genome.fa.s13.2.7.7.80.10.50.1000.157.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13 124041150 
Parameters: 2 7 7 80 10 50 1000
Length:  124041150

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   

This is table  157  of  410  ( 49152 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47760468--47760548	31	2.6	31	84	2	108	51	14	12	20	1.74
47760419--47760548	37	3.5	36	78	13	120	50	13	15	20	1.78
47760685--47760786	27	3.8	27	81	5	107	37	19	22	20	1.95
47768700--47768755	28	2.0	29	82	10	71	17	42	21	17	1.89
47769710--47769925	47	4.7	47	73	16	161	23	28	19	29	1.98
47775067--47775096	12	2.5	12	94	0	51	0	23	40	36	1.55
47775667--47775697	15	2.1	15	100	0	62	25	38	19	16	1.92
47783152--47783203	25	2.1	25	100	0	104	50	3	26	19	1.65
47783438--47783581	43	3.4	44	80	5	161	27	15	24	32	1.95
47783446--47783560	42	2.7	43	84	8	146	24	16	26	33	1.96
47790051--47790181	40	3.3	40	80	2	156	24	22	28	25	1.99
47791926--47791992	27	2.5	27	76	7	66	26	10	17	44	1.81
47793634--47793861	56	4.1	56	85	5	284	28	13	24	33	1.93
47802514--47802637	39	3.2	39	83	0	158	33	20	23	21	1.97
47810514--47810641	39	3.3	39	80	0	130	31	19	26	22	1.98
47816313--47816366	24	2.3	24	80	3	65	18	20	22	38	1.93
47818388--47818459	36	2.0	36	100	0	144	16	5	16	61	1.53
47823271--47823402	29	4.6	29	84	1	140	25	17	32	25	1.97
47831131--47831262	29	4.6	29	84	1	140	25	17	32	25	1.97
47840664--47840801	42	3.2	42	79	9	120	28	21	19	29	1.98
47851783--47851809	13	2.1	13	100	0	54	29	14	22	33	1.94
47853225--47853260	18	2.0	18	100	0	72	38	16	11	33	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47854083--47854249	40	4.2	40	82	3	178	24	27	22	25	2.00
47856339--47856502	71	2.3	71	100	0	328	18	28	17	35	1.94
47856339--47856536	71	2.8	70	91	3	258	20	28	17	33	1.95
47863898--47864061	71	2.3	71	100	0	328	18	28	17	35	1.94
47863898--47864095	71	2.8	70	91	3	258	20	28	17	33	1.95
47870770--47870900	29	4.5	29	78	5	122	25	17	32	25	1.97
47876860--47876967	39	2.8	38	83	10	114	21	29	25	24	1.99
47878789--47878882	30	3.2	30	87	1	145	27	15	24	31	1.96
47882005--47882032	2	14.0	2	100	0	56	50	0	0	50	1.00
47882511--47882580	27	2.5	28	97	2	133	28	12	27	31	1.93
47890431--47890500	27	2.5	28	97	2	133	28	12	27	31	1.93
47895382--47895646	46	5.7	46	73	15	242	21	19	28	30	1.98
47895379--47895642	92	2.8	93	91	2	424	21	19	28	29	1.98
47903346--47903670	39	8.3	39	93	0	544	29	30	22	17	1.97
47906618--47906691	33	2.4	30	86	10	98	32	25	16	25	1.96
47917482--47917507	13	2.0	13	100	0	52	30	0	15	53	1.42
47917472--47917515	22	2.1	20	91	8	70	31	0	15	52	1.44
47917878--47917919	22	2.0	21	85	4	57	59	0	4	35	1.19
47920673--47920701	15	1.9	15	100	0	58	86	0	0	13	0.58
47923086--47923120	18	1.9	18	100	0	70	51	5	37	5	1.50
47926719--47926772	25	2.3	23	75	15	56	31	16	20	31	1.95
47926819--47926856	10	3.7	10	93	6	67	28	18	18	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47934610--47934656	25	1.9	25	91	4	78	29	14	25	29	1.95
47934608--47934662	25	2.3	23	84	12	74	27	18	21	32	1.96
47938123--47938163	16	2.6	16	96	0	73	48	12	17	21	1.79
47938832--47939027	100	2.0	100	94	3	349	25	18	27	28	1.98
47938846--47939032	49	3.8	49	83	6	252	26	18	26	28	1.98
47942213--47942381	45	3.7	45	77	16	195	21	21	28	28	1.98
47942210--47942378	92	1.8	92	93	2	295	21	21	29	27	1.98
47949811--47949935	46	2.7	46	94	0	214	20	23	28	28	1.99
47952798--47952846	18	2.7	18	78	12	55	4	2	16	77	1.01
47954746--47954999	55	4.8	54	80	8	274	21	25	17	36	1.94
47958053--47958216	40	4.1	40	80	3	168	25	28	20	25	1.99
47958053--47958216	80	2.0	80	81	2	186	25	28	20	25	1.99
47961391--47961606	78	2.7	79	92	3	348	24	27	23	24	2.00
47961391--47961606	40	5.5	40	92	3	350	24	27	23	24	2.00
47979845--47980040	54	3.6	53	79	8	182	21	25	17	35	1.95
47987618--47987658	18	2.3	18	100	0	82	29	17	19	34	1.94
47987625--47987664	18	2.2	18	90	0	62	40	12	17	30	1.86
47991635--47991717	31	2.7	31	94	3	143	27	24	16	31	1.97
47991924--47992007	25	3.4	24	82	9	89	26	22	21	29	1.99
47991937--47992006	25	2.8	25	91	0	104	25	22	24	27	2.00
47992818--47992892	27	2.8	27	76	15	75	21	18	21	38	1.93
47992933--47993018	27	3.1	27	79	14	95	36	9	16	38	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47993020--47993119	27	3.7	27	81	10	132	28	5	22	45	1.73
47993015--47993119	54	1.9	54	88	3	158	29	4	20	44	1.72
47993015--47993152	54	2.6	54	81	6	129	29	8	19	42	1.81
47993151--47993242	27	3.4	27	90	0	139	44	8	19	27	1.80
48000765--48000804	21	2.0	20	90	5	62	10	37	30	22	1.87
48003134--48003189	28	2.0	28	100	0	112	28	21	17	32	1.96
48005363--48005442	27	2.9	27	85	5	99	40	16	10	33	1.82
48005372--48005460	27	3.3	27	84	4	110	40	16	10	32	1.82
48005400--48005633	27	8.6	27	72	10	127	41	19	8	30	1.81
48005413--48005569	81	2.0	80	84	6	210	38	21	8	31	1.83
48005500--48005633	56	2.4	54	81	4	153	44	17	6	31	1.75
48005590--48005641	27	1.9	27	88	7	79	40	11	11	36	1.78
48005693--48005760	27	2.5	27	88	4	93	33	17	25	23	1.96
48006921--48006968	25	1.9	25	86	0	69	33	25	16	25	1.96
48006977--48007032	11	5.5	11	71	16	57	35	12	19	32	1.89
48006972--48007032	20	3.0	20	95	0	113	34	11	19	34	1.88
48007081--48007246	24	7.0	23	86	7	219	28	21	22	27	1.99
48007081--48007245	71	2.3	70	90	4	251	27	21	23	27	1.99
48007081--48007245	23	7.0	24	88	6	239	27	21	23	27	1.99
48007438--48007501	31	2.1	31	93	0	110	34	15	25	25	1.95
48012079--48012178	42	2.4	42	84	0	128	34	14	23	29	1.93
48014706--48014927	79	2.8	79	81	9	263	25	21	27	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48014706--48014913	40	5.2	40	84	7	262	24	21	27	25	1.99
48022916--48023123	40	5.2	40	83	7	253	25	21	27	25	1.99
48022916--48023102	79	2.3	81	83	8	247	24	21	27	26	2.00
48022920--48023136	79	2.7	79	78	12	239	25	21	27	25	1.99
48025370--48025427	30	1.9	30	89	0	89	15	18	39	25	1.91
48027411--48027471	27	2.3	27	82	5	70	32	26	9	31	1.89
48028823--48029089	24	11.1	24	95	0	453	35	25	18	20	1.95
48030695--48031064	27	13.7	27	83	5	408	27	21	9	41	1.84
48030698--48031059	81	4.5	82	87	4	479	27	22	9	41	1.84
48031069--48031263	27	7.2	27	82	2	230	35	17	20	26	1.95
48031069--48031265	54	3.6	54	86	2	270	35	18	19	26	1.95
48031463--48031545	27	3.1	26	84	5	103	20	21	20	37	1.95
48031633--48031691	22	2.7	22	81	0	64	20	25	22	32	1.98
48031856--48031929	27	2.8	27	85	6	89	17	24	21	36	1.95
48032046--48032286	6	39.8	6	74	17	205	20	16	14	48	1.80
48032046--48032286	85	2.8	85	94	0	428	20	16	14	48	1.80
48032046--48032286	30	8.4	30	81	12	308	20	16	14	48	1.80
48034298--48034734	27	16.2	27	83	4	515	27	21	9	41	1.85
48034739--48034916	27	6.6	27	84	1	223	38	19	16	25	1.93
48034739--48034926	54	3.5	54	85	2	252	36	18	18	26	1.94
48034747--48034926	81	2.2	81	86	0	252	36	18	18	25	1.94
48035132--48035214	27	3.1	26	87	5	112	19	21	21	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48035302--48035360	22	2.7	22	83	0	73	20	23	22	33	1.97
48035525--48035598	27	2.8	27	85	6	89	17	24	21	36	1.95
48035716--48035956	6	39.8	6	73	18	198	20	16	14	48	1.81
48035716--48035956	85	2.8	85	94	1	421	20	16	14	48	1.81
48035716--48035956	30	8.4	30	79	14	283	20	16	14	48	1.81
48040244--48040400	42	3.7	42	83	5	192	29	14	26	29	1.95
48040244--48040398	85	1.8	84	84	6	215	29	14	25	30	1.95
48046412--48046497	32	2.7	32	88	0	118	30	27	17	24	1.97
48051241--48051330	32	2.8	32	77	0	99	28	21	18	31	1.97
48055151--48055202	12	3.7	14	80	15	63	80	0	3	15	0.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410