Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13 124041150 
Parameters: 2 7 7 80 10 50 1000
Length:  124041150

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   

This is table  385  of  410  ( 49152 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
116878309--116878547
98
2.4
97
77
16
222
33
3
1
61
1.20
116878311--116878595
156
1.8
159
81
9
368
32
3
2
61
1.26
116878408--116878549
44
3.3
45
75
20
128
34
2
1
61
1.19
116878808--116878866
16
3.5
16
74
23
50
35
1
0
62
1.05
116878801--116878875
30
2.6
29
76
17
75
36
1
0
62
1.04
116878843--116878892
26
1.9
26
83
0
64
36
4
0
60
1.16
116882222--116882336
44
2.7
42
80
9
126
21
21
26
30
1.99
116882222--116882343
42
2.9
42
75
17
119
21
21
27
30
1.98
116882222--116882386
43
3.9
42
75
10
156
21
20
27
30
1.98
116883892--116883939
23
2.0
24
88
4
71
31
6
33
29
1.82
116887188--116887685
249
2.0
249
92
0
827
31
21
17
29
1.96
116897874--116898051
81
2.2
81
88
4
261
28
20
10
41
1.84
116897874--116898052
27
6.6
27
85
5
227
27
20
10
41
1.84
116898003--116898064
27
2.3
27
85
0
79
32
20
8
38
1.82
116899289--116899336
25
1.9
25
86
0
69
33
25
16
25
1.96
116899375--116899431
9
5.9
9
73
15
51
35
8
21
35
1.84
116899373--116899443
20
3.5
20
94
0
124
35
11
21
32
1.89
116899384--116899438
11
5.4
11
70
16
55
36
12
20
30
1.90
116899490--116899632
25
5.8
25
91
2
220
27
20
23
27
1.99
116899490--116899660
25
7.0
24
85
7
213
28
21
23
27
1.99
116900726--116900784
2
29.5
2
100
0
118
0
50
0
49
1.00
116905410--116905626
46
4.7
45
74
15
158
27
18
30
23
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
116917021--116917054
17
2.0
17
88
0
50
41
2
8
47
1.50
116932346--116932390
23
2.0
23
100
0
90
40
15
8
35
1.79
116938391--116938433
21
2.1
20
83
12
52
30
30
20
18
1.97
116943513--116943700
49
3.8
49
82
2
259
27
18
25
28
1.98
116943508--116943695
100
1.9
100
95
0
340
26
19
25
28
1.99
116944831--116945057
43
5.3
43
86
0
310
30
24
19
25
1.98
116945363--116945403
21
2.0
21
95
0
73
2
53
17
26
1.56
116946832--116946892
30
2.0
30
93
0
104
40
16
16
26
1.89
116949833--116949858
9
2.9
9
100
0
52
7
11
0
80
0.89
116950291--116950395
7
15.1
7
70
15
58
36
42
0
20
1.53
116950323--116950395
21
3.5
20
75
14
69
34
47
0
17
1.48
116950418--116950464
14
3.3
15
79
8
53
48
19
2
29
1.60
116950783--116950830
22
2.1
22
84
3
60
22
0
27
50
1.50
116950871--116951090
41
5.4
40
91
2
287
22
22
21
33
1.97
116950871--116951121
82
3.1
79
82
4
268
22
21
21
34
1.97
116951145--116951170
12
2.2
12
100
0
52
46
30
15
7
1.74
116953220--116953273
15
3.7
15
74
20
60
11
11
12
64
1.49
116953215--116953275
29
2.1
29
88
11
90
9
9
18
62
1.53
116955416--116955585
48
3.6
47
89
3
268
25
18
27
28
1.98
116955409--116955593
97
1.9
95
96
2
343
24
19
28
28
1.98
116955416--116955593
49
3.7
47
88
3
266
24
19
27
28
1.98
116969467--116969623
25
6.4
23
82
12
188
26
23
21
29
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
116969478--116969622
49
2.9
49
88
5
220
26
23
22
27
1.99
116969479--116969621
74
1.9
74
91
5
236
27
23
21
27
1.99
116969681--116969737
9
5.9
9
73
15
51
35
21
8
35
1.84
116969669--116969739
20
3.5
20
94
0
124
32
21
11
35
1.89
116969674--116969728
11
5.4
11
70
16
55
30
20
12
36
1.90
116976682--116976797
30
3.9
30
90
0
160
17
25
31
25
1.97
116980206--116980239
16
2.0
18
88
11
54
17
44
26
11
1.83
116980454--116980479
12
2.2
12
100
0
52
23
46
23
7
1.78
116983664--116983775
27
4.1
27
84
7
138
15
24
23
37
1.93
116983664--116983775
54
2.1
54
88
3
163
15
24
23
37
1.93
116988898--116988967
27
2.6
27
75
8
79
31
25
17
25
1.97
116995120--116995147
5
5.6
5
100
0
56
17
0
0
82
0.68
117001164--117001330
45
3.6
45
77
14
171
21
19
27
31
1.98
117016453--117016496
23
2.0
23
86
8
65
40
0
0
59
0.98
117016482--117016518
17
2.2
16
90
4
56
40
0
0
59
0.97
117021871--117021895
11
2.3
11
100
0
50
76
0
0
24
0.80
117032091--117032617
274
1.9
272
98
0
1018
32
18
14
35
1.90
117033560--117033622
31
2.0
31
90
0
99
36
7
9
46
1.66
117037110--117037154
6
7.3
6
90
5
63
15
11
15
57
1.64
117039737--117039780
23
1.9
23
95
0
79
52
18
13
15
1.75
117040825--117040876
3
17.3
3
100
0
104
32
0
0
67
0.91
117041140--117041182
3
14.7
3
90
4
70
30
0
0
69
0.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
117043083--117043126
19
2.3
20
84
7
56
27
20
11
40
1.86
117046909--117047053
37
3.9
37
91
0
236
23
32
20
24
1.98
117047098--117048011
48
19.0
48
91
0
1407
31
27
6
35
1.81
117050510--117050820
40
7.8
40
94
1
509
25
27
20
26
1.99
117052053--117052234
37
4.9
37
91
0
274
25
32
17
24
1.96
117052279--117053131
48
17.8
48
92
0
1375
30
27
6
35
1.82
117054600--117054645
6
7.8
6
76
13
51
80
0
2
17
0.81
117054610--117054652
19
2.2
19
87
4
59
81
2
0
16
0.79
117055204--117055237
17
2.1
16
94
5
59
73
0
26
0
0.83
117056085--117056714
44
14.2
44
74
8
427
31
17
20
30
1.96
117056159--117056689
89
5.9
88
74
6
361
30
17
21
30
1.96
117056193--117056634
178
2.5
177
81
3
467
30
17
21
30
1.96
117056155--117056765
133
4.5
137
76
7
391
31
17
21
29
1.96
117057194--117057237
23
1.9
23
95
0
79
52
18
13
15
1.75
117058273--117058317
3
15.3
3
81
4
56
31
2
2
64
1.18
117058257--117058317
27
2.4
25
82
17
74
27
3
4
63
1.30
117058273--117058339
15
4.4
16
72
16
54
29
4
1
64
1.22
117058343--117058367
2
12.5
2
100
0
50
48
0
0
52
1.00
117058580--117058658
3
26.3
3
100
0
158
32
0
0
67
0.91
117061994--117062044
20
2.4
21
78
15
61
33
5
3
56
1.42
117064250--117064297
19
2.6
18
80
9
60
22
20
10
45
1.81
117066893--117066926
12
2.8
12
86
4
50
82
0
17
0
0.67
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
117067959--117068083
64
2.0
64
86
0
178
32
17
12
36
1.88
117068150--117068982
132
6.3
132
88
1
1064
28
20
23
27
1.99
117068544--117069012
45
10.6
45
65
11
173
28
19
22
28
1.98
117074024--117074064
8
5.4
8
77
11
50
17
9
0
73
1.09
117077574--117077599
2
13.0
2
100
0
52
50
0
0
50
1.00
117078095--117078119
5
5.0
5
100
0
50
80
0
0
20
0.72
117078972--117079197
101
2.2
101
85
4
303
33
15
23
26
1.95
117079007--117079164
33
4.7
33
69
12
90
33
16
23
26
1.96
117079107--117079183
33
2.3
33
80
10
86
35
16
23
24
1.95
117083209--117083245
19
1.9
19
88
0
56
29
5
8
56
1.51
117085467--117085495
13
2.2
13
100
0
58
65
6
6
20
1.40
117095864--117095905
19
2.2
19
91
0
66
33
11
16
38
1.86
117096327--117096386
31
1.9
31
83
6
77
33
18
10
38
1.84
117098206--117098258
2
26.5
2
100
0
106
50
49
0
0
1.00
117102343--117102397
25
2.2
25
93
3
94
32
25
25
16
1.96
117103077--117103168
47
2.0
46
89
2
139
32
23
16
27
1.96
117103077--117103223
53
2.9
51
82
7
151
30
23
17
27
1.97
117107640--117107842
38
4.9
39
85
12
248
35
16
25
21
1.94
117107717--117107886
46
3.7
46
86
3
218
40
15
24
20
1.91
117107721--117107909
91
2.1
91
82
5
231
41
16
22
19
1.90
117108147--117108193
25
2.0
25
83
8
62
53
4
14
27
1.60
117120949--117121047
21
4.6
21
69
13
76
36
1
0
62
1.02
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
117120986--117121019
17
1.9
17
88
5
50
32
0
0
67
0.91
117120999--117121043
23
2.0
23
82
8
56
35
2
0
62
1.08
117120958--117121047
16
5.5
17
64
21
57
34
1
0
64
1.01
117121753--117121799
15
3.1
15
78
3
58
61
0
2
36
1.08
117126370--117126477
55
2.0
55
87
7
157
48
3
8
39
1.51
117128684--117128725
21
2.0
21
86
13
61
54
9
14
21
1.68
117131805--117131852
2
24.5
2
78
4
53
50
0
8
41
1.33
117131806--117131851
6
7.8
6
95
2
67
52
0
8
39
1.33
117132967--117133000
13
2.8
12
91
8
52
0
0
8
91
0.43
117141376--117141408
17
1.9
17
93
0
57
39
12
0
48
1.40

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410