genome.fa.s13.2.7.7.80.10.50.1000.140.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13 124041150 
Parameters: 2 7 7 80 10 50 1000
Length:  124041150

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   

This is table  140  of  410  ( 49152 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42425553--42425633	40	2.0	40	100	0	162	44	12	14	28	1.82
42426001--42426107	40	2.7	40	86	0	133	21	30	24	23	1.99
42433861--42433987	50	2.6	48	81	3	139	25	29	16	29	1.97
42433860--42434077	48	4.6	47	76	9	173	24	28	16	29	1.97
42434055--42434220	46	3.6	45	75	15	151	24	29	18	27	1.98
42438608--42438828	40	5.6	40	81	7	247	24	21	26	27	1.99
42439056--42439097	22	1.9	22	85	9	59	33	9	14	42	1.78
42446764--42446984	40	5.6	41	83	9	282	24	22	26	26	2.00
42447212--42447253	22	1.9	22	85	9	59	33	9	14	42	1.78
42451622--42451664	16	2.7	16	74	0	50	9	18	18	53	1.70
42470842--42470941	40	2.5	40	85	6	123	25	28	23	24	2.00
42471682--42471707	2	13.0	2	100	0	52	50	0	0	50	1.00
42479751--42479850	40	2.5	40	82	6	114	25	28	22	25	1.99
42481898--42482068	40	4.3	39	77	10	159	28	21	26	23	1.99
42489810--42489991	40	4.5	39	76	8	161	26	21	26	24	1.99
42496821--42496970	40	3.8	40	74	14	123	26	24	27	22	1.99
42496902--42497002	39	2.5	40	82	3	114	23	24	28	22	1.99
42509855--42510038	40	4.6	39	75	6	138	26	23	27	22	2.00
42509895--42510083	80	2.4	81	77	4	186	23	24	29	22	1.99
42517751--42517934	40	4.6	39	76	9	140	26	23	27	22	2.00
42517791--42517979	80	2.4	81	78	4	195	23	23	29	23	1.99
42524229--42524289	20	3.0	20	92	0	104	34	11	21	32	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42524339--42524481	24	6.0	24	90	4	200	28	21	22	27	1.99
42524339--42524481	47	3.0	47	89	5	198	28	21	22	27	1.99
42524339--42524482	71	2.0	72	87	4	211	29	21	22	27	1.99
42524673--42524736	31	2.1	31	90	0	101	35	15	25	23	1.94
42526101--42526211	56	2.0	56	84	10	147	31	24	15	28	1.95
42529651--42529723	36	2.0	36	100	0	146	34	10	19	35	1.87
42534306--42534356	20	2.6	19	78	9	57	45	19	23	11	1.83
42541417--42541584	40	4.2	40	77	6	151	26	22	26	25	2.00
42549046--42549230	40	4.7	39	84	7	180	25	21	25	26	2.00
42549046--42549263	79	2.7	80	78	11	216	27	21	25	25	1.99
42558555--42558648	34	2.8	33	77	1	89	26	18	26	28	1.98
42559577--42559707	55	2.4	55	84	0	172	23	34	21	20	1.97
42560573--42560737	46	3.6	46	79	8	176	26	30	16	26	1.96
42566097--42566279	39	4.6	39	87	0	240	24	22	30	22	1.99
42573528--42573710	39	4.6	39	87	0	240	24	22	30	22	1.99
42575665--42575909	49	4.9	49	80	4	224	25	17	28	29	1.97
42580749--42580994	49	4.9	50	82	4	300	27	18	24	29	1.98
42580752--42580981	101	2.3	98	85	3	300	27	18	24	30	1.98
42589837--42589899	28	2.3	27	86	5	90	20	7	26	44	1.79
42589850--42589903	28	1.9	28	100	0	108	20	7	22	50	1.73
42592132--42592307	86	2.0	86	98	0	343	39	14	9	36	1.77
42593288--42593404	57	2.0	58	82	8	141	46	4	20	29	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42596692--42597062	48	7.7	48	73	12	189	25	19	30	25	1.98
42596795--42597065	96	2.8	96	83	1	328	23	19	30	25	1.98
42596683--42597062	144	2.6	142	82	4	422	25	19	30	25	1.98
42616740--42616828	25	3.6	24	71	4	63	31	19	28	21	1.97
42616789--42616869	24	3.3	24	73	11	76	37	18	24	19	1.94
42648032--42648057	13	2.0	13	100	0	52	30	38	7	23	1.83
42655720--42655776	22	2.6	21	80	5	60	42	26	12	19	1.86
42655745--42655838	38	2.5	38	89	6	145	37	29	14	18	1.91
42658417--42658448	16	2.0	16	93	0	55	34	18	0	46	1.49
42658577--42658733	78	2.0	78	97	0	296	28	24	17	29	1.98
42658731--42658812	26	3.2	26	62	25	66	31	26	15	25	1.96
42658730--42659123	101	3.9	100	79	5	393	31	25	17	25	1.97
42658730--42659124	151	2.6	151	90	0	619	31	25	17	25	1.97
42658730--42659124	50	7.9	50	80	3	443	31	25	17	25	1.97
42666335--42666456	48	2.6	47	85	2	156	25	18	31	25	1.97
42673197--42673310	23	4.8	23	68	12	63	34	21	23	21	1.97
42674890--42674926	13	2.8	13	95	0	65	10	29	43	16	1.82
42678063--42678211	80	1.9	80	81	2	183	22	30	24	22	1.99
42678104--42678211	40	2.7	38	85	8	128	21	29	25	23	1.99
42689001--42689107	40	2.7	39	85	9	137	23	26	29	20	1.99
42691721--42691786	26	2.5	27	87	2	89	30	16	24	28	1.97
42694551--42694680	40	3.2	40	82	4	165	23	28	24	23	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42694551--42694718	40	4.2	40	79	4	153	22	27	24	25	2.00
42702585--42702713	39	3.3	39	79	7	145	24	27	24	23	2.00
42702601--42702710	40	2.8	40	85	10	138	21	28	26	23	1.99
42702585--42702747	40	4.1	40	77	5	136	22	27	25	25	2.00
42704896--42705004	37	2.9	37	95	0	191	26	31	19	22	1.98
42705210--42705403	47	4.1	47	90	0	289	26	29	10	32	1.90
42705303--42705374	22	3.1	22	64	24	58	23	29	13	33	1.93
42705325--42705404	25	3.3	25	66	16	69	30	27	8	33	1.87
42710129--42710176	24	2.0	24	95	0	87	31	20	6	41	1.77
42718581--42718635	22	2.5	22	100	0	110	18	7	50	23	1.71
42719249--42719334	44	2.0	44	100	0	172	38	10	16	34	1.83
42730778--42730811	17	2.1	17	88	5	52	47	32	2	17	1.63
42732241--42732361	29	4.2	29	85	3	129	28	15	28	27	1.96
42733426--42733460	18	2.0	18	88	5	54	37	20	14	28	1.91
42745555--42745579	12	2.1	12	100	0	50	20	32	8	40	1.81
42748104--42748287	40	4.6	39	75	6	138	26	23	27	22	2.00
42748144--42748332	80	2.4	81	77	4	186	23	24	29	22	1.99
42751223--42751352	40	3.2	40	78	2	145	23	24	28	23	2.00
42751185--42751352	80	2.1	80	81	6	198	26	24	27	22	2.00
42761919--42762094	46	3.8	46	81	10	232	20	21	29	28	1.98
42761915--42762086	93	1.8	93	96	0	317	20	22	30	27	1.98
42765039--42765107	15	4.6	15	83	0	84	11	17	13	57	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42765030--42765117	30	3.0	30	81	8	99	10	17	15	56	1.66
42767482--42767657	46	3.8	46	81	10	232	20	21	29	28	1.98
42767478--42767649	93	1.8	93	96	0	317	20	22	30	27	1.98
42769004--42769049	24	1.9	24	81	0	56	45	21	10	21	1.82
42771087--42771188	24	4.4	23	75	13	102	29	15	25	29	1.96
42771087--42771196	46	2.4	46	83	8	127	29	15	26	29	1.96
42771087--42771196	23	4.8	22	73	13	71	29	15	26	29	1.96
42775383--42775565	29	6.3	29	83	3	226	25	13	28	32	1.93
42779748--42779843	29	3.3	29	92	1	158	25	13	31	30	1.94
42783715--42783815	29	3.5	29	95	0	184	29	13	29	26	1.94
42783711--42783837	58	2.2	58	84	4	168	29	14	30	25	1.95
42791717--42791791	29	2.6	29	89	4	107	26	16	32	25	1.96
42794775--42794910	47	3.0	43	75	14	123	30	27	19	22	1.98
42799637--42799736	29	3.4	30	80	5	123	19	22	15	44	1.87
42799742--42799856	30	3.8	30	84	0	131	21	21	18	38	1.94
42799742--42799856	60	1.9	60	87	0	167	21	21	18	38	1.94
42806126--42806158	16	2.0	17	88	5	50	48	6	3	42	1.43
42811310--42811425	57	2.0	57	98	0	223	35	18	18	27	1.94
42815156--42815332	66	2.8	64	73	17	152	28	16	28	26	1.97
42828465--42828619	38	4.0	38	91	5	249	26	20	31	21	1.98
42828484--42828663	38	4.6	40	87	1	145	23	22	32	22	1.98
42836799--42837011	40	5.3	40	90	3	218	25	24	20	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42836827--42837064	40	5.9	40	91	2	347	25	25	21	28	1.99
42837636--42837678	22	2.0	21	81	4	50	41	13	6	37	1.72
42837779--42837808	2	15.0	2	100	0	60	50	0	0	50	1.00
42839499--42839649	40	3.8	40	77	13	134	27	23	26	22	2.00
42839536--42839665	40	3.2	40	77	4	138	24	23	27	23	2.00
42842914--42843044	30	4.5	30	86	8	171	32	13	25	28	1.94
42842914--42843044	58	2.2	58	86	4	174	32	13	25	28	1.94
42850603--42850753	40	3.8	40	77	13	134	27	23	26	22	2.00
42850640--42850769	40	3.2	40	77	4	138	24	23	27	23	2.00
42854015--42854142	30	4.5	29	86	9	149	32	14	25	28	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410