genome.fa.s13.2.7.7.80.10.50.1000.138.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13 124041150 
Parameters: 2 7 7 80 10 50 1000
Length:  124041150

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   

This is table  138  of  410  ( 49152 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41755168--41755418	54	4.6	54	91	0	403	29	22	8	39	1.83
41755404--41755564	27	6.0	27	83	0	214	39	19	8	32	1.81
41755411--41755561	54	2.8	54	92	0	248	40	21	7	31	1.80
41756198--41756266	28	2.5	28	95	2	122	43	27	10	18	1.82
41759250--41759500	27	9.3	27	86	6	330	29	23	8	39	1.84
41759250--41759500	54	4.6	54	92	0	403	29	23	8	39	1.84
41759486--41759646	27	6.0	27	83	0	214	39	19	8	32	1.81
41759493--41759643	54	2.8	54	92	0	248	40	21	7	31	1.80
41760280--41760348	28	2.5	28	92	2	113	44	27	8	18	1.79
41761514--41761599	26	3.3	26	80	6	75	41	19	13	24	1.88
41761530--41761721	27	7.1	27	78	5	185	40	18	13	28	1.87
41761533--41761748	81	2.7	81	81	2	256	39	18	13	29	1.88
41764264--41764307	22	2.0	22	90	0	70	56	4	0	38	1.20
41764264--41764306	10	4.1	10	82	11	50	58	4	0	37	1.19
41768679--41768754	23	3.2	25	62	24	63	28	13	34	23	1.92
41768652--41768884	47	5.0	47	91	0	376	31	11	30	27	1.92
41769047--41769191	37	3.9	37	92	0	236	22	18	33	25	1.97
41772152--41772269	27	4.4	27	86	2	157	34	18	21	25	1.96
41772164--41772270	53	2.0	54	90	1	171	35	20	20	23	1.96
41772764--41772831	33	2.1	33	86	5	93	32	26	14	26	1.95
41775224--41775395	27	6.4	27	82	1	202	37	18	19	25	1.94
41775224--41775396	54	3.2	54	88	0	249	37	18	19	24	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41777823--41778006	40	4.6	39	79	6	156	27	22	26	23	2.00
41779455--41779506	27	1.9	27	84	0	68	21	25	21	32	1.98
41785447--41785479	17	1.9	17	100	0	66	54	6	12	27	1.60
41794872--41794997	47	2.7	47	86	0	171	34	13	26	26	1.93
41795200--41795308	37	2.9	37	88	0	155	23	19	29	27	1.98
41798777--41798849	29	2.5	29	84	0	92	28	17	26	27	1.98
41803463--41803646	96	1.9	96	84	4	246	27	17	28	26	1.98
41803463--41803649	48	3.9	47	83	4	187	26	17	29	26	1.97
41803463--41803682	96	2.3	94	81	12	234	27	17	29	26	1.97
41803516--41803682	48	3.5	47	76	13	155	27	18	29	24	1.98
41817846--41817910	28	2.3	28	94	0	112	33	27	7	30	1.85
41818028--41818105	27	2.8	28	82	9	97	23	24	20	32	1.98
41818016--41818130	55	2.1	56	82	11	139	20	23	20	34	1.96
41822479--41822534	6	9.2	6	94	2	76	16	23	0	60	1.35
41838267--41838324	6	9.7	6	100	0	116	48	0	51	0	1.00
41846334--41846513	40	4.5	39	77	10	161	27	22	26	23	1.99
41850856--41850967	29	3.9	29	76	12	106	25	33	15	25	1.95
41850885--41850967	29	2.9	29	87	1	114	26	32	13	27	1.93
41855551--41855631	28	2.9	28	83	1	101	37	18	22	22	1.95
41855736--41855794	25	2.3	26	82	2	75	28	11	25	33	1.91
41861424--41861463	20	2.0	21	85	5	55	15	32	2	50	1.57
41861961--41862068	55	2.0	53	87	3	153	44	23	14	17	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41861963--41862148	27	6.9	27	87	1	176	40	19	16	22	1.91
41864140--41864198	30	2.0	30	86	6	84	30	22	5	42	1.75
41866683--41866755	15	4.9	15	80	6	85	56	16	16	10	1.67
41866674--41866755	30	2.7	30	74	11	85	54	15	17	12	1.70
41868310--41868610	27	11.2	27	83	4	340	27	21	9	40	1.84
41868313--41868610	81	3.7	81	83	4	377	27	21	9	41	1.83
41868615--41868809	27	7.2	27	80	5	207	36	18	18	26	1.94
41868615--41868810	54	3.6	54	84	4	252	36	18	18	26	1.94
41868623--41868808	81	2.3	81	89	0	273	36	18	19	25	1.94
41869009--41869088	27	3.0	26	87	3	97	21	22	20	36	1.95
41869188--41869237	22	2.3	22	78	0	55	22	26	20	32	1.98
41869396--41869474	27	3.0	27	83	5	81	17	24	20	37	1.93
41869593--41869773	6	29.8	6	75	16	160	19	17	14	48	1.81
41869624--41869773	79	1.9	79	97	0	282	20	16	14	49	1.80
41869593--41869773	85	2.1	85	86	6	251	19	17	14	48	1.81
41871699--41871908	46	4.5	44	78	12	167	28	18	28	24	1.98
41871646--41872061	47	8.8	47	72	12	214	27	18	28	24	1.98
41871888--41872009	49	2.5	50	76	6	124	27	18	27	25	1.98
41881998--41882203	55	3.8	54	80	6	229	22	25	16	35	1.95
41885155--41885215	30	2.0	30	87	6	88	36	8	26	29	1.85
41885636--41885812	47	3.8	47	76	12	193	22	20	27	29	1.98
41892197--41892227	16	1.9	16	93	0	53	35	22	0	41	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41892194--41892233	20	2.0	20	85	0	53	37	22	0	40	1.54
41892306--41892350	23	1.9	24	90	4	74	22	24	11	42	1.86
41892419--41892673	55	4.9	50	75	10	165	22	25	16	35	1.95
41892464--41892673	55	3.9	54	78	7	212	23	24	16	34	1.95
41892464--41892666	108	1.9	110	87	4	304	24	24	17	33	1.96
41909791--41909897	42	2.5	42	96	0	196	28	14	33	22	1.94
41909905--41909974	27	2.5	28	86	2	97	27	14	25	32	1.94
41917022--41917128	42	2.5	42	93	0	187	28	14	33	23	1.93
41917136--41917205	27	2.5	28	86	2	97	27	14	25	32	1.94
41919344--41919484	70	2.0	70	91	0	228	29	30	9	31	1.88
41922621--41922700	30	2.7	30	78	1	81	25	25	10	40	1.86
41922991--41923035	22	2.0	22	100	0	90	37	13	8	40	1.76
41928742--41928772	12	2.5	13	94	5	55	16	22	0	61	1.34
41928759--41928856	45	2.2	44	82	7	110	29	18	8	43	1.79
41929135--41929323	103	1.8	104	88	3	292	41	9	12	36	1.75
41931822--41931851	10	3.0	10	95	0	51	13	10	6	70	1.34
41937005--41937035	16	2.0	15	93	6	53	58	0	0	41	0.98
41938228--41938422	54	3.6	54	76	4	169	21	23	17	37	1.94
41942715--41942897	39	4.6	39	87	0	240	22	30	22	24	1.99
41947484--41947654	40	4.3	39	77	10	159	28	21	26	23	1.99
41955294--41955325	16	2.1	16	94	5	57	43	3	18	34	1.66
41955322--41955464	40	3.5	40	80	4	119	28	22	25	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41955361--41955490	40	3.2	39	82	8	145	24	22	27	25	2.00
41958811--41958976	40	4.2	40	80	3	167	24	26	22	26	2.00
41958827--41958936	39	2.8	40	84	8	136	22	29	24	23	1.99
41966799--41966966	40	4.2	40	79	6	162	23	26	22	27	2.00
41966815--41966964	80	1.9	80	83	8	198	22	26	23	27	2.00
41970618--41970737	45	2.7	45	83	7	133	23	30	23	23	1.99
41970745--41970913	38	4.4	38	88	3	250	33	23	20	23	1.97
41972289--41972473	79	2.3	81	83	7	227	23	27	24	24	2.00
41972282--41972473	40	4.8	39	76	8	163	23	28	23	24	2.00
41974153--41974297	38	3.8	38	88	1	218	29	24	24	21	1.99
41974570--41974663	43	2.2	44	84	1	127	27	28	18	25	1.98
41983008--41983118	38	2.9	38	81	2	116	33	29	18	18	1.95
41986518--41986550	7	4.7	7	100	0	66	42	45	12	0	1.41
41990186--41990360	42	4.2	42	76	1	172	28	14	24	32	1.95
41990203--41990360	84	1.9	84	86	0	226	29	15	24	31	1.95
41996373--41996468	26	3.8	26	91	2	135	26	25	22	26	2.00
41996372--41996481	26	4.4	25	87	6	111	28	23	22	25	2.00
41996688--41996766	31	2.5	31	89	0	122	34	16	25	24	1.95
42001844--42001950	43	2.5	42	79	8	101	21	15	28	34	1.94
42009492--42009644	40	3.8	40	77	9	134	23	22	28	25	2.00
42020469--42020493	13	1.9	13	100	0	50	20	40	32	8	1.81
42022211--42022459	43	5.9	42	79	5	241	22	14	27	35	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42022211--42022459	85	2.9	85	87	4	326	22	14	27	35	1.93
42022212--42022445	128	1.8	128	79	5	276	22	15	27	34	1.94
42024090--42024772	339	2.0	339	97	0	1294	31	19	12	36	1.88
42028785--42028832	21	2.3	20	75	3	51	33	4	16	45	1.67
42033824--42034005	40	4.6	40	89	4	262	30	19	24	25	1.98
42033808--42034033	40	5.7	40	86	4	246	27	21	25	25	1.99
42036750--42036889	27	5.2	27	89	0	190	35	14	21	29	1.93
42037406--42037467	22	2.8	22	76	13	65	19	22	22	35	1.96
42037705--42037798	6	15.3	6	68	16	59	20	17	12	50	1.78
42037708--42037772	25	2.6	25	85	0	85	20	20	13	46	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410