Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13 124041150 
Parameters: 2 7 7 80 10 50 1000
Length:  124041150

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   

This is table  358  of  410  ( 49152 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
110439183--110439221
20
1.9
19
85
10
51
53
15
7
23
1.67
110442785--110442823
19
2.1
19
100
0
78
30
15
20
33
1.94
110442804--110443055
79
3.2
79
88
1
362
18
19
24
36
1.94
110445677--110445760
39
2.2
39
91
0
132
13
28
22
35
1.92
110453037--110453107
35
2.0
35
100
0
142
40
14
11
33
1.81
110455632--110455659
9
3.1
9
100
0
56
0
42
0
57
0.99
110456111--110456273
3
53.0
3
71
18
97
33
1
3
61
1.22
110456442--110456499
24
2.5
22
78
13
64
25
3
5
65
1.29
110468377--110468817
153
2.9
152
90
3
681
30
16
19
33
1.94
110468377--110468817
75
5.8
76
83
5
539
30
16
19
33
1.94
110469839--110469904
19
3.5
19
97
0
123
50
27
12
10
1.72
110470639--110470803
3
54.0
3
73
16
119
33
1
2
61
1.19
110470912--110470970
31
2.0
29
83
12
75
32
5
1
61
1.28
110471849--110471904
26
2.1
28
90
6
89
57
14
8
19
1.63
110477506--110477539
15
2.3
15
89
0
50
50
11
2
35
1.54
110478059--110478088
3
10.0
3
100
0
60
66
0
0
33
0.92
110483300--110483326
14
1.9
14
100
0
54
51
7
18
22
1.70
110487235--110487679
224
2.0
226
95
1
797
44
17
13
24
1.84
110488563--110488592
2
15.0
2
100
0
60
50
0
0
50
1.00
110491789--110491920
69
1.9
69
84
0
174
34
20
8
37
1.83
110492209--110492286
40
1.9
41
84
7
106
47
1
6
44
1.36
110494774--110494840
20
3.4
20
64
12
57
64
4
2
28
1.28
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
110495086--110495170
27
3.1
26
73
15
73
30
4
1
63
1.22
110495122--110495192
19
3.7
18
78
9
70
25
4
2
67
1.22
110495086--110495219
56
2.3
57
80
8
148
30
5
1
62
1.26
110495086--110495243
28
5.6
28
71
12
110
33
4
1
60
1.24
110495195--110495248
26
2.0
27
85
7
74
46
1
0
51
1.11
110495265--110495291
12
2.2
12
100
0
54
14
0
7
77
0.97
110494974--110495648
341
2.0
342
99
0
1325
34
4
4
56
1.41
110495427--110495511
27
3.1
26
73
15
73
30
4
1
63
1.22
110495463--110495533
19
3.7
18
78
9
70
25
4
2
67
1.22
110495427--110495561
56
2.4
57
80
8
150
30
5
1
62
1.25
110495427--110495578
28
5.4
27
72
10
103
31
4
1
62
1.24
110495535--110495588
26
2.0
27
85
7
74
42
1
0
55
1.10
110495606--110495632
12
2.2
12
100
0
54
14
0
7
77
0.97
110495653--110495815
89
1.8
89
81
1
202
34
10
20
34
1.87
110501453--110501502
13
3.8
13
81
0
64
44
20
2
34
1.63
110501453--110501503
26
2.0
26
88
0
75
43
19
3
33
1.70
110502752--110502799
24
2.0
24
100
0
96
33
25
8
33
1.86
110507726--110507761
5
7.6
5
87
12
58
16
0
0
83
0.65
110507866--110507898
15
2.3
15
89
5
50
48
6
0
45
1.27
110511478--110511520
18
2.4
17
81
11
50
51
18
2
27
1.59
110515225--110515250
9
2.9
9
100
0
52
23
19
11
46
1.82
110533694--110533741
24
2.0
24
95
0
87
52
16
18
12
1.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
110534855--110534986
66
2.0
66
97
2
248
41
18
21
18
1.90
110535019--110535252
117
2.0
116
93
0
396
38
14
30
16
1.88
110543994--110544042
23
2.1
24
85
11
66
44
6
0
48
1.27
110551673--110551718
18
2.6
17
82
3
56
86
4
6
2
0.75
110553715--110553811
45
2.2
46
88
3
144
30
17
22
28
1.97
110553603--110554120
177
2.9
176
89
1
793
31
18
21
28
1.97
110553780--110554408
309
2.0
310
90
0
974
31
18
20
29
1.96
110553957--110554252
132
2.2
132
92
0
484
30
19
20
28
1.97
110554089--110554408
177
1.8
178
91
0
534
30
19
20
30
1.97
110554376--110554606
84
2.7
84
81
8
241
35
21
23
19
1.96
110556846--110556890
22
2.0
22
95
0
81
48
11
0
40
1.39
110557791--110557860
27
2.5
28
79
6
79
41
35
4
18
1.70
110558403--110558525
51
2.4
52
87
2
169
27
21
11
39
1.87
110560410--110560447
20
1.9
19
89
5
58
36
0
5
57
1.21
110560755--110560817
9
7.6
9
69
26
50
23
0
19
57
1.41
110560756--110560817
27
2.5
25
87
10
83
24
0
19
56
1.42
110565944--110565974
16
1.9
16
100
0
62
25
6
0
67
1.14
110566286--110566372
41
2.2
40
82
2
102
66
5
1
26
1.21
110566355--110566426
27
2.6
26
77
12
72
63
0
5
30
1.17
110566388--110566429
23
2.0
22
86
13
61
64
0
4
30
1.14
110570679--110570716
17
2.3
17
95
4
69
31
0
15
52
1.43
110576315--110576352
20
1.9
20
88
0
58
36
2
10
50
1.51
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
110577801--110577837
19
1.9
19
88
0
56
59
0
2
37
1.12
110578036--110578117
19
4.2
20
78
12
98
37
2
1
58
1.19
110578025--110578102
39
2.0
40
85
7
106
37
3
2
56
1.31
110578036--110578179
10
15.2
10
75
15
96
38
1
0
59
1.11
110578113--110578161
8
5.9
8
88
9
62
34
0
0
65
0.93
110578050--110578154
19
5.7
19
72
19
80
37
1
0
60
1.15
110578114--110578173
27
2.3
26
85
8
77
40
0
0
60
0.97
110578045--110578225
19
9.7
19
68
19
73
35
1
1
61
1.16
110578228--110578433
87
2.3
91
80
8
242
36
9
16
38
1.80
110590578--110590622
23
2.0
23
82
8
56
37
8
13
40
1.76
110595008--110595063
28
2.0
28
96
0
103
21
16
16
46
1.84
110600916--110601304
191
2.0
195
90
4
615
28
17
19
34
1.95
110605852--110605912
31
2.0
31
86
0
86
44
1
6
47
1.39
110607621--110607898
112
2.4
115
79
4
312
25
20
16
38
1.93
110608075--110608103
2
14.5
2
100
0
58
51
0
0
48
1.00
110611094--110611163
22
3.2
22
69
15
72
52
10
0
37
1.35
110611094--110611281
44
4.5
44
82
15
247
48
10
0
40
1.37
110611105--110611174
22
3.2
22
67
15
63
51
11
0
37
1.38
110611156--110611220
32
2.0
32
100
0
130
41
9
0
49
1.35
110611112--110611264
76
2.0
76
96
0
279
47
10
0
42
1.38
110611847--110611929
5
15.2
5
71
16
58
49
0
18
32
1.48
110611847--110611929
11
7.6
10
77
15
58
49
0
18
32
1.48
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
110611911--110611964
17
3.1
17
75
24
58
57
0
12
29
1.36
110611951--110611987
18
2.1
17
95
5
65
70
2
10
16
1.27
110612017--110612076
21
2.9
21
80
14
70
65
0
11
23
1.26
110615251--110615283
17
1.9
17
88
11
50
21
6
0
72
1.05
110619588--110619626
18
2.2
18
90
0
60
20
15
15
48
1.81
110626924--110627247
113
2.8
115
81
6
392
36
21
17
24
1.94
110628742--110628847
42
2.5
42
77
10
117
49
16
17
16
1.81
110628787--110628842
21
2.7
21
74
0
58
46
17
19
16
1.84
110630625--110630668
21
2.0
22
87
12
65
43
4
4
47
1.44
110630686--110630773
43
2.0
43
100
0
176
42
11
9
37
1.73
110639019--110639068
26
1.9
26
87
0
73
52
0
2
46
1.12
110638981--110639069
31
3.0
30
69
23
73
50
2
3
43
1.31
110642724--110642757
12
2.9
12
91
4
52
0
23
0
76
0.79
110645485--110645573
18
5.0
17
85
6
115
31
19
12
37
1.88
110645481--110645574
36
2.6
37
86
5
138
31
19
12
36
1.89
110652055--110652125
29
2.4
29
80
4
79
35
5
15
43
1.70
110654407--110654439
8
4.2
8
92
7
50
45
0
0
54
0.99
110656291--110656340
26
1.9
26
91
0
82
52
0
4
44
1.20
110657532--110657575
20
2.2
20
84
11
56
40
11
22
25
1.87
110657623--110657651
2
14.5
2
100
0
58
48
0
0
51
1.00
110666063--110666140
25
3.2
25
76
9
79
42
0
5
52
1.23
110666126--110666192
20
3.1
22
77
14
77
44
1
0
53
1.09
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
110666231--110666299
17
4.3
16
72
20
56
44
1
0
53
1.09
110666242--110666309
18
3.4
21
77
16
74
48
1
0
50
1.10
110666347--110666463
20
5.6
19
70
23
60
56
0
0
43
0.99
110666377--110666456
13
7.2
13
74
25
69
57
0
0
42
0.98
110666353--110666456
32
3.2
33
83
12
137
55
0
0
44
0.99
110666360--110666458
20
4.8
19
72
26
78
55
0
0
44
0.99
110666505--110666572
21
3.2
20
85
8
82
54
0
0
45
0.99
110666520--110666578
21
2.8
20
87
10
82
62
0
0
37
0.95
110666619--110666644
13
2.0
13
100
0
52
76
0
0
23
0.78
110671509--110671540
3
10.7
3
100
0
64
68
0
0
31
0.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410