genome.fa.s13.2.7.7.80.10.50.1000.186.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13 124041150 
Parameters: 2 7 7 80 10 50 1000
Length:  124041150

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   

This is table  186  of  410  ( 49152 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56828997--56829149	43	3.6	43	78	7	141	28	16	22	32	1.95
56831429--56831468	16	2.5	16	95	0	71	7	10	25	57	1.57
56835727--56835986	49	5.3	49	90	6	411	30	29	8	31	1.86
56839257--56839409	39	3.9	39	92	0	252	23	20	32	23	1.98
56839258--56839439	39	4.6	39	89	0	247	23	21	31	23	1.98
56847448--56847601	55	2.9	55	85	4	199	25	8	14	50	1.71
56850860--56850896	2	18.5	2	100	0	74	51	0	0	48	1.00
56851031--56851078	17	2.9	16	84	3	60	45	0	6	47	1.27
56851089--56851113	13	1.9	13	100	0	50	60	0	0	40	0.97
56853768--56853924	58	2.8	57	88	5	221	38	14	21	26	1.91
56853881--56853936	23	2.4	23	78	0	58	35	14	25	25	1.93
56854164--56854275	23	4.9	23	75	8	95	27	19	16	35	1.94
56854233--56854390	58	2.8	57	90	3	246	24	17	16	41	1.89
56856070--56856103	3	11.3	3	100	0	68	35	0	0	64	0.94
56856327--56856364	19	2.0	20	89	5	60	44	0	5	50	1.24
56857027--56857136	45	2.5	44	82	4	132	22	17	18	41	1.90
56863151--56863192	20	2.2	19	87	12	59	38	0	4	57	1.20
56863151--56863245	3	32.7	3	68	14	56	36	0	6	56	1.25
56863201--56863247	23	2.0	23	87	0	67	42	0	4	53	1.20
56863497--56863534	3	12.7	3	100	0	76	65	0	0	34	0.93
56863533--56863563	3	10.3	3	100	0	62	35	0	0	64	0.94
56864223--56864322	45	2.2	45	85	3	139	23	19	18	40	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56866384--56866463	25	3.2	25	75	8	67	32	20	26	21	1.97
56866398--56866463	24	2.7	25	78	2	71	33	21	24	21	1.97
56872339--56872462	43	2.9	43	76	8	119	26	12	26	34	1.91
56874538--56874588	25	2.0	25	96	0	93	39	11	7	41	1.71
56875341--56875386	24	1.9	24	86	0	65	32	26	28	13	1.93
56879228--56879252	13	1.9	13	100	0	50	32	4	8	56	1.47
56882263--56882336	37	2.0	37	97	0	139	25	16	25	32	1.96
56890043--56890077	15	2.3	15	90	9	54	28	8	34	28	1.87
56889994--56890125	63	2.1	63	97	1	246	31	7	31	30	1.85
56890057--56890289	46	5.0	47	89	4	303	31	6	32	29	1.84
56890162--56890239	25	3.3	24	68	14	72	33	3	30	32	1.76
56890057--56890289	94	2.5	93	87	6	310	31	6	32	29	1.84
56892049--56892178	40	3.2	40	82	4	165	23	24	28	23	2.00
56900056--56900199	40	3.6	40	79	5	150	27	24	27	20	1.99
56900093--56900222	40	3.2	40	82	4	165	23	24	28	23	2.00
56909487--56909654	40	4.2	40	82	2	196	25	27	22	25	2.00
56914144--56914388	40	6.2	40	88	0	312	24	21	27	26	1.99
56914602--56914648	23	2.0	24	95	4	87	36	0	21	42	1.53
56922314--56922558	40	6.2	40	87	2	309	24	21	28	26	1.99
56922314--56922532	79	2.8	80	87	2	298	25	21	28	24	1.99
56922314--56922532	119	1.8	118	86	0	312	25	21	28	24	1.99
56922747--56922812	24	2.8	24	86	4	80	36	0	27	36	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56922771--56922820	24	2.1	24	100	0	100	38	0	20	42	1.52
56933907--56934000	38	2.5	38	98	0	179	27	13	26	31	1.94
56934599--56934783	40	4.7	39	80	9	205	24	23	25	25	2.00
56934600--56934783	79	2.3	81	83	7	225	25	23	26	25	2.00
56939722--56941548	944	1.9	944	91	1	2971	28	17	25	29	1.97
56947846--56947990	27	5.4	27	88	0	182	37	20	19	23	1.94
56947846--56947991	54	2.7	54	88	0	202	37	19	19	23	1.94
56948724--56948765	2	21.0	2	95	0	75	47	0	2	50	1.14
56952026--56952057	13	2.5	13	100	0	64	40	0	0	59	0.97
56952982--56953143	87	1.9	87	84	7	222	19	22	29	28	1.98
56953522--56953559	20	2.1	18	85	14	51	36	0	10	52	1.36
56954157--56954282	40	3.2	39	84	3	153	16	28	19	35	1.93
56954215--56954345	60	2.2	59	84	1	172	14	28	22	35	1.93
56954161--56954364	99	2.0	100	83	4	252	15	27	19	37	1.92
56954161--56954364	20	10.2	20	69	11	107	15	27	19	37	1.92
56956368--56956431	19	3.3	19	72	12	58	35	15	32	15	1.90
56956320--56956712	39	10.1	39	78	1	385	33	17	33	16	1.92
56958096--56958206	50	2.3	47	80	7	116	21	19	27	30	1.98
56959532--56959703	93	1.8	93	96	0	317	27	29	21	20	1.98
56959525--56959700	46	3.8	46	79	12	216	28	29	21	20	1.98
56967059--56967230	93	1.8	93	96	0	317	27	29	21	20	1.98
56967052--56967227	46	3.8	46	79	12	216	28	29	21	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56974136--56974312	46	3.9	46	80	6	216	21	21	29	27	1.99
56974135--56974304	92	1.8	92	91	2	279	21	21	30	27	1.98
56976705--56976868	40	4.1	40	78	6	170	25	21	27	25	1.99
56977093--56977155	32	1.9	33	90	9	103	36	3	19	41	1.67
56984828--56984991	40	4.1	40	77	6	161	25	20	27	26	1.99
56985210--56985282	36	2.0	36	100	0	146	38	2	19	39	1.66
56988738--56988888	43	3.6	42	72	5	126	29	26	16	27	1.97
56991759--56991858	51	2.0	51	85	0	137	20	18	30	32	1.96
56993850--56993901	21	2.5	22	81	15	65	38	3	21	36	1.72
56994658--56994759	35	2.9	35	77	5	98	41	16	14	27	1.88
56996226--56996266	21	2.0	21	90	0	64	46	19	9	24	1.80
56999714--56999779	28	2.4	28	89	0	105	33	37	12	16	1.86
56999714--56999818	28	3.8	28	81	7	99	33	33	9	23	1.87
57001090--57001144	26	2.1	26	100	0	110	34	21	3	40	1.71
57001088--57001156	26	2.8	25	87	10	97	30	24	2	42	1.69
57001946--57001989	16	3.2	13	80	20	54	0	15	0	84	0.63
57001953--57001994	15	2.8	15	89	7	59	2	14	0	83	0.75
57014216--57014247	15	2.1	16	94	5	57	43	0	15	40	1.47
57014233--57014272	20	2.0	20	85	9	55	42	2	12	42	1.56
57014607--57014702	18	5.3	18	83	5	122	40	11	12	35	1.79
57016670--57016771	29	3.5	29	90	0	150	23	33	15	27	1.95
57016613--57016772	87	1.8	87	80	5	189	24	33	16	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57020204--57020370	40	4.2	40	82	2	185	25	27	21	25	1.99
57020204--57020370	80	2.1	79	83	7	205	25	27	21	25	1.99
57021195--57021240	17	2.5	19	74	22	53	34	23	17	23	1.96
57028176--57028340	40	4.2	40	79	5	167	24	27	21	25	1.99
57028192--57028300	38	2.8	37	84	5	128	24	30	22	22	1.99
57028192--57028339	78	1.9	77	83	6	192	24	28	22	25	1.99
57029166--57029211	17	2.5	19	74	22	53	34	23	17	23	1.96
57036795--57036957	40	4.1	40	82	5	179	25	27	22	25	2.00
57036781--57036957	80	2.2	79	82	4	205	24	27	22	25	2.00
57039176--57039211	15	2.4	15	90	0	54	61	16	8	13	1.56
57039185--57039241	30	1.9	30	85	0	78	56	12	14	17	1.68
57040267--57040376	27	4.1	26	88	8	157	39	20	24	15	1.92
57041764--57041820	25	2.3	24	93	6	96	19	38	5	36	1.74
57041764--57041827	25	2.6	25	90	5	85	17	42	4	35	1.70
57048276--57048351	28	2.7	29	85	4	100	27	14	26	31	1.95
57055556--57055654	28	3.5	28	84	4	110	28	15	26	30	1.96
57057852--57057936	27	3.2	26	85	8	116	37	21	24	16	1.93
57058349--57058373	8	3.1	8	100	0	50	0	24	24	52	1.48
57059325--57059381	25	2.3	25	90	6	89	21	38	3	36	1.70
57063006--57063060	24	2.3	24	83	0	74	49	23	1	25	1.60
57081789--57081887	28	3.5	29	82	6	114	28	15	26	30	1.96
57086681--57086706	11	2.4	11	100	0	52	42	11	26	19	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57086820--57086923	42	2.4	43	82	6	131	25	18	25	31	1.97
57086785--57086941	43	3.7	43	75	9	151	23	18	27	30	1.98
57102907--57102958	21	2.2	25	83	12	67	32	1	23	42	1.65
57110239--57110411	46	3.7	46	84	5	188	28	19	28	23	1.98
57113469--57113617	80	1.9	80	81	2	183	22	30	24	22	1.99
57113510--57113617	40	2.7	38	85	8	128	21	29	25	23	1.99
57122761--57122807	23	2.0	25	83	8	62	21	4	38	36	1.73
57124819--57124912	38	2.5	38	100	0	188	26	13	27	31	1.94
57125511--57125694	79	2.3	81	84	7	234	25	22	26	25	2.00
57125511--57125694	40	4.6	39	82	9	212	25	22	26	25	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410