genome.fa.s1.2.7.7.80.10.50.1000.184.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr01 113035596 
Parameters: 2 7 7 80 10 50 1000
Length:  113035596

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   

This is table  184  of  378  ( 45343 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53809856--53809941	45	1.9	45	92	0	145	20	24	19	34	1.96
53810222--53810279	29	2.0	29	100	0	116	27	27	10	34	1.89
53818065--53818178	41	2.8	41	80	5	106	22	21	28	26	1.99
53819036--53819069	15	2.3	15	89	0	50	23	2	8	64	1.36
53826519--53826557	19	2.1	19	100	0	78	23	15	10	51	1.73
53830063--53830272	40	5.2	40	87	2	305	25	24	28	21	1.99
53838198--53838407	40	5.2	40	87	2	305	25	24	28	21	1.99
53840517--53840770	55	4.8	52	79	9	232	36	17	24	21	1.94
53840960--53840990	16	1.9	16	93	0	53	41	0	22	35	1.54
53848055--53848309	55	4.8	54	79	10	260	36	17	25	21	1.94
53848065--53848262	108	1.8	110	90	4	321	34	17	25	22	1.96
53848501--53848531	16	1.9	16	93	0	53	41	0	22	35	1.54
53854544--53854642	40	2.5	40	98	0	189	22	23	29	25	1.99
53854544--53854682	40	3.5	40	89	2	163	22	22	28	26	1.99
53856656--53856756	37	2.8	37	93	3	170	24	31	18	24	1.98
53856897--53857391	48	10.3	48	95	0	846	31	27	5	35	1.81
53860753--53861030	40	7.0	40	94	0	459	26	29	22	20	1.99
53860753--53861030	119	2.3	120	91	1	459	26	29	22	20	1.99
53862304--53862406	37	2.8	37	90	0	161	26	31	18	24	1.98
53862547--53862943	48	8.3	48	96	1	708	30	27	6	35	1.82
53862547--53862943	191	2.1	191	95	0	706	30	27	6	35	1.82
53862547--53862943	143	2.8	144	95	0	717	30	27	6	35	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53862556--53862993	143	3.1	142	79	13	474	31	26	6	34	1.82
53869479--53869516	18	2.1	18	85	9	51	28	10	39	21	1.86
53874870--53874956	24	3.6	24	75	9	86	28	16	24	31	1.96
53880245--53880293	17	2.6	19	84	12	57	18	6	18	57	1.61
53880987--53881153	43	3.9	42	76	9	160	28	14	23	32	1.94
53884300--53884449	42	3.5	42	84	3	167	29	16	25	28	1.97
53893676--53893793	43	2.8	40	80	11	130	25	17	27	29	1.98
53904185--53904330	48	3.0	48	84	0	193	28	18	25	27	1.98
53920388--53920461	24	3.0	24	90	2	121	36	5	37	20	1.76
53922082--53922174	32	2.8	32	75	6	80	24	20	26	27	1.99
53926509--53926562	22	2.5	22	100	0	108	14	7	53	24	1.66
53931305--53931487	79	2.3	81	85	7	241	25	27	22	24	2.00
53931303--53931487	40	4.7	40	84	7	243	25	28	22	23	1.99
53938072--53938123	27	2.0	26	84	3	68	17	26	21	34	1.95
53938156--53938195	2	20.0	2	100	0	80	50	0	0	50	1.00
53948614--53948647	2	17.0	2	100	0	68	50	0	0	50	1.00
53954805--53954938	48	2.8	48	83	2	153	29	17	25	26	1.98
53960538--53960568	2	15.5	2	100	0	62	51	0	0	48	1.00
53962428--53962488	30	2.0	30	83	0	77	31	22	8	37	1.84
53965779--53966002	47	4.8	47	75	4	168	29	19	28	23	1.98
53965781--53965954	94	1.9	94	84	4	235	28	19	28	23	1.98
53975357--53975482	46	2.7	46	96	0	225	20	22	27	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53975766--53975848	41	2.0	41	100	0	166	21	4	14	59	1.54
53979139--53979351	75	2.8	75	95	0	372	35	20	6	37	1.79
53979872--53979927	17	3.2	17	80	7	51	41	17	14	26	1.88
53979902--53979956	17	3.2	16	80	10	65	43	16	5	34	1.71
53980615--53980675	18	3.4	18	76	0	68	42	19	8	29	1.80
53982715--53982767	19	2.7	19	82	2	70	47	9	1	41	1.47
53982783--53983002	119	1.8	120	87	2	327	44	10	2	42	1.53
53983168--53983212	7	6.3	7	87	12	65	86	0	13	0	0.57
53983168--53983212	15	3.1	14	87	12	65	86	0	13	0	0.57
53983168--53983212	22	2.0	22	91	8	74	86	0	13	0	0.57
53983353--53983390	3	12.7	3	100	0	76	65	0	0	34	0.93
53988336--53988479	39	3.7	39	88	0	216	27	20	28	23	1.99
53988337--53988507	78	2.2	79	88	1	245	26	21	28	24	1.99
53993559--53993624	20	3.3	20	89	2	107	33	13	19	33	1.91
53993672--53993815	25	6.0	24	80	8	143	29	18	20	31	1.96
53994009--53994067	30	1.9	31	86	3	84	38	13	20	27	1.90
54005710--54005841	29	4.6	29	90	0	174	30	14	30	25	1.95
54015015--54015057	20	2.1	21	83	12	54	27	25	9	37	1.87
54015226--54015384	43	3.7	43	78	13	150	32	24	18	25	1.97
54022243--54022461	40	5.5	40	93	2	354	26	27	23	22	2.00
54024068--54024236	40	4.2	40	80	4	173	23	26	21	28	1.99
54033348--54033518	92	1.9	92	93	2	299	28	29	21	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54037064--54037134	35	2.0	35	100	0	142	25	8	33	32	1.86
54038044--54038074	2	15.5	2	100	0	62	48	0	0	51	1.00
54043234--54043308	34	2.2	34	83	4	89	25	22	22	29	1.99
54045815--54045889	6	12.3	6	77	13	64	49	12	17	21	1.78
54046597--54046655	27	2.2	27	81	6	66	38	20	20	20	1.93
54046635--54046778	27	5.3	27	81	3	155	25	18	18	37	1.93
54046636--54046769	54	2.5	54	86	4	198	24	19	19	36	1.95
54054786--54054822	3	12.7	3	83	16	51	29	0	0	70	0.88
54055096--54055165	28	2.5	28	86	4	97	28	27	15	28	1.96
54058191--54058610	49	8.8	49	90	3	619	29	29	9	32	1.88
54058337--54058414	22	3.3	22	66	27	61	25	32	11	30	1.91
54058350--54058425	22	3.0	27	62	31	67	27	32	9	30	1.88
54058482--54058556	22	3.3	22	66	20	64	26	30	12	30	1.92
54061203--54061242	21	2.0	21	85	5	55	25	5	22	47	1.71
54064031--54064197	41	4.1	41	77	14	168	22	22	27	27	1.99
54072504--54072585	29	2.8	29	96	0	146	29	14	31	24	1.95
54075566--54075607	15	2.8	15	79	13	50	19	11	11	57	1.65
54092169--54092263	25	3.8	25	88	0	127	26	21	23	29	1.99
54092156--54092263	50	2.2	50	81	5	121	25	21	21	31	1.98
54092465--54092708	27	9.0	27	85	0	326	24	20	20	34	1.96
54092701--54092772	27	2.7	27	80	4	76	34	8	15	41	1.77
54092711--54092902	27	7.2	26	74	11	138	30	7	20	42	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54092700--54092902	53	3.8	53	77	8	162	29	7	20	42	1.79
54092711--54092902	80	2.4	80	79	6	194	30	7	20	42	1.79
54092805--54092916	27	4.2	26	77	10	100	27	6	24	41	1.78
54092895--54093062	27	6.2	27	89	0	255	39	7	23	29	1.82
54092905--54093096	54	3.6	54	89	0	159	40	8	22	29	1.83
54095448--54095542	25	3.8	25	90	0	145	26	23	24	26	2.00
54095713--54095955	27	9.0	27	88	0	353	24	21	19	34	1.96
54095958--54096299	27	12.7	27	82	3	190	35	8	21	34	1.84
54096116--54096353	54	4.4	54	85	1	280	39	7	22	30	1.82
54096115--54096353	80	3.0	80	85	2	264	39	7	22	30	1.82
54096144--54096351	107	1.9	108	91	0	337	40	8	22	28	1.83
54096144--54096353	27	7.8	27	90	1	296	40	8	22	29	1.82
54096133--54096365	107	2.2	106	82	3	313	39	7	21	31	1.82
54125721--54125760	19	2.1	19	95	0	71	40	17	25	17	1.91
54129592--54129707	27	4.3	26	86	5	106	35	19	22	22	1.96
54129632--54129706	28	2.7	28	93	2	125	33	20	24	22	1.97
54129584--54129707	54	2.3	53	81	2	140	34	20	22	22	1.97
54135143--54135317	46	3.8	45	73	13	167	21	19	28	30	1.98
54135140--54135309	93	1.8	93	89	0	268	21	20	28	29	1.98
54148196--54148402	53	3.8	53	80	10	233	33	16	25	24	1.96
54148203--54148401	108	1.8	108	84	5	276	33	17	25	24	1.96
54151374--54151596	40	5.6	40	87	5	267	22	24	28	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54151374--54151596	119	1.9	119	83	3	297	22	24	28	24	2.00
54151414--54151596	79	2.3	80	88	1	262	22	24	27	24	2.00
54151374--54151628	119	2.2	119	81	5	286	23	24	28	23	2.00
54151414--54151628	79	2.7	80	84	5	251	23	24	27	23	2.00
54156357--54156566	40	5.2	40	88	2	305	21	28	24	25	1.99
54168783--54168992	40	5.2	40	88	2	305	21	28	24	25	1.99
54175223--54175357	39	3.4	39	82	5	148	25	23	28	22	1.99
54179068--54179127	27	2.3	26	85	2	75	35	20	21	23	1.96
54185317--54185413	48	2.0	48	93	0	167	23	13	27	35	1.92
54187146--54187184	16	2.4	16	82	4	51	48	33	7	10	1.66

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378