genome.fa.s13.2.7.7.80.10.50.1000.169.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13 124041150 
Parameters: 2 7 7 80 10 50 1000
Length:  124041150

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   

This is table  169  of  410  ( 49152 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51665875--51665915	20	2.0	20	90	0	64	34	9	7	48	1.64
51671950--51672052	29	3.6	28	80	5	116	29	33	16	21	1.95
51679570--51679672	29	3.6	28	80	5	116	29	33	16	21	1.95
51689212--51689400	50	3.8	49	83	3	227	29	28	17	24	1.97
51696614--51696800	50	3.8	48	82	5	212	28	25	19	26	1.99
51698203--51698415	46	4.6	46	79	7	207	28	17	29	24	1.98
51703936--51704033	28	3.5	28	84	4	108	29	16	24	29	1.96
51711614--51711711	28	3.5	28	84	4	108	29	16	24	29	1.96
51719936--51720033	28	3.5	28	84	4	108	29	16	24	29	1.96
51727601--51727698	28	3.5	28	84	4	108	29	16	24	29	1.96
51737312--51737379	33	2.1	33	100	0	136	17	38	22	22	1.93
51738947--51739075	24	5.4	24	92	2	206	27	21	20	29	1.98
51739125--51739163	20	2.0	20	100	0	78	30	20	12	35	1.90
51739126--51739170	20	2.2	20	92	0	72	31	22	13	33	1.92
51740411--51740465	27	2.0	27	86	6	76	21	23	23	30	1.99
51740506--51740758	27	9.3	27	76	4	150	31	8	20	39	1.83
51740737--51741012	27	9.8	27	78	9	212	39	7	23	28	1.83
51740617--51740769	81	1.9	81	83	2	200	32	6	21	39	1.79
51740609--51740866	81	3.2	80	78	6	198	34	7	21	35	1.82
51740826--51740907	38	2.2	38	88	0	119	39	7	30	23	1.82
51740800--51740935	65	2.1	65	85	0	182	39	7	25	27	1.82
51740780--51740963	92	2.0	92	86	0	260	41	7	23	27	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51740737--51741012	146	1.9	146	89	0	426	39	7	23	28	1.83
51740753--51740990	119	2.0	119	85	1	325	41	8	23	27	1.83
51743262--51743416	42	3.7	42	84	1	184	30	13	24	30	1.94
51757576--51757634	25	2.4	25	88	5	84	25	23	18	32	1.97
51759325--51759461	40	3.4	39	84	7	168	31	24	18	25	1.98
51764498--51764618	43	2.8	43	84	0	170	26	18	26	28	1.98
51765652--51765808	27	5.8	27	87	1	199	27	23	9	39	1.86
51765760--51765899	27	5.2	27	76	14	69	37	20	7	34	1.82
51765625--51765819	54	3.6	54	80	1	140	29	24	9	36	1.86
51765802--51765979	27	6.6	27	82	5	209	41	19	8	30	1.82
51765802--51765979	81	2.2	80	90	3	277	41	19	8	30	1.82
51765849--51766007	54	2.9	54	80	9	148	40	20	8	29	1.83
51765802--51766034	81	2.9	81	81	9	253	41	19	9	30	1.82
51766018--51766069	27	1.9	27	92	7	88	38	11	11	38	1.78
51766123--51766214	27	3.4	27	90	3	132	33	20	26	19	1.96
51768451--51768582	29	4.6	29	83	1	149	25	32	16	25	1.96
51776394--51776525	29	4.6	29	83	1	149	25	32	16	25	1.96
51779077--51779179	29	3.6	27	78	5	89	28	32	16	23	1.96
51781601--51781648	25	1.9	25	86	0	69	33	25	16	25	1.96
51781762--51781953	23	8.0	24	88	5	250	29	21	20	28	1.98
51782146--51782209	31	2.1	31	93	0	110	37	12	23	26	1.90
51783613--51783676	31	2.1	31	90	0	101	23	25	15	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51783868--51784034	24	7.0	24	91	3	248	26	22	23	28	1.99
51783867--51784034	71	2.3	71	89	6	250	26	22	23	28	1.99
51784084--51784144	20	3.0	20	90	0	95	31	21	11	36	1.89
51784187--51784234	25	1.9	25	86	0	69	25	16	25	33	1.96
51791987--51792153	24	7.0	24	91	3	248	26	22	22	28	1.99
51792001--51792153	71	2.1	72	91	2	245	26	22	22	28	1.99
51792203--51792263	20	3.0	20	92	0	104	32	21	11	34	1.89
51795265--51795296	2	16.0	2	100	0	64	50	0	0	50	1.00
51799413--51799717	43	7.0	43	85	4	423	23	17	29	30	1.97
51799905--51799961	28	2.0	28	93	0	96	28	15	28	28	1.96
51802021--51802075	28	1.9	29	81	3	67	18	43	23	14	1.87
51803400--51803614	46	4.6	48	75	5	179	24	25	19	31	1.98
51803400--51803614	94	2.3	94	83	1	270	24	25	19	31	1.98
51810396--51810525	50	2.6	49	88	1	179	30	26	17	25	1.97
51810396--51810579	101	1.8	99	83	2	242	28	27	18	26	1.98
51813831--51814006	46	3.8	45	77	7	183	22	21	27	28	1.99
51813828--51813998	93	1.8	93	93	0	297	22	21	27	28	1.99
51815949--51816050	29	3.5	29	90	0	150	23	33	15	27	1.95
51823807--51823908	29	3.5	29	90	0	150	23	33	15	27	1.95
51827838--51827917	15	5.4	15	77	7	83	10	18	13	57	1.64
51827829--51827916	30	3.0	30	80	11	92	10	18	15	55	1.68
51837161--51837379	40	5.5	39	81	5	199	25	25	22	27	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51837161--51837380	80	2.7	79	81	2	242	25	25	22	27	2.00
51839611--51839667	28	2.0	28	100	0	114	26	14	28	31	1.94
51841148--51841256	56	1.9	57	83	5	141	26	32	14	26	1.95
51841145--51841256	28	4.0	28	84	2	127	27	31	14	26	1.95
51841479--51841529	16	3.2	16	82	0	66	11	21	17	49	1.79
51850222--51850246	13	1.9	13	100	0	50	0	40	28	32	1.57
51855749--51855897	49	3.2	44	74	10	122	25	28	20	26	1.99
51855875--51856088	46	4.6	48	79	6	208	24	27	19	28	1.99
51855875--51856088	94	2.3	93	83	7	247	24	27	19	28	1.99
51861481--51861540	30	2.0	30	84	12	79	26	23	31	18	1.97
51861907--51861956	18	2.7	19	87	12	61	30	0	8	62	1.24
51861915--51861956	18	2.3	18	92	8	68	30	0	4	64	1.14
51865814--51865853	21	1.9	21	85	10	55	35	5	2	57	1.34
51866524--51866595	36	2.0	37	86	2	101	58	2	5	33	1.36
51866519--51866579	17	3.5	17	70	16	52	57	4	3	34	1.36
51867404--51867471	19	3.6	18	73	13	57	60	0	2	36	1.12
51867513--51867558	23	2.0	23	86	0	65	34	6	4	54	1.46
51867520--51867550	15	2.1	15	93	0	53	35	6	3	54	1.42
51867621--51867722	21	4.7	22	75	11	77	28	0	3	66	1.15
51869004--51869043	11	3.7	11	80	6	55	20	15	10	55	1.68
51869080--51869142	30	2.1	30	93	0	108	23	3	14	58	1.50
51875260--51875319	18	3.3	18	73	0	57	43	21	13	21	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51880213--51880590	191	2.0	191	93	0	648	24	19	30	26	1.98
51882499--51882544	19	2.3	20	92	7	85	26	10	15	47	1.78
51885511--51885649	40	3.5	40	83	2	147	25	23	28	23	2.00
51885462--51885642	79	2.3	81	81	7	210	24	23	27	24	2.00
51887195--51887255	32	1.9	32	93	0	104	49	18	4	27	1.68
51887195--51887265	32	2.4	30	84	11	85	49	18	4	28	1.66
51891154--51891214	29	2.1	29	84	6	79	67	6	19	6	1.36
51895699--51895723	13	1.9	13	100	0	50	12	0	0	88	0.53
51895692--51895731	21	1.9	21	84	0	53	17	2	0	80	0.83
51897690--51897753	28	2.3	28	88	0	92	18	18	37	25	1.94
51898092--51898302	27	7.9	27	83	5	250	38	19	9	31	1.85
51898093--51898329	27	8.9	26	81	7	210	37	19	11	30	1.87
51898254--51898343	27	3.3	27	88	0	117	36	16	17	28	1.92
51899841--51899874	13	2.9	11	84	16	50	17	0	23	58	1.38
51905287--51905348	27	2.2	28	80	11	74	45	6	0	48	1.28
51907340--51907511	93	1.8	93	96	0	317	27	29	21	20	1.98
51907332--51907507	46	3.8	46	80	12	225	28	28	21	21	1.98
51909888--51909976	30	3.0	30	80	8	101	57	15	16	10	1.65
51909888--51909967	15	5.4	15	80	7	92	58	13	17	10	1.62
51909899--51909976	15	5.2	15	78	9	79	56	15	16	11	1.67
51912932--51913103	93	1.8	93	96	0	317	27	29	21	20	1.98
51912924--51913099	46	3.8	46	80	12	225	28	28	21	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51915414--51915455	20	2.1	20	100	0	84	33	19	4	42	1.72
51916552--51916632	33	2.6	32	92	7	139	38	0	8	53	1.32
51916568--51916624	16	3.7	15	71	15	53	33	0	8	57	1.29
51917323--51917361	18	2.2	18	100	0	78	41	17	10	30	1.83
51917559--51917616	30	1.9	30	85	0	80	44	1	3	50	1.29
51917935--51917966	2	16.0	2	100	0	64	50	0	0	50	1.00
51921642--51921691	11	3.5	15	74	23	54	32	4	6	58	1.41
51923374--51923400	14	1.9	14	100	0	54	74	0	0	25	0.83
51925881--51925922	16	2.6	16	81	11	50	71	0	2	26	0.98
51927558--51927611	12	4.4	13	75	11	51	31	1	1	64	1.14

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410