genome.fa.s13.2.7.7.80.10.50.1000.144.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13 124041150 
Parameters: 2 7 7 80 10 50 1000
Length:  124041150

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   

This is table  144  of  410  ( 49152 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43673680--43673841	81	2.0	80	82	7	193	38	19	11	31	1.86
43674497--43674598	27	3.8	27	75	5	98	20	18	19	41	1.91
43674212--43674686	247	1.9	247	96	0	878	21	21	19	37	1.94
43674648--43674710	22	2.9	22	90	0	99	14	23	23	38	1.92
43676791--43676921	47	2.8	47	85	2	174	33	28	15	22	1.94
43681217--43681256	11	3.5	11	93	6	62	42	15	10	32	1.79
43682968--43683142	46	3.8	46	77	15	200	20	20	29	29	1.97
43682965--43683135	92	1.8	93	93	3	301	21	20	29	28	1.98
43686618--43686825	40	5.2	40	84	2	249	26	26	21	24	1.99
43693856--43694031	46	3.8	46	79	12	216	20	21	29	28	1.98
43693853--43694024	93	1.8	93	96	0	317	20	21	29	27	1.98
43709835--43710005	40	4.3	39	77	10	159	28	21	26	23	1.99
43715119--43715334	80	2.7	79	82	6	240	23	20	28	26	1.99
43715119--43715299	40	4.5	40	91	1	256	22	20	28	28	1.99
43720557--43720582	12	2.2	12	100	0	52	7	15	30	46	1.74
43720606--43720698	42	2.2	40	83	5	105	41	21	17	19	1.90
43720613--43721019	41	10.0	41	84	4	455	34	23	22	19	1.96
43720678--43721019	163	2.1	163	87	0	477	34	23	21	19	1.96
43721199--43721274	36	2.0	39	85	7	104	30	5	23	40	1.77
43724953--43725337	133	2.9	133	98	0	743	20	9	18	51	1.74
43727783--43727953	93	1.8	93	94	0	306	27	29	22	21	1.99
43727776--43727951	46	3.8	46	79	10	214	28	29	21	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43727827--43727970	46	3.1	44	73	15	130	29	27	21	21	1.99
43730063--43730102	21	1.9	21	89	0	62	27	10	12	50	1.72
43736249--43736289	21	2.0	21	100	0	82	24	19	56	0	1.42
43736613--43736728	41	2.9	41	93	1	198	14	24	28	32	1.94
43742303--43742482	40	4.5	40	86	5	206	26	21	25	27	1.99
43742301--43742482	80	2.3	81	82	9	230	25	20	26	26	1.99
43742301--43742501	40	5.0	40	83	8	119	26	20	26	26	1.99
43742331--43742515	80	2.3	80	78	11	193	28	21	24	25	1.99
43746498--43746787	38	7.6	38	89	1	429	31	24	22	21	1.99
43747066--43747151	43	2.0	44	90	2	138	24	30	20	24	1.99
43753642--43753687	22	2.0	24	83	12	60	60	2	28	8	1.38
43757559--43757655	24	4.0	24	87	0	140	35	2	36	26	1.69
43759063--43759173	27	4.1	27	78	5	100	18	21	19	40	1.91
43759063--43759173	54	2.1	53	83	5	134	18	21	19	40	1.91
43765132--43765299	46	3.7	45	82	4	196	25	21	27	25	1.99
43765133--43765302	93	1.9	90	85	6	234	25	21	27	24	1.99
43770073--43770335	40	6.6	40	88	0	366	23	18	27	30	1.98
43770073--43770335	120	2.2	120	90	1	411	23	18	27	30	1.98
43771461--43771497	17	2.2	17	100	0	74	48	16	5	29	1.68
43773076--43773124	24	2.0	24	100	0	98	24	8	12	55	1.64
43778335--43778401	27	2.5	27	85	4	91	35	13	23	26	1.92
43779897--43779998	27	3.8	27	92	0	159	41	18	13	26	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43779868--43779998	54	2.4	54	87	1	183	40	19	14	25	1.89
43779868--43780009	27	5.3	25	83	6	122	39	18	16	26	1.91
43787061--43787158	28	3.5	28	84	4	108	29	16	24	29	1.96
43794309--43794487	40	4.6	40	91	5	287	26	26	22	24	2.00
43794309--43794487	78	2.3	79	91	4	283	26	26	22	24	2.00
43802297--43802477	40	4.6	40	92	2	278	26	25	23	23	2.00
43811915--43811946	15	2.0	17	88	11	50	25	0	31	43	1.55
43814039--43814076	20	1.9	20	94	0	67	68	0	7	23	1.16
43814992--43815076	38	2.2	39	82	4	100	17	17	23	41	1.90
43816166--43816269	53	2.0	53	92	0	172	31	6	19	42	1.77
43816175--43816259	26	3.2	26	64	9	64	30	7	18	43	1.77
43818446--43818489	13	3.2	13	75	12	52	52	15	9	22	1.71
43818433--43818489	28	2.0	28	96	0	105	50	15	10	22	1.74
43818433--43818479	15	3.3	15	73	11	53	51	17	10	21	1.75
43819617--43819665	21	2.3	21	82	0	62	38	8	20	32	1.82
43819920--43819973	27	2.0	27	85	0	72	38	7	14	38	1.75
43822009--43822078	27	2.5	28	95	2	124	28	14	27	30	1.95
43822009--43822090	27	3.0	27	85	8	78	29	15	24	30	1.96
43830038--43830107	27	2.5	28	95	2	124	28	14	27	30	1.95
43830038--43830119	27	3.0	27	85	8	78	29	15	24	30	1.96
43833032--43833101	27	2.5	28	95	2	124	28	14	27	30	1.95
43833032--43833113	27	3.0	27	85	8	78	29	15	24	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43845720--43845941	48	4.8	46	78	9	193	24	29	17	28	1.97
43845722--43845942	92	2.4	93	82	7	243	24	29	17	28	1.97
43845626--43845941	140	2.2	143	80	8	333	25	29	17	27	1.97
43846757--43846835	31	2.5	31	93	0	140	25	25	18	30	1.98
43846859--43846950	42	2.2	42	90	0	139	34	20	14	30	1.92
43847083--43847218	26	5.3	26	88	1	188	27	22	21	28	1.99
43847083--43847218	52	2.7	51	93	3	222	27	22	21	28	1.99
43847268--43847334	20	3.3	20	85	4	91	31	16	10	41	1.82
43847370--43847417	25	1.9	25	82	0	60	27	14	20	37	1.92
43848042--43848143	27	3.8	26	73	12	80	22	19	19	38	1.94
43848157--43848323	27	6.2	26	70	12	88	29	10	19	40	1.86
43848145--43848270	54	2.3	54	86	0	162	30	8	18	42	1.80
43848139--43848290	81	1.9	81	79	8	175	28	7	22	41	1.81
43848195--43848330	27	5.0	27	73	8	98	27	11	22	38	1.89
43848322--43848577	27	9.4	27	79	5	167	37	7	21	33	1.81
43848437--43848509	28	2.7	27	91	2	110	30	6	20	42	1.78
43848502--43848596	27	3.5	27	86	0	109	40	6	21	32	1.78
43848474--43848616	54	2.6	54	79	0	142	35	6	22	34	1.81
43855121--43855295	46	3.8	45	78	7	181	27	28	21	23	1.99
43855129--43855300	93	1.8	93	89	0	272	26	28	21	23	1.99
43855172--43855315	46	3.1	46	71	14	125	28	28	20	22	1.98
43857084--43857119	6	6.0	6	100	0	72	0	33	16	50	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43860488--43860654	40	4.2	40	82	2	185	25	27	21	25	1.99
43860488--43860654	80	2.1	79	83	7	205	25	27	21	25	1.99
43861479--43861524	17	2.5	19	74	22	53	34	23	17	23	1.96
43868492--43868658	40	4.2	40	82	2	185	25	27	21	25	1.99
43868492--43868658	80	2.1	79	83	7	205	25	27	21	25	1.99
43869483--43869528	17	2.5	19	74	22	53	34	23	17	23	1.96
43870979--43871149	94	1.8	92	81	9	213	23	25	19	32	1.98
43872341--43872453	6	18.3	6	71	21	83	46	15	21	17	1.84
43872362--43872453	25	3.7	25	95	0	166	45	15	21	17	1.85
43872574--43872677	54	1.9	53	82	1	127	38	18	23	20	1.93
43872574--43872677	27	3.9	27	81	5	111	38	18	23	20	1.93
43873244--43873477	27	8.7	27	84	2	274	26	17	18	37	1.93
43873233--43873477	54	4.6	54	87	2	341	25	17	19	36	1.94
43873244--43873469	81	2.8	80	85	4	303	26	17	18	38	1.93
43873474--43873534	7	8.6	7	92	3	104	13	0	44	42	1.43
43873474--43873534	22	2.8	22	95	2	106	13	0	44	42	1.43
43874044--43874090	15	3.1	15	87	0	76	17	17	17	48	1.81
43876829--43877052	47	4.8	48	73	15	177	30	16	23	30	1.96
43876836--43877004	47	3.5	47	81	8	185	29	15	23	31	1.96
43879370--43879401	14	2.4	13	90	10	55	62	12	6	18	1.50
43886220--43886244	8	3.1	8	100	0	50	52	0	24	24	1.48
43889325--43889390	32	2.1	32	100	0	132	34	15	15	34	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43892003--43892216	49	4.4	49	93	0	347	32	8	28	30	1.87
43895489--43895620	29	4.6	29	86	0	165	25	15	34	25	1.95
43903502--43903633	29	4.6	29	86	0	165	25	15	34	25	1.95
43907008--43907119	42	2.7	42	82	0	143	31	15	26	26	1.96
43912670--43912837	40	4.2	40	79	6	162	23	26	22	27	2.00
43912686--43912835	80	1.9	80	83	8	198	22	26	23	27	2.00
43920410--43920577	40	4.2	40	79	6	162	23	26	22	27	2.00
43920426--43920575	80	1.9	80	83	8	198	22	26	23	27	2.00
43925538--43925691	42	3.7	42	78	1	157	31	15	25	27	1.96
43933999--43934103	56	1.9	56	84	5	142	35	20	24	20	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410