genome.fa.s13.2.7.7.80.10.50.1000.344.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13 124041150 
Parameters: 2 7 7 80 10 50 1000
Length:  124041150

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   

This is table  344  of  410  ( 49152 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106174457--106174600	54	2.7	54	94	2	245	34	24	25	16	1.96
106174701--106174776	26	2.8	27	88	4	100	31	13	21	34	1.91
106176218--106176325	26	4.2	26	93	0	189	36	24	7	32	1.83
106181559--106181716	27	5.9	27	82	12	184	34	21	24	19	1.97
106181576--106181719	54	2.7	54	94	2	245	34	23	24	17	1.96
106181820--106181895	26	2.8	27	88	4	100	31	13	21	34	1.91
106183328--106183431	26	4.2	26	85	9	153	37	22	7	32	1.82
106183328--106183431	48	2.1	51	89	7	160	37	22	7	32	1.82
106184667--106184922	55	4.8	54	81	8	260	22	24	17	35	1.95
106184714--106184914	108	1.8	110	88	4	309	23	24	16	34	1.96
106186583--106186637	26	2.1	27	86	6	78	23	12	23	40	1.89
106188123--106188230	26	4.2	26	90	4	182	36	24	6	33	1.81
106191946--106192088	72	2.0	72	95	2	261	31	24	12	31	1.92
106198717--106198764	25	1.9	25	86	0	69	33	25	16	25	1.96
106198803--106198859	9	5.9	9	73	15	51	35	8	21	35	1.84
106198801--106198863	20	3.2	20	95	0	117	36	12	19	31	1.89
106198917--106199058	24	6.0	24	93	5	236	28	21	21	28	1.99
106198917--106199037	47	2.6	47	97	2	226	29	20	20	28	1.98
106198918--106199058	71	2.0	71	93	5	241	28	21	21	28	1.99
106199247--106199310	31	2.1	31	90	0	101	35	15	23	25	1.94
106205485--106205532	25	1.9	25	86	0	69	33	25	16	25	1.96
106205571--106205627	9	5.9	9	73	15	51	35	8	21	35	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106205569--106205631	20	3.2	20	95	0	117	36	12	19	31	1.89
106205685--106205827	24	6.0	24	86	9	195	30	20	20	27	1.98
106205685--106205827	47	3.0	49	85	9	197	30	20	20	27	1.98
106206019--106206082	31	2.1	31	90	0	101	35	15	23	25	1.94
106215107--106215152	22	2.0	24	84	16	62	54	0	6	39	1.26
106215301--106215358	30	2.0	30	82	3	73	43	12	10	34	1.76
106220880--106220989	26	4.2	26	97	0	184	36	24	5	33	1.79
106221397--106221566	37	4.6	37	82	2	191	42	22	12	22	1.87
106221413--106221566	73	2.1	73	84	3	202	42	20	12	23	1.87
106221976--106222020	24	2.0	24	86	8	67	22	20	0	57	1.40
106226244--106226281	14	2.9	13	81	11	51	18	13	10	57	1.63
106230407--106230504	49	2.0	49	100	0	196	40	24	8	26	1.83
106235475--106235512	14	2.9	13	81	11	51	18	13	10	57	1.63
106236702--106236756	18	3.1	18	86	0	83	21	21	14	41	1.89
106238589--106238670	37	2.2	37	88	0	128	15	10	29	43	1.81
106254469--106254544	40	1.9	40	97	0	143	23	13	23	39	1.90
106254946--106254998	21	2.5	21	85	14	65	47	3	1	47	1.31
106255664--106255743	30	2.6	30	75	13	74	23	7	12	56	1.61
106260103--106260151	21	2.3	23	75	13	59	55	4	6	34	1.44
106260636--106260961	160	2.0	160	91	1	528	34	14	18	32	1.91
106278230--106278297	28	2.5	28	92	2	111	20	10	25	44	1.83
106282663--106282807	55	2.6	55	75	8	152	28	27	28	15	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106283307--106283360	26	2.1	26	100	0	108	25	31	7	35	1.84
106283311--106283368	26	2.4	24	88	8	82	24	34	8	32	1.86
106283400--106283437	19	2.0	19	100	0	76	21	0	31	47	1.51
106284466--106284529	28	2.3	27	74	12	67	21	6	1	70	1.18
106291031--106291238	96	2.2	96	86	0	281	34	25	20	20	1.97
106304995--106305020	13	2.0	13	100	0	52	69	7	7	15	1.35
106306211--106306249	20	2.0	20	85	5	53	64	0	2	33	1.08
106306752--106306884	18	7.5	17	88	5	185	36	12	11	39	1.79
106306752--106306893	35	4.0	35	95	2	239	37	13	10	38	1.79
106307280--106307630	83	4.2	83	95	1	616	27	20	20	31	1.97
106307555--106308147	119	5.0	119	96	0	1080	29	19	18	33	1.95
106308139--106308318	44	4.1	44	76	8	195	27	25	16	31	1.96
106309193--106309250	21	2.8	20	80	10	64	5	12	0	82	0.82
106309192--106309247	29	1.9	29	89	7	87	5	14	0	80	0.88
106309191--106309250	14	4.8	12	75	15	50	5	13	0	81	0.84
106315019--106315078	17	3.5	17	74	21	63	65	0	1	33	1.03
106315534--106315581	22	2.2	21	78	10	51	37	16	6	39	1.74
106315560--106315691	17	7.5	18	85	6	182	37	12	11	39	1.79
106315560--106315700	35	4.0	35	93	4	230	37	12	10	39	1.78
106315560--106315691	69	1.9	70	95	3	239	37	12	11	39	1.79
106318834--106318877	2	22.0	2	90	0	70	45	0	2	52	1.13
106319585--106319645	24	2.5	24	83	0	77	32	27	14	24	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106325219--106325251	14	2.4	14	90	5	50	45	3	3	48	1.33
106328164--106328219	20	2.8	20	86	0	76	17	30	1	50	1.57
106339254--106339283	2	15.0	2	100	0	60	50	0	0	50	1.00
106340365--106340549	67	2.9	64	81	8	205	24	30	16	28	1.96
106342772--106342954	79	2.3	81	84	7	232	24	22	27	25	2.00
106342773--106342956	40	4.6	40	83	9	216	23	22	28	25	2.00
106342825--106342989	79	2.1	79	84	6	210	25	21	27	25	1.99
106344565--106344625	30	2.0	30	83	0	77	27	22	9	39	1.86
106348814--106348937	53	2.3	53	80	5	142	34	20	24	20	1.96
106350545--106350582	2	19.0	2	100	0	76	50	0	0	50	1.00
106351600--106351630	16	1.9	16	93	0	53	41	0	22	35	1.54
106356671--106356733	32	1.9	33	87	3	92	41	19	4	34	1.72
106356671--106356735	33	2.0	33	84	6	87	41	18	4	35	1.71
106356672--106356743	33	2.2	33	82	5	83	44	18	2	34	1.64
106361005--106361070	33	2.0	33	94	2	116	42	21	3	33	1.68
106361010--106361081	33	2.2	33	87	5	101	44	19	1	34	1.59
106364903--106364941	19	2.1	19	100	0	78	10	20	10	58	1.59
106370923--106370981	29	2.0	29	100	0	118	33	3	13	49	1.59
106374075--106374199	29	3.7	35	72	18	111	29	16	14	39	1.88
106376707--106376764	5	11.6	5	73	26	52	62	0	0	37	0.96
106376695--106376765	24	3.1	21	81	18	81	59	1	1	38	1.15
106376709--106376759	8	6.4	8	91	8	86	62	0	0	37	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106376709--106376765	16	3.8	15	86	13	82	63	0	0	36	0.95
106376707--106376775	21	3.1	21	80	19	79	63	1	0	34	1.03
106388699--106388768	28	2.5	28	88	9	99	27	14	27	31	1.95
106405933--106406002	28	2.5	28	88	9	99	27	14	27	31	1.95
106414650--106414693	12	3.6	12	84	6	61	15	2	4	77	1.04
106414650--106414693	6	7.2	6	84	5	52	15	2	4	77	1.04
106414656--106414707	24	2.1	25	85	3	70	19	1	3	75	1.06
106415897--106415928	16	2.0	16	100	0	64	43	31	6	18	1.75
106419500--106419617	41	3.1	41	60	28	98	32	17	28	21	1.96
106419468--106419631	71	2.3	71	100	0	328	35	17	28	18	1.94
106422306--106422340	8	4.4	8	86	13	54	62	0	0	37	0.95
106422306--106422357	13	3.6	14	78	17	54	65	1	0	32	1.04
106425433--106425457	13	1.9	13	100	0	50	48	8	8	36	1.62
106425787--106425817	14	2.2	14	94	0	53	38	12	9	38	1.77
106428397--106428445	24	2.0	24	88	8	71	55	8	0	36	1.30
106432795--106432838	23	1.9	23	85	0	61	20	4	13	61	1.50
106433117--106433202	42	2.0	42	100	0	172	30	11	11	46	1.76
106433767--106433811	23	1.9	24	90	4	74	51	11	13	24	1.73
106436950--106436996	20	2.3	20	92	0	76	57	6	10	25	1.56
106440725--106440799	27	2.7	27	72	13	73	58	2	0	38	1.12
106440761--106440795	17	2.1	17	88	0	52	62	0	0	37	0.95
106448318--106448351	17	1.9	18	88	5	52	41	2	23	32	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106457470--106457572	36	2.8	37	79	2	100	21	13	23	41	1.88
106457510--106457632	61	2.0	60	80	1	138	19	12	29	39	1.88
106458364--106458435	34	2.1	34	97	0	135	36	5	22	36	1.78
106464917--106464973	24	2.2	26	75	18	64	50	12	8	28	1.69
106464927--106464980	24	2.2	25	96	3	101	50	16	12	20	1.78
106465292--106465329	15	2.6	14	84	15	51	68	0	2	28	1.03
106465717--106465741	4	6.2	4	100	0	50	76	0	0	24	0.80
106466077--106466136	28	2.1	28	100	0	120	30	0	31	38	1.58
106466363--106466439	36	2.1	36	88	4	111	61	3	2	32	1.28
106470833--106470883	21	2.4	21	93	0	84	29	7	31	31	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410