genome.fa.s13.2.7.7.80.10.50.1000.107.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13 124041150 
Parameters: 2 7 7 80 10 50 1000
Length:  124041150

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   

This is table  107  of  410  ( 49152 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31522753--31522936	39	4.7	39	86	6	246	28	23	18	28	1.98
31522758--31522936	79	2.3	78	90	5	272	28	24	18	29	1.98
31541924--31541984	30	2.0	31	83	3	79	31	22	4	40	1.75
31555085--31555169	18	4.7	18	82	1	98	40	14	9	36	1.78
31555298--31555404	47	2.3	47	86	0	142	44	20	16	17	1.86
31557056--31557095	16	2.4	16	84	16	55	7	15	2	75	1.14
31557197--31557259	31	2.0	32	84	9	85	49	4	0	46	1.23
31559629--31559692	31	2.1	31	87	0	92	25	21	15	37	1.93
31559898--31560049	24	6.4	24	90	3	236	26	21	22	29	1.99
31559898--31560049	71	2.1	71	93	1	259	26	21	22	29	1.99
31559898--31560049	47	3.2	48	90	3	236	26	21	22	29	1.99
31560108--31560164	9	5.9	9	73	15	51	35	21	8	35	1.84
31560096--31560166	20	3.5	20	94	0	124	32	21	11	35	1.89
31560101--31560155	11	5.4	11	70	16	55	30	20	12	36	1.90
31560203--31560250	25	1.9	25	82	0	60	25	14	25	35	1.94
31561387--31561472	27	3.2	27	76	0	91	30	6	24	38	1.82
31561451--31561787	27	12.6	27	85	4	423	38	9	23	27	1.86
31570012--31570278	24	11.1	24	97	0	462	35	25	18	20	1.95
31580181--31580229	26	2.0	24	84	8	62	75	0	16	8	1.03
31581515--31581613	27	3.5	28	84	4	101	29	14	27	29	1.95
31581544--31581613	27	2.5	28	90	2	106	31	14	25	28	1.95
31581544--31581625	27	3.0	27	74	15	78	31	14	23	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31589494--31589594	28	3.5	28	83	4	94	29	13	27	28	1.95
31589523--31589594	28	2.5	29	88	6	103	31	13	26	27	1.94
31590386--31590420	18	2.1	16	89	10	52	57	0	14	28	1.38
31593139--31593284	50	2.9	50	98	0	283	30	23	6	38	1.81
31593254--31593494	47	5.1	47	91	0	392	26	29	12	31	1.92
31593254--31593494	94	2.6	94	96	0	437	26	29	12	31	1.92
31599640--31599748	42	2.6	42	82	7	132	34	24	15	24	1.95
31599640--31599752	43	2.7	43	82	8	142	35	24	15	24	1.94
31605455--31605480	11	2.4	11	100	0	52	53	19	0	26	1.45
31605936--31606012	27	2.9	27	86	3	93	25	14	22	37	1.92
31605953--31606027	27	2.8	27	89	0	105	28	13	20	38	1.90
31605979--31606345	27	13.7	27	77	12	285	31	8	19	39	1.83
31605980--31606345	80	4.6	80	81	6	366	31	9	19	39	1.83
31605979--31606298	107	3.0	106	84	5	367	32	9	19	39	1.83
31605977--31606345	134	2.7	134	81	6	399	31	9	19	39	1.84
31616176--31616363	39	4.8	39	88	0	223	23	30	21	23	1.99
31616212--31616364	39	3.9	39	92	0	243	23	31	20	24	1.98
31616181--31616363	78	2.3	79	88	1	260	22	30	22	24	1.99
31618965--31619056	28	3.3	28	90	0	139	27	34	16	21	1.95
31621450--31621681	48	4.9	48	69	11	145	29	25	18	25	1.98
31634669--31634790	43	2.9	42	77	7	129	31	22	16	29	1.96
31637830--31637959	40	3.2	40	75	12	133	23	25	28	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31648058--31648149	27	3.4	27	86	3	96	29	22	6	41	1.79
31648162--31648222	27	2.3	27	82	5	79	42	21	11	24	1.86
31648177--31648276	27	3.7	26	83	10	121	41	19	12	28	1.86
31648181--31648311	27	4.8	26	80	9	111	41	20	9	28	1.83
31648181--31648361	54	3.3	54	80	5	177	42	19	8	29	1.80
31648316--31648367	27	1.9	27	84	7	70	40	13	9	36	1.77
31648408--31648481	27	2.7	27	76	12	71	37	20	20	21	1.94
31648421--31648485	27	2.4	27	82	5	78	35	18	24	21	1.96
31650279--31650452	46	3.8	46	79	8	210	21	20	29	28	1.98
31652076--31652145	25	2.8	25	84	0	86	28	25	21	24	1.99
31652365--31652447	31	2.7	31	88	3	116	30	14	25	30	1.95
31654798--31654889	27	3.4	27	87	0	130	28	20	8	42	1.82
31654921--31655019	27	3.7	27	81	6	130	41	24	7	27	1.80
31654921--31655100	54	3.3	54	79	6	177	41	20	7	30	1.79
31654921--31655031	27	4.1	27	81	5	127	42	22	6	28	1.78
31655021--31655106	27	3.1	27	78	17	79	38	15	9	37	1.79
31656008--31656077	25	2.8	25	88	0	104	27	24	22	25	2.00
31656008--31656102	50	1.9	50	80	8	113	28	23	23	25	1.99
31656294--31656376	31	2.7	30	90	7	132	28	12	27	31	1.92
31657781--31657860	43	1.9	41	87	5	115	28	28	15	27	1.96
31658266--31658342	38	2.0	38	100	0	154	37	31	7	23	1.83
31659793--31659862	27	2.6	27	95	2	122	30	27	14	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31665163--31665222	28	2.1	29	84	3	77	33	23	20	23	1.97
31665163--31665233	29	2.5	28	86	2	88	28	23	21	26	1.99
31665178--31665277	29	3.4	29	81	0	110	33	20	20	27	1.97
31665228--31665293	29	2.3	29	86	5	89	34	16	16	31	1.92
31672485--31672589	29	3.6	29	76	8	97	25	26	17	30	1.97
31672816--31672860	8	5.6	8	84	7	56	4	20	22	53	1.63
31676275--31676339	22	3.0	22	86	0	85	30	21	10	36	1.88
31676264--31676339	22	3.5	22	81	3	82	31	25	9	34	1.87
31681120--31681189	27	2.5	28	88	2	106	31	25	14	28	1.95
31689052--31689121	27	2.5	28	88	2	106	31	25	14	28	1.95
31694575--31694628	21	2.6	21	87	0	72	29	35	3	31	1.75
31704185--31704309	40	3.1	40	83	11	175	23	22	28	26	1.99
31704185--31704336	40	3.8	39	81	10	159	23	21	26	28	1.99
31711897--31712051	40	3.9	40	83	9	217	21	23	29	25	1.99
31711890--31712043	80	1.9	80	96	2	283	22	22	28	25	1.99
31735043--31735104	31	2.0	32	87	3	90	35	20	22	20	1.96
31744790--31744853	22	2.9	22	95	0	110	32	21	17	28	1.96
31748378--31748545	40	4.2	40	81	6	196	25	21	27	25	1.99
31764322--31764349	2	14.0	2	100	0	56	0	0	50	50	1.00
31768132--31768217	31	2.8	31	92	1	147	25	26	16	31	1.96
31768536--31768565	16	1.9	15	93	6	51	50	23	0	26	1.50
31774875--31774953	29	2.7	29	86	5	106	27	32	15	24	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31778935--31779020	31	2.8	31	91	1	138	26	27	16	29	1.97
31779150--31779203	26	2.1	26	93	3	92	29	18	20	31	1.96
31782428--31782473	16	2.9	16	83	0	56	26	2	26	45	1.65
31784904--31785124	49	4.4	49	79	5	246	28	18	23	29	1.98
31792184--31792396	92	2.3	90	79	11	220	28	18	27	25	1.98
31792323--31792494	48	3.7	47	83	4	199	27	18	29	25	1.98
31792322--31792494	96	1.8	92	84	7	231	27	17	28	25	1.98
31792185--31792642	46	9.7	48	73	13	196	28	17	28	26	1.98
31792367--31792640	146	1.9	146	80	6	322	27	17	28	26	1.97
31795967--31796012	21	2.3	20	78	14	51	43	19	8	28	1.80
31796840--31796887	22	2.2	23	85	7	64	58	6	0	35	1.23
31804709--31804800	43	2.1	43	84	4	114	29	28	18	23	1.98
31805564--31805603	18	2.2	18	100	0	80	40	15	17	27	1.89
31827603--31827628	13	2.0	13	100	0	52	15	30	30	23	1.95
31837868--31837955	27	3.3	27	90	0	131	28	12	28	30	1.93
31837878--31837967	27	3.3	27	87	3	119	37	10	25	26	1.87
31844007--31844192	79	2.3	82	83	6	238	26	27	22	24	2.00
31844007--31844192	40	4.6	41	83	7	222	26	27	22	24	2.00
31852071--31852256	79	2.3	80	82	9	236	25	26	22	25	2.00
31852050--31852256	40	5.2	40	82	8	244	25	27	21	25	2.00
31858036--31858076	21	2.0	21	100	0	82	41	29	9	19	1.83
31859706--31859901	50	3.9	50	79	3	198	27	27	19	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31859718--31859905	101	1.9	99	85	2	259	27	27	19	25	1.99
31866495--31866555	30	2.0	30	83	0	77	31	22	4	40	1.75
31871802--31872009	40	5.2	39	81	12	146	23	22	26	26	2.00
31871808--31872022	80	2.7	82	83	9	248	24	22	26	26	2.00
31876555--31876739	23	8.0	23	83	4	196	24	22	23	29	1.99
31876555--31876723	46	3.7	46	82	6	225	23	23	23	29	1.99
31876559--31876739	69	2.6	69	87	3	249	24	22	22	29	1.99
31881932--31881964	15	2.1	17	88	11	52	9	15	3	72	1.21
31888482--31888962	48	10.0	48	92	2	788	34	6	28	30	1.82
31889103--31889241	37	3.8	37	96	1	253	23	19	32	24	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410