genome.fa.s13.2.7.7.80.10.50.1000.155.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13 124041150 
Parameters: 2 7 7 80 10 50 1000
Length:  124041150

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   

This is table  155  of  410  ( 49152 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47191698--47191975	50	5.5	50	78	3	245	32	25	15	26	1.96
47191747--47191928	101	1.8	101	91	0	301	28	25	19	26	1.98
47195491--47195552	32	1.9	32	90	0	97	32	14	9	43	1.78
47202039--47202153	29	4.0	29	89	4	108	26	22	14	36	1.93
47202051--47202153	29	3.5	29	96	2	188	24	24	14	36	1.93
47202050--47202183	59	2.2	60	89	1	207	25	25	14	35	1.93
47209581--47209712	29	4.5	29	97	1	246	24	24	14	37	1.92
47209581--47209712	59	2.3	59	97	1	248	24	24	14	37	1.92
47214135--47214169	16	2.1	18	89	10	56	28	14	0	57	1.38
47214964--47215095	29	4.5	29	97	1	246	24	24	14	37	1.92
47214964--47215095	59	2.3	59	97	1	248	24	24	14	37	1.92
47226645--47226814	48	3.6	48	82	3	218	32	20	25	21	1.97
47226837--47226964	49	2.6	49	83	2	159	28	21	27	23	1.99
47228311--47228366	21	2.7	21	88	0	85	10	32	28	28	1.90
47235322--47235354	16	2.0	17	88	5	50	21	3	6	69	1.24
47236177--47236225	26	2.0	24	88	8	71	63	6	0	30	1.19
47236196--47236254	21	2.8	21	78	12	59	69	8	0	22	1.15
47236301--47236333	15	2.1	16	88	11	50	69	0	0	30	0.88
47236716--47236754	14	2.7	15	84	8	53	51	0	0	48	1.00
47242011--47242056	23	2.0	22	83	4	56	43	2	13	41	1.55
47252096--47252127	2	16.0	2	100	0	64	50	0	0	50	1.00
47252581--47252628	25	1.9	25	87	8	71	43	4	14	37	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47254968--47255033	33	2.0	33	100	0	132	45	9	6	39	1.61
47260834--47261012	88	2.0	88	95	0	322	27	18	15	37	1.92
47266904--47267719	48	16.8	48	89	2	1182	31	26	6	35	1.82
47267076--47267256	59	3.3	59	75	17	206	34	25	4	34	1.78
47267172--47267201	11	2.7	11	100	0	60	40	23	0	36	1.55
47271221--47271358	40	3.5	40	93	0	222	23	27	22	26	2.00
47271341--47271375	17	2.1	17	100	0	70	17	22	22	37	1.94
47271301--47271415	57	2.0	57	94	0	203	25	26	20	28	1.99
47274244--47274410	40	4.2	40	80	2	167	23	27	22	26	1.99
47274260--47274410	80	1.9	79	83	6	198	23	27	22	25	2.00
47282251--47282416	40	4.2	39	81	3	172	24	27	22	25	2.00
47282267--47282416	79	1.9	79	84	5	205	24	27	22	26	2.00
47283286--47283562	27	10.3	26	80	5	223	40	20	7	31	1.81
47283286--47283788	54	9.3	54	74	6	331	38	21	8	31	1.83
47283286--47283570	81	3.5	79	78	6	295	40	20	8	31	1.81
47283307--47283788	27	17.9	27	76	9	220	38	20	8	32	1.84
47283772--47283972	27	7.6	27	89	2	291	35	19	19	24	1.96
47283718--47283972	80	3.2	80	87	3	309	35	20	18	25	1.95
47283718--47283990	53	5.1	53	84	5	277	35	20	18	26	1.95
47284417--47284481	22	3.0	22	75	8	69	23	23	20	33	1.97
47284640--47284741	27	3.8	27	83	5	107	16	23	22	37	1.94
47284900--47284996	6	15.8	6	74	16	83	19	18	15	46	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47284890--47284987	31	3.2	31	94	0	160	19	19	14	46	1.83
47289321--47289381	21	3.0	21	86	11	90	14	37	26	21	1.92
47292445--47292567	49	2.5	49	95	0	219	26	10	33	29	1.90
47292670--47292747	37	2.1	37	100	0	156	28	19	32	20	1.97
47294759--47295066	29	10.7	29	93	2	487	25	17	32	24	1.97
47295550--47295648	41	2.4	41	80	11	114	26	25	24	24	2.00
47298748--47298870	49	2.5	49	95	0	219	26	10	33	29	1.90
47298973--47299050	37	2.1	37	100	0	156	28	19	32	20	1.97
47309139--47309361	40	5.6	40	78	15	205	24	21	28	26	1.99
47309139--47309359	79	2.7	81	78	15	228	24	21	28	25	1.99
47309201--47309332	46	3.0	46	88	7	179	23	19	29	27	1.98
47315212--47315263	10	5.0	10	76	17	52	36	30	9	23	1.87
47315207--47315268	32	1.9	32	93	0	106	38	29	9	22	1.86
47322751--47322775	13	1.9	13	100	0	50	4	48	24	24	1.68
47325136--47325390	40	6.5	40	86	5	317	24	27	23	24	2.00
47325136--47325390	39	6.5	40	87	7	303	24	27	23	24	2.00
47327406--47327496	43	2.1	43	81	2	103	29	26	16	27	1.97
47331338--47331376	19	2.1	19	85	9	53	23	5	5	66	1.32
47331389--47331420	15	2.1	15	94	5	55	31	0	0	68	0.90
47331389--47331442	18	3.1	17	75	25	51	25	3	0	70	1.04
47331547--47331576	4	7.2	4	92	7	51	23	3	0	73	0.98
47334221--47334284	24	2.6	25	87	4	87	32	31	15	20	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47334313--47334497	94	2.0	94	97	0	352	38	20	10	30	1.86
47338018--47338057	19	2.0	20	85	4	55	22	25	10	42	1.84
47340302--47340340	19	2.1	19	85	9	53	23	5	5	66	1.32
47340357--47340393	3	12.7	3	83	16	51	35	0	0	64	0.94
47340569--47340603	18	2.0	17	88	5	52	25	8	8	57	1.57
47351110--47351281	93	1.8	93	96	0	317	27	30	22	20	1.98
47351102--47351277	46	3.8	46	81	10	232	28	29	21	20	1.98
47353660--47353747	29	3.0	29	80	8	97	56	15	17	10	1.66
47353660--47353738	15	5.4	15	77	10	83	58	13	17	10	1.63
47353671--47353747	15	5.2	15	75	9	77	55	15	16	11	1.68
47356695--47356866	93	1.8	93	96	0	317	27	30	22	20	1.98
47356687--47356862	46	3.8	46	81	10	232	28	29	21	20	1.98
47363721--47363888	40	4.2	40	80	4	169	23	27	23	25	2.00
47369456--47369550	27	3.6	27	86	1	111	27	16	17	37	1.92
47369475--47369963	27	18.3	27	82	4	503	30	10	20	38	1.86
47371188--47371260	25	2.8	26	89	4	112	23	21	24	30	1.99
47379202--47379409	40	5.2	39	81	3	193	24	25	24	25	2.00
47379202--47379408	80	2.6	80	81	3	229	24	26	24	25	2.00
47387209--47387416	40	5.2	39	81	3	193	24	25	24	25	2.00
47387209--47387415	80	2.6	80	81	3	229	24	26	24	25	2.00
47390502--47390574	25	2.9	26	87	6	114	24	21	24	28	1.99
47390640--47390686	10	4.7	10	94	5	78	31	19	10	38	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47390620--47390686	21	3.3	21	87	4	84	31	19	10	38	1.85
47394159--47394267	43	2.6	43	79	4	114	31	17	23	27	1.97
47398279--47398402	47	2.6	47	79	0	122	32	31	13	22	1.93
47409827--47409872	16	2.8	17	83	6	58	73	4	4	17	1.15
47409844--47409879	10	3.5	10	85	7	54	77	2	2	16	1.00
47410478--47410890	151	2.7	150	81	14	483	44	10	4	41	1.57
47411742--47411771	15	2.0	15	100	0	60	46	13	26	13	1.80
47411757--47412007	42	6.0	42	91	0	376	35	21	19	23	1.96
47412421--47412458	11	3.5	11	82	13	51	2	21	0	76	0.91
47413004--47413068	32	2.0	31	85	8	85	7	15	0	76	0.99
47417392--47417448	28	2.0	28	89	0	87	43	8	28	19	1.80
47417394--47417456	28	2.2	28	85	0	81	44	9	26	19	1.81
47420946--47420993	18	2.7	18	77	6	53	18	31	4	45	1.68
47422814--47422852	21	1.9	20	89	5	60	43	7	15	33	1.75
47430300--47430384	27	3.4	27	62	26	69	21	20	30	28	1.98
47430286--47430404	47	2.5	47	93	0	202	21	17	30	31	1.96
47436764--47436931	40	4.2	40	79	1	158	22	27	23	26	2.00
47436780--47436929	80	1.9	80	84	5	205	21	27	24	26	1.99
47440297--47440336	20	2.0	20	100	0	80	25	20	20	35	1.96
47440300--47440345	20	2.3	20	92	0	74	30	23	17	28	1.97
47441197--47441233	14	2.6	15	83	12	51	37	5	0	56	1.22
47441199--47441261	21	3.1	21	77	8	60	39	4	0	55	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47447887--47447924	14	2.7	14	88	8	51	34	5	0	60	1.19
47447888--47447944	24	2.3	24	82	14	64	36	3	0	59	1.14
47451663--47451878	52	4.1	52	71	10	152	46	7	5	40	1.55
47451622--47451839	108	2.0	109	90	0	348	42	6	7	43	1.59
47451845--47451907	24	2.6	25	92	2	110	52	14	0	33	1.42
47453129--47453237	54	2.0	54	100	0	218	37	20	12	29	1.90
47456501--47456772	134	2.0	134	94	0	481	26	18	17	38	1.92
47460980--47461483	27	18.7	26	76	7	224	38	21	8	31	1.83
47460980--47461482	54	9.3	54	74	6	329	38	21	8	31	1.83
47460980--47461264	81	3.5	79	78	6	295	40	20	8	31	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410