
29
2.0
29
93
0
100
22
11
33
32
1.90
113016900--113016951
24
2.2
24
89
0
77
36
5
7
50
1.55
113016917--113016963
24
2.0
24
87
8
69
38
6
10
44
1.65
113017512--113017839
110
3.0
109
91
5
536
40
18
17
23
1.91
113032242--113032286
11
3.8
12
82
11
58
57
4
0
37
1.19
113032982--113033016
10
3.5
10
84
0
52
82
2
14
0
0.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378

The End!