Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13 124041150 
Parameters: 2 7 7 80 10 50 1000
Length:  124041150

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   

This is table  359  of  410  ( 49152 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
110671622--110671669
10
4.3
12
72
17
50
56
0
0
43
0.99
110677134--110677166
12
2.8
12
95
0
57
51
18
9
21
1.73
110679029--110679070
21
2.0
21
86
9
59
45
19
9
26
1.80
110680872--110680921
24
2.1
24
85
7
66
26
6
0
68
1.13
110681698--110681725
12
2.3
12
100
0
56
60
0
0
39
0.97
110691287--110691331
23
1.9
23
86
13
65
57
0
2
40
1.11
110692645--110692678
2
17.0
2
100
0
68
50
0
0
50
1.00
110697013--110697083
19
3.5
19
71
14
61
57
0
5
36
1.22
110705640--110705678
18
2.2
18
85
0
51
46
2
2
48
1.29
110706718--110706794
16
4.8
16
75
9
77
24
1
20
53
1.53
110707276--110707332
27
2.1
27
96
0
105
45
5
0
49
1.24
110710611--110710653
18
2.4
18
80
0
50
46
9
23
20
1.79
110711234--110711269
7
5.1
7
100
0
72
58
13
0
27
1.36
110712184--110712292
48
2.2
49
80
7
116
54
6
7
32
1.54
110712203--110712337
48
2.8
47
81
6
139
52
5
9
32
1.56
110713608--110713668
9
6.9
9
75
20
58
67
3
1
27
1.16
110713601--110713668
18
3.9
17
83
11
84
69
4
1
25
1.16
110713641--110713702
10
6.0
10
74
10
54
66
3
1
29
1.17
110719023--110719055
2
16.5
2
93
0
57
0
45
0
54
0.99
110722536--110722569
17
2.0
17
88
0
50
70
5
11
11
1.32
110725840--110725882
2
21.5
2
100
0
86
51
0
48
0
1.00
110728241--110728521
140
2.0
140
92
0
463
30
19
13
36
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
110732094--110732146
17
3.1
17
76
23
58
28
0
0
71
0.86
110733443--110733572
67
1.9
67
85
3
181
45
15
13
25
1.83
110734389--110734556
42
4.0
42
87
1
203
30
25
12
31
1.92
110734498--110734603
49
2.2
48
86
3
140
31
27
13
28
1.94
110734703--110734820
31
3.8
31
88
4
175
24
27
19
27
1.99
110734796--110734971
49
3.5
50
90
3
257
26
23
14
35
1.94
110739668--110739835
42
4.0
42
88
1
212
30
25
13
30
1.93
110739777--110739882
49
2.2
48
86
3
140
31
27
13
28
1.94
110739982--110740130
31
4.8
31
91
3
228
24
28
20
27
1.99
110740106--110740282
50
3.5
50
93
2
284
25
23
15
35
1.94
110742455--110742498
23
1.9
23
81
9
54
40
9
9
40
1.68
110748111--110748159
17
2.9
16
78
6
53
73
2
10
14
1.18
110749421--110749469
24
2.0
24
96
0
89
48
16
10
24
1.76
110749782--110749824
19
2.2
20
87
4
61
79
2
6
11
1.02
110753761--110753802
6
6.8
6
91
2
66
80
2
0
16
0.81
110753858--110754074
108
2.0
108
89
0
335
39
14
17
29
1.88
110756512--110756622
42
2.6
42
87
2
152
31
25
12
30
1.93
110756564--110756669
49
2.2
48
87
3
149
30
27
14
28
1.95
110756769--110756886
31
3.8
31
86
4
166
24
27
19
28
1.99
110756862--110757038
50
3.5
50
92
2
275
25
23
14
35
1.93
110765559--110765593
17
2.1
17
100
0
70
28
17
17
37
1.92
110768275--110768333
9
6.6
9
82
7
75
44
20
8
27
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
110769126--110769165
11
3.6
11
79
0
53
47
0
35
17
1.48
110775604--110775646
2
21.5
2
100
0
86
51
0
0
48
1.00
110781268--110781316
13
3.8
12
79
12
53
4
18
0
77
0.92
110783649--110783683
2
17.5
2
93
0
61
51
2
0
45
1.16
110789940--110790139
49
4.1
49
95
0
346
34
11
26
28
1.90
110790213--110790294
37
2.2
36
93
4
137
20
21
34
23
1.97
110791724--110791789
25
3.0
21
75
16
78
28
1
15
54
1.50
110793050--110793121
28
2.6
28
78
8
92
58
5
5
30
1.44
110793193--110793257
19
3.4
19
95
2
112
47
20
7
24
1.76
110795459--110795540
3
26.3
3
92
7
137
67
0
0
32
0.91
110795832--110795980
7
21.4
7
66
24
50
57
0
6
36
1.24
110795912--110795976
21
3.1
21
78
8
62
61
0
4
33
1.16
110795996--110796026
12
2.5
13
89
10
55
64
0
0
35
0.94
110796001--110796031
16
2.0
15
93
6
53
64
0
0
35
0.94
110796336--110796424
17
4.9
18
86
13
130
35
13
11
39
1.80
110796327--110796409
17
4.5
19
65
34
56
34
14
9
40
1.79
110796336--110796424
35
2.5
36
94
3
162
35
13
11
39
1.80
110796820--110797316
83
6.0
83
96
0
877
26
20
20
32
1.97
110797252--110797830
235
2.4
237
92
0
955
30
18
17
33
1.94
110797240--110797830
119
5.0
119
91
1
954
30
18
17
33
1.94
110797822--110798001
44
4.1
44
75
11
188
28
25
16
29
1.97
110798880--110798923
21
2.3
18
88
11
61
2
9
0
88
0.59
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
110798878--110798923
14
3.7
12
83
16
58
2
10
0
86
0.64
110798886--110798923
12
3.5
11
86
10
51
2
7
0
89
0.57
110804164--110804197
2
17.5
2
93
6
61
52
0
0
47
1.00
110804568--110804632
21
3.1
21
78
8
62
61
0
4
33
1.16
110804570--110804630
28
2.2
29
77
19
67
59
0
4
36
1.19
110804652--110804682
12
2.5
13
89
10
55
64
0
0
35
0.94
110804657--110804687
16
2.0
15
93
6
53
64
0
0
35
0.94
110804955--110805036
22
4.1
20
74
13
62
42
15
6
35
1.72
110804991--110805089
17
5.6
17
83
7
126
37
13
10
39
1.78
110804991--110805097
35
3.0
35
91
4
169
37
14
9
39
1.78
110806203--110806418
39
5.5
39
91
1
351
28
27
23
20
1.99
110806411--110806542
39
3.4
39
93
2
212
25
25
19
29
1.99
110806205--110806535
78
4.2
80
85
4
340
27
26
22
23
1.99
110806201--110806467
117
2.3
119
85
3
371
26
27
22
23
1.99
110807205--110807241
2
18.5
2
100
0
74
48
0
0
51
1.00
110809915--110809958
19
2.4
19
81
7
56
22
0
2
75
0.92
110810234--110810280
18
2.7
18
87
9
62
4
14
0
80
0.85
110810228--110810280
22
2.4
23
87
6
74
5
15
0
79
0.91
110814958--110815117
68
2.4
68
93
0
266
41
0
15
42
1.52
110814951--110815131
34
5.4
33
79
6
193
40
1
13
44
1.51
110820666--110820722
25
2.3
23
81
18
71
54
1
0
43
1.10
110822797--110822840
21
2.1
21
82
0
52
40
2
25
31
1.68
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
110831946--110831985
21
2.0
20
90
5
62
35
0
22
42
1.54
110831951--110831993
21
2.1
21
83
12
54
32
2
20
44
1.65
110844713--110844812
13
8.6
13
79
17
98
37
48
0
15
1.45
110844722--110844746
9
2.8
9
100
0
50
36
52
0
12
1.39
110845084--110845161
3
25.3
3
73
19
56
30
3
1
64
1.20
110845069--110845165
30
3.1
34
66
24
54
28
3
1
67
1.13
110845236--110845292
3
18.0
3
85
10
62
31
0
5
63
1.17
110845524--110845569
18
2.5
19
82
13
60
39
4
2
54
1.32
110845366--110845586
122
1.8
122
79
5
259
31
3
5
59
1.37
110848002--110848047
19
2.5
19
82
13
60
28
21
6
43
1.77
110851651--110851754
53
2.0
52
84
1
136
20
15
11
52
1.73
110852652--110853127
205
2.4
195
88
3
682
30
19
21
28
1.97
110853142--110853812
88
7.6
87
79
8
587
30
18
25
25
1.98
110853206--110853790
132
4.4
132
95
0
1028
29
18
25
26
1.98
110854076--110854206
13
10.6
13
73
17
111
35
50
0
13
1.42
110854085--110854118
9
3.8
9
100
0
68
35
52
0
11
1.38
110854076--110854149
18
4.2
18
70
6
53
35
48
0
16
1.46
110854125--110854206
35
2.3
35
91
8
148
36
51
0
12
1.40
110854465--110854692
3
72.3
3
71
17
94
29
7
3
60
1.38
110856765--110856939
45
3.8
46
79
13
216
20
20
29
29
1.98
110864328--110864503
46
3.8
46
79
12
216
20
21
29
28
1.98
110864325--110864496
93
1.8
93
96
0
317
20
21
29
27
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
110867431--110867584
40
3.8
40
82
12
179
26
27
20
25
1.99
110874017--110874191
45
3.8
46
79
13
216
20
20
29
29
1.98
110881567--110881742
46
3.8
46
79
12
216
20
21
29
28
1.98
110881564--110881735
93
1.8
93
96
0
317
20
21
29
27
1.98
110891116--110891151
3
12.0
3
100
0
72
66
0
0
33
0.92
110899233--110899327
39
2.5
37
81
6
102
27
24
23
25
2.00
110899829--110899862
17
1.9
18
88
5
52
35
23
0
41
1.55
110901931--110901978
25
1.9
25
82
0
60
33
22
16
27
1.96
110902022--110902080
20
3.0
20
92
0
91
33
8
22
35
1.84
110902021--110902073
9
5.4
9
77
16
52
32
5
22
39
1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410