genome.fa.s13.2.7.7.80.10.50.1000.143.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13 124041150 
Parameters: 2 7 7 80 10 50 1000
Length:  124041150

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   

This is table  143  of  410  ( 49152 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43352818--43353025	67	3.2	65	78	10	185	21	28	18	31	1.97
43353228--43353259	12	2.7	12	100	0	64	46	25	0	28	1.53
43359973--43360029	21	2.7	20	76	10	60	75	3	3	17	1.09
43362827--43363020	47	4.1	47	86	0	253	33	9	29	26	1.89
43363224--43363368	37	3.9	37	96	1	265	22	18	31	27	1.97
43369794--43369830	14	2.8	13	88	11	58	59	10	8	21	1.56
43387923--43388037	27	4.3	27	90	0	185	26	11	23	38	1.89
43388027--43388262	27	8.7	27	85	3	305	40	7	22	29	1.81
43387923--43388061	54	2.6	54	84	2	145	29	10	23	36	1.88
43388027--43388291	81	3.3	81	84	3	327	38	7	23	30	1.82
43388476--43388528	17	3.5	17	67	32	57	13	33	35	16	1.88
43388478--43388538	27	2.3	27	97	0	113	13	36	36	14	1.85
43391943--43392001	27	2.2	27	81	6	66	27	18	27	27	1.98
43391953--43392124	27	6.4	27	85	5	138	25	13	23	38	1.91
43392115--43392348	27	8.7	27	87	3	301	39	8	23	29	1.84
43391969--43392125	54	2.9	54	88	1	226	24	12	24	38	1.90
43391996--43392149	81	1.9	81	83	2	202	27	10	25	36	1.89
43392115--43392379	81	3.3	81	84	4	320	37	8	24	29	1.85
43397136--43397246	42	2.6	42	81	2	125	29	26	16	27	1.97
43399080--43399113	13	2.7	13	95	4	61	61	17	5	14	1.52
43401980--43402134	73	2.1	73	97	1	294	32	5	21	40	1.75
43410367--43410535	40	4.3	38	88	8	184	27	27	20	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43410397--43410590	40	4.8	40	87	3	241	27	26	20	25	1.99
43410397--43410590	80	2.4	80	87	5	275	27	26	20	25	1.99
43415743--43415818	23	3.3	23	77	15	86	26	22	17	34	1.96
43427837--43427961	40	3.1	40	84	8	141	22	24	28	24	1.99
43429249--43429424	46	3.8	46	78	15	209	20	20	29	29	1.98
43429246--43429415	93	1.8	93	96	0	313	21	20	29	28	1.98
43430726--43430812	40	2.2	40	85	2	113	25	21	27	25	2.00
43438668--43438914	40	6.2	40	80	12	253	23	23	28	25	2.00
43438668--43438891	119	1.9	120	86	2	326	22	23	28	25	1.99
43438708--43438914	79	2.6	79	86	3	283	23	23	28	25	2.00
43444810--43445161	40	8.8	40	91	1	505	25	27	22	25	2.00
43444810--43445161	120	2.9	119	91	0	560	25	27	22	25	2.00
43447100--43447251	40	3.8	40	84	3	180	27	22	26	23	1.99
43447096--43447268	40	4.4	38	76	10	152	28	21	27	23	1.99
43449727--43449835	37	2.9	37	93	2	175	25	31	19	23	1.98
43449981--43450165	48	3.8	48	91	4	300	30	26	6	36	1.82
43449960--43450170	98	2.1	99	87	7	313	30	27	7	34	1.84
43450135--43450328	47	4.1	47	89	0	271	25	29	11	33	1.91
43450228--43450299	22	3.1	22	64	24	58	23	29	13	33	1.93
43450088--43450328	94	2.6	94	83	4	272	26	29	10	33	1.90
43453143--43453305	40	4.1	39	79	10	177	25	21	27	25	1.99
43455621--43455788	40	4.2	40	79	4	151	24	27	23	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43457019--43457065	20	2.3	20	88	3	67	0	14	2	82	0.75
43457028--43457057	14	2.2	14	94	5	53	0	10	0	90	0.47
43457027--43457059	17	1.9	17	100	0	66	0	12	0	87	0.53
43457027--43457065	16	2.4	16	91	4	60	0	12	2	84	0.72
43459571--43459762	79	2.4	81	82	6	223	24	22	28	24	2.00
43459572--43459762	40	4.8	40	80	8	158	24	23	28	24	2.00
43459571--43459788	79	2.7	77	79	8	188	24	22	27	25	2.00
43462510--43462582	37	2.0	37	91	0	119	27	31	17	23	1.97
43462660--43463172	49	10.4	49	95	0	855	30	32	7	29	1.86
43470826--43470895	36	2.0	36	91	2	115	15	11	30	42	1.82
43472621--43472733	53	2.1	53	98	1	217	26	10	24	38	1.88
43472651--43472733	26	3.2	26	64	20	64	27	9	25	37	1.87
43476393--43476538	40	3.7	40	84	5	190	26	21	26	26	1.99
43476388--43476571	79	2.3	78	78	11	194	27	20	25	26	1.99
43484520--43484715	79	2.5	80	82	7	245	24	20	28	26	1.99
43484522--43484715	40	4.8	40	84	5	241	24	21	28	26	1.99
43484524--43484741	79	2.7	78	78	12	228	25	21	27	26	1.99
43486535--43486604	27	2.5	28	88	2	106	31	25	14	28	1.95
43494609--43494678	27	2.5	28	88	2	106	31	25	14	28	1.95
43496190--43496387	40	4.9	40	91	1	299	21	28	23	25	1.99
43504313--43504522	40	5.2	40	88	2	305	21	28	24	25	1.99
43512098--43512181	37	2.3	37	91	0	132	29	21	26	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43515574--43515623	26	1.9	25	84	15	66	40	4	24	32	1.73
43518342--43518461	37	3.2	37	82	4	143	31	19	23	25	1.98
43518445--43518573	48	2.7	48	89	2	179	28	17	25	28	1.97
43518499--43518595	42	2.2	45	83	14	121	27	13	28	29	1.94
43524057--43524184	35	3.6	35	88	1	166	42	33	10	14	1.79
43531906--43532050	40	3.6	40	86	4	202	22	26	25	25	2.00
43539866--43540044	39	4.6	40	82	4	195	23	26	24	25	2.00
43543256--43543385	29	4.5	29	93	0	226	29	14	30	26	1.95
43543256--43543385	58	2.3	58	98	1	253	29	14	30	26	1.95
43543256--43543443	87	2.2	86	80	4	209	26	15	31	25	1.96
43549570--43549607	18	2.1	18	90	0	58	81	5	13	0	0.85
43550846--43550952	40	2.7	40	82	0	124	28	22	25	23	1.99
43550887--43551013	40	3.2	39	83	8	141	22	24	29	23	1.99
43554341--43554470	29	4.5	29	93	0	226	29	14	30	26	1.95
43554341--43554470	58	2.3	58	98	1	253	29	14	30	26	1.95
43554341--43554528	87	2.2	86	80	4	209	26	15	31	25	1.96
43561609--43561700	48	1.9	48	88	0	139	29	27	18	25	1.98
43565627--43565819	40	4.8	40	80	5	192	26	24	26	22	2.00
43565627--43565845	80	2.7	80	80	6	230	26	24	26	22	2.00
43573701--43573893	40	4.8	40	80	5	192	26	24	26	22	2.00
43573701--43573893	80	2.4	80	83	4	228	26	24	26	22	2.00
43586656--43586818	86	1.9	85	81	6	195	33	24	16	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43586656--43586825	43	4.0	43	73	11	150	32	24	16	25	1.96
43588513--43588564	26	2.0	26	100	0	104	42	0	3	53	1.19
43591576--43591696	60	2.0	60	98	0	233	23	9	14	51	1.73
43593212--43593262	25	2.0	25	88	0	75	17	17	27	37	1.93
43600868--43601045	40	4.5	40	92	2	279	24	28	23	23	1.99
43608932--43609109	40	4.5	40	92	2	279	24	28	23	23	1.99
43613347--43613829	27	17.8	27	75	4	209	38	20	8	33	1.82
43613483--43613746	81	3.3	80	83	6	309	42	20	7	29	1.80
43613851--43613929	27	2.9	27	88	3	97	35	21	24	18	1.96
43614752--43614926	26	6.8	26	86	0	237	27	22	22	27	1.99
43614752--43614926	52	3.4	52	94	1	300	27	22	22	27	1.99
43615071--43615159	42	2.1	42	89	0	133	31	13	19	35	1.90
43617736--43617894	29	5.5	30	87	8	213	27	25	13	33	1.94
43617736--43617866	59	2.3	57	93	5	219	26	25	13	34	1.93
43620106--43620249	38	3.7	38	84	8	175	25	22	27	24	2.00
43620106--43620320	40	5.4	40	82	6	242	26	21	26	25	2.00
43620106--43620320	79	2.7	78	82	4	236	26	21	26	25	2.00
43628194--43628411	40	5.4	40	85	3	260	26	22	26	24	2.00
43628194--43628425	120	1.9	120	83	3	297	26	22	26	24	2.00
43628191--43628451	120	2.2	120	79	3	285	26	22	25	24	2.00
43628284--43628437	80	1.9	80	82	0	191	26	24	25	23	2.00
43630031--43630179	80	1.9	80	81	2	183	22	30	24	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43630072--43630179	40	2.7	38	85	8	128	21	29	25	23	1.99
43638117--43638265	80	1.9	80	81	2	183	22	30	24	22	1.99
43638158--43638265	40	2.7	38	85	8	128	21	29	25	23	1.99
43657169--43657276	43	2.5	43	83	3	128	34	26	15	23	1.95
43661115--43661159	20	2.2	20	80	0	54	4	31	4	60	1.37
43663185--43663392	40	5.2	40	82	1	184	21	26	24	27	1.99
43663211--43663392	80	2.3	80	83	0	220	21	26	23	28	1.99
43671230--43671437	40	5.2	40	82	1	184	21	26	24	27	1.99
43671256--43671437	80	2.3	80	83	0	220	21	26	23	28	1.99
43673680--43673835	27	5.8	28	83	6	153	38	19	10	31	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410