genome.fa.s13.2.7.7.80.10.50.1000.351.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13 124041150 
Parameters: 2 7 7 80 10 50 1000
Length:  124041150

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   

This is table  351  of  410  ( 49152 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108389956--108389990	16	2.2	16	90	10	54	42	5	25	25	1.77
108389975--108390077	44	2.4	42	81	15	106	33	4	26	35	1.78
108390166--108390333	59	2.9	56	79	12	164	56	2	2	38	1.25
108390242--108390295	20	2.7	21	81	16	69	61	0	0	38	0.96
108390166--108390319	57	2.7	57	75	18	153	57	2	1	38	1.21
108392170--108392209	20	2.0	20	100	0	80	50	0	5	45	1.23
108392429--108392468	19	2.2	18	86	13	55	70	0	30	0	0.88
108396812--108396932	23	5.3	23	77	4	109	46	11	13	28	1.78
108396812--108396919	46	2.3	46	90	0	162	47	12	12	27	1.77
108400300--108400367	30	2.3	29	85	10	84	45	1	4	48	1.31
108402510--108402594	18	4.5	19	72	21	54	36	1	3	58	1.23
108403100--108403124	7	3.6	7	100	0	50	28	40	16	16	1.89
108404497--108404696	100	2.0	100	97	0	373	42	17	14	26	1.87
108408838--108408958	10	11.5	10	66	16	57	34	3	1	60	1.23
108410451--108410482	14	2.3	14	94	0	55	65	0	3	31	1.08
108417394--108417601	40	5.2	40	79	3	168	26	22	25	25	2.00
108417395--108417601	80	2.6	80	81	4	229	26	22	25	26	2.00
108430081--108430288	40	5.2	40	84	0	218	25	22	25	25	2.00
108430082--108430288	80	2.6	80	83	4	247	25	22	26	25	2.00
108432355--108432390	13	2.8	13	100	0	72	33	0	13	52	1.41
108432388--108432463	3	25.3	3	92	5	127	34	0	0	65	0.93
108433494--108433608	27	4.3	26	85	5	140	36	20	24	18	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108433494--108433608	54	2.1	54	87	3	169	36	20	24	18	1.95
108435222--108435331	26	4.2	26	95	2	177	36	24	4	34	1.76
108439303--108439417	27	4.3	26	84	5	131	37	21	23	17	1.94
108439303--108439417	54	2.1	54	83	3	151	37	21	23	17	1.94
108441029--108441138	26	4.2	26	92	2	168	36	23	4	35	1.76
108442758--108442850	43	2.2	44	90	3	145	51	12	6	29	1.65
108442872--108442911	19	2.2	18	86	13	55	42	15	2	40	1.60
108447471--108447562	42	2.2	44	90	5	145	52	13	6	28	1.65
108447584--108447623	19	2.2	18	86	13	55	42	15	2	40	1.60
108449924--108450136	43	5.0	43	89	0	309	26	15	27	30	1.96
108457742--108457838	40	2.5	38	77	12	115	32	35	13	18	1.90
108475493--108475705	43	5.0	42	89	4	286	24	18	28	27	1.98
108486296--108486452	43	3.7	42	78	10	149	31	26	17	24	1.97
108488434--108488476	16	2.9	14	77	16	50	2	23	6	67	1.27
108490101--108490214	27	4.3	26	85	7	140	36	23	22	16	1.94
108490101--108490214	54	2.1	53	87	4	158	36	23	22	16	1.94
108491822--108491957	26	5.2	26	96	1	220	36	25	5	33	1.78
108498108--108498222	27	4.3	26	87	5	149	36	23	23	16	1.94
108498108--108498222	54	2.1	54	88	3	169	36	23	23	16	1.94
108499833--108499942	26	4.2	26	95	0	175	35	23	5	35	1.78
108504265--108504335	20	3.3	20	68	24	63	47	11	7	33	1.66
108504243--108504337	45	2.1	45	100	0	190	48	10	6	34	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108504248--108504321	25	3.2	25	70	18	86	48	10	6	33	1.64
108504690--108504871	46	4.0	46	89	1	240	23	23	13	40	1.89
108505229--108505276	23	2.0	23	84	4	60	33	25	25	16	1.96
108507291--108507326	2	18.0	2	100	0	72	50	0	0	50	1.00
108519744--108519781	18	2.2	17	86	13	51	50	7	10	31	1.66
108527424--108527463	19	2.0	20	95	4	73	47	10	5	37	1.59
108528965--108529325	46	7.7	46	70	10	187	26	29	18	26	1.98
108528965--108529324	94	3.8	93	80	7	358	25	29	18	26	1.98
108535275--108535371	44	2.3	42	85	5	124	31	13	16	38	1.87
108535289--108535380	44	2.1	44	93	0	157	26	13	20	40	1.89
108535413--108535457	21	2.0	23	84	16	60	26	0	4	68	1.08
108537521--108537583	32	2.0	32	96	0	117	12	22	19	46	1.83
108541741--108541774	16	2.1	16	88	0	50	41	14	17	26	1.88
108542535--108542579	23	1.9	24	90	4	74	15	35	4	44	1.67
108557477--108557519	22	2.0	23	86	9	63	32	18	13	34	1.90
108559608--108559677	34	2.1	34	86	0	95	35	14	22	27	1.93
108566346--108566411	27	2.5	26	82	9	71	33	0	1	65	1.02
108566346--108566403	26	2.1	27	84	9	73	36	0	0	63	0.94
108569419--108569446	14	2.0	14	100	0	56	35	14	14	35	1.86
108570678--108570761	19	4.3	19	68	14	62	34	4	8	52	1.53
108579373--108579404	2	16.0	2	100	0	64	50	0	0	50	1.00
108580507--108580814	125	2.4	125	87	4	442	39	15	17	27	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108583860--108583943	39	2.2	39	82	4	98	51	7	4	36	1.51
108583920--108584119	55	3.4	55	68	23	145	54	4	5	36	1.43
108583945--108584136	63	3.1	62	65	28	145	54	4	4	35	1.42
108583897--108584266	123	2.9	126	87	7	531	55	4	4	35	1.40
108585332--108585364	7	4.7	7	92	0	57	60	12	0	27	1.32
108586485--108586531	21	2.2	21	82	14	53	46	6	19	27	1.74
108586520--108586566	11	4.3	10	86	10	58	42	0	31	25	1.55
108586515--108586560	11	4.4	11	86	8	60	45	0	26	28	1.54
108605145--108605180	18	2.0	18	100	0	72	11	16	16	55	1.68
108608712--108608741	15	2.0	15	100	0	60	66	0	6	26	1.16
108608960--108609024	30	2.2	30	82	0	76	36	1	1	60	1.16
108609946--108610004	29	2.0	29	100	0	118	25	6	23	44	1.78
108612573--108612598	5	5.2	5	100	0	52	19	19	42	19	1.90
108615065--108615139	25	3.0	25	100	0	150	36	8	24	32	1.84
108615991--108620343	973	4.5	956	84	6	5205	35	18	16	30	1.92
108621093--108621118	8	3.2	8	100	0	52	23	11	0	65	1.25
108624192--108624246	20	3.0	20	80	15	57	47	1	0	50	1.11
108628229--108628287	18	3.2	18	71	4	55	45	13	22	18	1.84
108630426--108630487	19	3.3	19	65	13	56	45	3	1	50	1.27
108630423--108630494	37	1.9	37	88	5	110	43	2	2	51	1.30
108631238--108631372	64	2.1	65	94	1	236	22	40	5	31	1.76
108633752--108633785	15	2.3	15	90	10	52	76	0	0	23	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108634683--108634750	18	3.9	17	81	14	59	69	1	2	26	1.12
108641215--108641264	26	2.0	26	88	7	77	30	0	6	64	1.18
108643487--108643536	26	2.0	26	88	4	75	60	0	10	30	1.30
108648286--108648399	51	2.2	51	95	0	201	28	23	14	33	1.94
108656103--108656281	58	3.0	58	83	10	241	26	24	15	32	1.95
108656157--108656278	65	1.9	65	94	0	217	23	24	18	33	1.96
108659442--108659825	178	2.2	179	87	0	572	29	17	21	31	1.96
108659796--108660160	143	2.6	143	84	2	491	28	22	18	30	1.97
108660034--108660250	44	4.9	45	76	6	201	27	23	18	30	1.98
108660024--108660252	89	2.6	88	83	4	264	26	22	18	32	1.97
108660637--108660780	46	3.1	46	89	0	198	24	26	15	33	1.95
108661215--108661264	25	2.0	25	100	0	100	60	8	12	20	1.57
108661642--108661685	18	2.4	19	84	3	54	0	11	6	81	0.86
108664061--108664307	125	2.0	123	96	3	460	20	19	17	41	1.90
108664999--108665166	83	2.0	83	91	2	275	16	19	15	49	1.80
108672217--108672282	31	2.1	31	91	0	105	50	18	4	27	1.66
108682758--108682808	15	3.4	15	73	7	50	64	0	0	35	0.94
108695769--108695934	35	4.6	35	82	8	172	31	10	24	33	1.90
108695769--108695939	75	2.4	75	85	7	221	31	11	23	33	1.90
108703262--108703427	35	4.6	35	82	8	172	31	10	24	33	1.90
108703262--108703432	75	2.4	75	85	7	221	31	11	23	33	1.90
108706251--108706288	12	2.9	13	84	11	51	68	0	0	31	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108706522--108706559	2	19.0	2	100	0	76	50	0	0	50	1.00
108715492--108715570	31	2.6	32	77	18	89	35	6	11	46	1.65
108719904--108720044	73	1.9	73	84	5	187	34	21	24	19	1.97
108719928--108720082	25	6.2	25	70	11	97	35	21	23	18	1.96
108720012--108720082	26	2.8	26	80	2	81	36	22	23	16	1.94
108722097--108722149	16	3.3	16	76	10	63	35	24	5	33	1.79
108723438--108723489	26	2.0	26	84	0	68	50	1	0	48	1.12
108725381--108725459	26	3.0	25	75	8	77	48	3	1	46	1.28
108725360--108725449	26	3.8	24	74	20	73	46	6	0	46	1.29
108730109--108730181	9	8.6	9	71	25	61	56	19	0	24	1.42

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410