genome.fa.s13.2.7.7.80.10.50.1000.104.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13 124041150 
Parameters: 2 7 7 80 10 50 1000
Length:  124041150

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   

This is table  104  of  410  ( 49152 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30678080--30678266	43	4.3	43	84	5	236	27	13	24	34	1.93
30681003--30681081	29	2.7	29	86	5	106	27	32	15	24	1.95
30687154--30687191	19	2.1	18	85	9	51	13	18	2	65	1.37
30717481--30717663	40	4.6	40	81	8	205	24	21	27	26	2.00
30717483--30717663	79	2.3	81	83	7	228	24	21	27	26	1.99
30717513--30717696	79	2.3	78	78	12	196	26	22	25	25	2.00
30726734--30726786	26	2.0	26	100	0	106	47	22	11	18	1.81
30729960--30730107	43	3.4	43	72	19	130	27	18	25	28	1.98
30733524--30733589	29	2.3	28	84	5	78	30	24	1	43	1.63
30734544--30734629	19	4.5	19	97	0	154	16	40	20	22	1.91
30736241--30736464	48	4.7	48	85	2	297	27	29	16	26	1.97
30736237--30736463	96	2.4	95	89	4	341	27	29	16	26	1.97
30740800--30740919	45	2.6	44	77	16	127	24	23	17	35	1.96
30740771--30740904	22	5.7	23	74	15	107	24	21	20	33	1.97
30741763--30741989	111	2.1	109	88	6	341	26	29	15	28	1.96
30749220--30749278	22	2.6	23	72	2	57	20	28	30	20	1.97
30752739--30752766	2	14.0	2	100	0	56	50	0	0	50	1.00
30752983--30753112	66	1.9	69	81	7	158	35	16	28	19	1.94
30759001--30759036	15	2.4	15	100	0	72	36	11	25	27	1.90
30759009--30759042	15	2.3	15	89	0	50	32	23	17	26	1.97
30769965--30770088	59	2.1	59	98	0	239	36	20	8	34	1.84
30770238--30770336	50	2.0	51	86	6	139	30	26	17	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30772863--30773183	48	6.7	47	80	7	362	25	29	18	26	1.98
30772863--30773198	96	3.5	96	90	0	521	26	30	17	26	1.97
30775172--30775301	43	3.0	43	75	4	136	30	26	17	25	1.97
30783826--30784004	40	4.5	38	77	8	137	23	26	24	25	2.00
30783826--30784004	80	2.2	81	83	3	218	23	26	24	25	2.00
30783854--30784005	40	3.8	39	82	4	160	24	26	23	25	2.00
30786082--30786244	71	2.3	71	97	1	310	19	27	17	35	1.94
30786082--30786278	71	2.8	70	90	4	240	20	27	17	34	1.95
30792125--30792152	13	2.2	13	100	0	56	0	7	0	92	0.37
30792118--30792152	16	2.2	16	89	0	52	0	11	0	88	0.51
30792118--30792152	15	2.3	15	90	5	52	0	11	0	88	0.51
30798236--30798260	4	6.2	4	100	0	50	24	0	0	76	0.80
30802111--30802159	25	2.0	25	95	0	89	28	10	24	36	1.88
30806086--30806295	40	5.2	40	87	2	305	25	24	28	21	1.99
30814223--30814432	40	5.2	40	87	2	305	25	24	28	21	1.99
30819353--30819461	58	1.9	58	88	5	168	33	22	14	28	1.94
30830625--30830663	20	2.0	20	85	10	53	53	0	28	17	1.44
30835767--30835806	20	2.0	20	95	0	71	27	5	32	35	1.79
30837185--30837209	13	1.9	13	100	0	50	20	40	24	16	1.91
30845262--30845310	22	2.2	22	77	0	53	20	6	8	65	1.41
30845339--30845401	30	2.1	30	90	0	99	25	0	14	60	1.34
30847958--30848072	44	2.6	44	85	2	149	35	13	22	27	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30847958--30848091	46	3.0	45	82	4	153	35	14	23	26	1.93
30854100--30854214	44	2.6	44	85	2	149	35	13	22	27	1.92
30854100--30854233	46	3.0	45	82	4	153	35	14	23	26	1.93
30855470--30855728	46	5.5	47	77	12	189	23	28	18	28	1.98
30858223--30858419	79	2.5	80	86	8	294	28	21	25	24	1.99
30858223--30858419	40	4.9	40	90	6	278	28	21	25	24	1.99
30858355--30858466	40	2.8	40	85	5	111	25	21	27	25	1.99
30858236--30858454	119	1.8	119	81	9	277	28	20	26	24	1.99
30861358--30861389	2	16.0	2	100	0	64	50	0	0	50	1.00
30861628--30861685	30	1.9	30	85	0	80	56	12	5	25	1.56
30864320--30864376	29	2.0	28	86	10	80	52	0	3	43	1.18
30865337--30865397	19	3.3	17	72	17	50	62	1	3	32	1.21
30867886--30867915	16	1.9	15	93	6	51	40	0	0	60	0.97
30874401--30874444	3	15.0	3	95	4	81	34	0	0	65	0.93
30875829--30875880	18	3.0	17	75	5	59	42	0	26	30	1.56
30878797--30878844	6	8.0	6	80	0	51	39	8	2	50	1.44
30878802--30878844	8	5.4	8	91	0	59	39	9	0	51	1.34
30878797--30878844	4	12.0	4	86	0	51	39	8	2	50	1.44
30892902--30892944	22	1.9	23	90	4	70	20	2	53	23	1.57
30894316--30894384	28	2.5	28	95	2	122	18	10	27	43	1.82
30895022--30895172	54	2.8	54	92	0	248	31	7	21	40	1.80
30895019--30895179	81	2.0	81	87	0	232	32	8	20	39	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30895019--30895172	27	5.7	27	83	0	209	31	7	20	39	1.81
30895030--30895199	81	2.1	81	78	2	189	33	7	20	38	1.81
30895167--30895307	27	5.2	27	83	6	169	41	8	21	28	1.83
30895167--30895321	81	1.9	81	84	2	204	40	9	23	27	1.84
30895167--30895307	54	2.6	53	87	4	201	41	8	21	28	1.83
30897087--30897119	12	2.6	13	90	9	59	48	0	15	36	1.45
30897084--30897142	26	2.3	25	82	2	73	52	1	18	27	1.55
30898822--30898847	11	2.4	11	100	0	52	38	19	0	42	1.51
30911759--30911848	25	3.6	25	83	3	83	21	25	18	34	1.96
30913604--30913705	50	2.0	50	94	0	177	19	7	17	54	1.67
30914623--30914674	24	2.2	24	92	0	86	19	15	19	46	1.85
30914718--30914773	24	2.4	24	87	3	78	17	28	23	30	1.97
30916911--30916968	27	2.1	27	87	0	80	29	20	6	43	1.78
30916919--30917001	27	3.1	26	83	11	89	26	15	10	46	1.79
30916927--30917013	26	3.3	26	85	10	115	26	16	12	44	1.83
30916967--30917160	27	7.2	26	76	9	104	37	20	11	31	1.88
30917000--30917129	54	2.4	52	80	11	129	39	20	11	29	1.87
30917000--30917155	81	1.9	81	84	5	208	41	19	10	28	1.84
30917033--30917156	27	4.6	27	83	6	144	42	22	7	27	1.80
30917033--30917213	54	3.3	55	80	6	163	41	20	7	29	1.80
30917134--30917219	27	3.1	27	76	17	95	39	16	9	34	1.80
30918147--30918216	25	2.8	25	88	0	104	28	24	22	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30918435--30918517	31	2.7	31	87	3	125	31	15	24	28	1.96
30923661--30923963	56	5.4	56	89	0	444	34	24	12	29	1.91
30923661--30924084	112	3.9	111	82	10	543	34	24	12	28	1.92
30923913--30924006	43	2.2	43	100	0	188	30	26	14	27	1.95
30923857--30924062	99	2.1	99	92	1	342	33	25	13	27	1.93
30923801--30924084	155	1.8	155	92	1	480	34	24	12	28	1.92
30923956--30924084	56	2.3	56	90	2	206	34	25	12	27	1.92
30925955--30926175	40	5.7	40	87	8	296	24	21	27	26	1.99
30925955--30926208	80	3.3	79	81	11	242	25	21	27	25	2.00
30934123--30934306	40	4.7	39	84	10	232	23	22	27	26	2.00
30934123--30934306	79	2.3	80	85	8	243	23	22	27	26	2.00
30934124--30934339	79	2.7	78	79	14	239	25	22	27	25	2.00
30939552--30939872	28	11.3	29	82	6	356	27	14	33	25	1.95
30939564--30939867	57	5.3	58	81	8	349	25	15	34	24	1.95
30939564--30939896	142	2.3	141	82	7	397	25	15	34	24	1.94
30948638--30948822	99	1.9	99	85	4	257	25	18	28	28	1.98
30948642--30948833	49	3.9	49	80	6	201	25	19	27	27	1.99
30950302--30950344	8	5.4	8	82	0	59	48	20	23	6	1.73
30950302--30950344	16	2.7	16	92	0	77	48	20	23	6	1.73
30950555--30950679	29	4.4	29	80	4	155	25	12	33	28	1.92
30952579--30952653	23	3.0	25	84	5	73	29	17	25	28	1.97
30952597--30952664	23	2.9	23	84	6	84	29	17	26	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30952656--30952722	24	2.8	24	76	10	75	40	14	17	26	1.89
30962847--30962933	44	2.0	44	97	0	165	39	11	17	32	1.85
30965928--30965986	25	2.4	25	85	0	82	20	33	16	28	1.95
30965930--30965998	25	2.8	25	84	0	75	20	31	15	31	1.94
30974096--30974143	16	3.0	16	75	0	51	66	4	2	27	1.21
30981758--30981907	74	2.0	74	93	0	255	22	22	21	34	1.97
30992925--30992977	21	2.5	21	84	6	63	32	5	3	58	1.39
30994002--30994099	49	2.0	49	100	0	196	38	12	12	36	1.80
30998057--30998088	2	16.0	2	100	0	64	50	0	0	50	1.00
31004650--31004800	40	3.8	39	80	6	153	27	23	27	22	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410