genome.fa.s13.2.7.7.80.10.50.1000.162.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13 124041150 
Parameters: 2 7 7 80 10 50 1000
Length:  124041150

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   

This is table  162  of  410  ( 49152 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49496293--49496468	46	3.8	46	81	10	232	20	21	29	28	1.98
49496289--49496460	93	1.8	93	96	0	317	20	22	30	27	1.98
49498765--49498915	40	3.8	41	77	12	152	26	23	27	22	2.00
49498802--49498931	40	3.3	39	76	8	145	23	23	28	24	2.00
49498764--49498931	80	2.1	80	82	6	207	26	23	27	23	2.00
49503936--49503966	16	1.9	16	93	0	53	35	22	0	41	1.54
49503933--49503972	20	2.0	20	85	0	53	37	22	0	40	1.54
49504205--49504410	54	3.8	53	79	8	211	21	26	16	35	1.95
49511505--49511535	16	1.9	16	93	0	53	35	22	0	41	1.54
49511502--49511541	20	2.0	20	85	0	53	37	22	0	40	1.54
49511774--49511979	55	3.8	53	79	6	198	22	25	16	35	1.95
49517827--49517959	48	2.8	48	79	2	142	24	13	24	37	1.91
49522118--49522335	40	5.5	40	93	2	354	22	22	28	25	1.99
49530555--49530773	40	5.5	40	88	2	300	23	23	26	26	2.00
49532310--49532374	31	2.1	30	86	8	87	38	20	18	23	1.93
49535385--49535571	6	30.8	6	75	16	163	48	13	17	20	1.81
49535364--49535571	30	7.1	30	80	12	218	48	13	17	20	1.81
49535385--49535571	85	2.2	85	96	0	338	48	13	17	20	1.81
49535689--49535754	27	2.5	26	85	7	87	37	22	22	16	1.93
49535689--49535762	27	2.8	27	78	13	82	36	21	24	17	1.95
49535713--49535770	27	2.1	27	84	6	73	36	27	20	15	1.93
49536073--49536155	27	3.1	26	87	5	112	37	21	21	19	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49536354--49536548	27	7.3	27	86	0	239	26	18	18	35	1.95
49536353--49536548	54	3.6	54	87	3	270	26	18	18	36	1.94
49536558--49536879	27	11.9	27	85	0	410	40	9	22	27	1.84
49538411--49538439	13	2.1	14	93	6	51	34	0	0	65	0.93
49543507--49543612	53	2.0	53	100	0	212	47	7	11	33	1.68
49550721--49550766	22	2.1	22	100	0	92	26	21	34	17	1.95
49552602--49552892	139	2.1	141	94	4	520	21	10	28	39	1.86
49553529--49553611	29	2.9	29	96	0	148	28	14	31	25	1.95
49553531--49553636	29	3.9	27	89	7	126	31	15	29	24	1.95
49556818--49556843	10	2.6	10	100	0	52	42	19	7	30	1.79
49557461--49557498	15	2.6	16	84	16	55	57	18	0	23	1.40
49558304--49558328	10	2.5	10	100	0	50	52	8	8	32	1.60
49566557--49566684	42	3.0	41	79	5	157	30	26	14	28	1.95
49571708--49571840	48	2.8	48	89	0	203	33	28	17	20	1.95
49575555--49575606	27	2.0	26	84	3	68	17	26	21	34	1.95
49583107--49583150	2	22.0	2	100	0	88	50	0	0	50	1.00
49585807--49585987	40	4.6	38	77	10	143	26	22	27	23	1.99
49585851--49585996	77	1.9	77	82	2	186	21	23	30	23	1.99
49593918--49594101	40	4.6	39	75	6	138	26	23	27	22	2.00
49593958--49594146	80	2.4	81	77	4	186	23	24	29	22	1.99
49603026--49603124	28	3.5	28	81	9	112	29	25	16	29	1.96
49608065--49608095	15	2.1	15	100	0	62	48	19	0	32	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49610254--49610436	80	2.3	80	80	4	201	26	21	28	24	1.99
49610256--49610406	40	3.8	40	84	4	180	27	21	28	23	1.99
49612385--49612496	46	2.5	45	88	5	156	25	19	29	25	1.99
49615687--49615894	40	5.2	39	84	4	231	25	27	22	25	2.00
49623839--49623987	80	1.9	80	81	2	183	22	30	24	22	1.99
49623880--49623987	40	2.7	38	85	8	128	21	29	25	23	1.99
49630518--49630700	40	4.6	40	79	6	176	25	25	26	23	2.00
49630518--49630702	79	2.3	81	81	7	209	24	24	26	23	2.00
49633686--49633808	49	2.5	49	95	0	219	26	10	33	29	1.90
49633911--49633988	37	2.1	37	100	0	156	28	19	32	20	1.97
49636029--49636221	29	6.7	29	95	1	325	25	16	32	24	1.96
49636000--49636221	115	1.9	117	90	3	360	26	17	31	25	1.97
49636705--49636803	41	2.4	41	80	11	114	26	25	24	24	2.00
49639905--49640027	49	2.5	49	95	0	219	26	10	33	29	1.90
49640130--49640207	37	2.1	37	100	0	156	28	19	32	20	1.97
49648890--49649035	40	3.7	38	78	7	132	26	21	28	23	1.99
49648890--49649035	78	1.9	78	84	5	197	26	21	28	23	1.99
49648938--49649066	40	3.3	40	83	6	149	25	25	26	22	2.00
49664202--49664253	19	2.8	19	70	2	52	30	13	5	50	1.65
49664813--49665909	546	2.0	546	99	0	2185	38	20	9	30	1.85
49666256--49666290	10	3.7	10	85	14	56	25	0	0	74	0.82
49666254--49666290	18	2.1	18	100	0	74	27	0	0	72	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49666531--49666562	15	2.1	15	94	0	55	71	0	28	0	0.86
49674029--49674201	46	3.8	45	76	10	170	23	19	26	30	1.98
49674026--49674196	93	1.8	93	88	0	261	22	19	27	29	1.98
49674426--49674463	19	2.0	20	85	15	53	36	0	23	39	1.55
49682440--49682504	31	2.1	31	88	5	96	30	12	15	41	1.84
49686016--49686079	31	2.1	31	90	0	101	25	23	15	35	1.94
49686272--49686436	23	7.0	24	91	3	248	28	21	21	28	1.99
49686293--49686435	47	3.1	47	94	2	252	29	20	20	28	1.98
49686486--49686551	20	3.3	20	82	0	78	34	22	13	28	1.92
49687796--49687875	27	3.0	27	90	5	119	21	26	21	31	1.98
49687940--49687991	27	1.9	27	88	7	79	36	11	11	40	1.78
49687989--49688185	27	7.3	27	76	7	166	30	9	18	41	1.82
49688028--49688222	81	2.4	81	88	4	270	30	8	20	40	1.83
49688030--49688208	54	3.3	54	82	4	166	29	8	18	42	1.81
49688200--49688359	27	6.0	27	85	0	205	44	9	18	28	1.80
49688199--49688381	54	3.4	54	84	0	242	42	8	19	29	1.81
49688210--49688364	81	1.9	80	89	1	238	44	9	18	27	1.81
49692745--49692793	24	2.0	24	96	0	89	16	6	24	53	1.66
49696931--49696982	25	2.1	25	100	0	104	36	3	23	36	1.73
49703916--49704088	46	3.7	45	81	13	183	29	19	28	21	1.98
49707090--49707325	50	4.7	50	78	10	214	25	17	25	31	1.97
49707090--49707325	101	2.4	99	83	5	271	25	17	25	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49707412--49707463	25	2.0	26	81	11	61	40	1	21	36	1.64
49713024--49713110	37	2.3	36	94	5	147	26	33	19	20	1.97
49713179--49713592	49	8.4	49	93	2	630	30	29	8	31	1.86
49713159--49713579	151	2.8	151	91	2	665	29	30	8	31	1.87
49725177--49725389	46	4.7	46	75	9	177	29	19	27	23	1.98
49727595--49727641	17	2.9	16	78	12	51	6	12	2	78	1.02
49741550--49741609	27	2.3	26	85	2	75	35	16	23	25	1.95
49748990--49749049	27	2.3	26	85	2	75	35	20	23	21	1.96
49749094--49749145	27	2.0	26	84	3	68	34	21	26	17	1.95
49754662--49754799	49	2.9	49	95	4	248	33	7	27	31	1.84
49758332--49758397	20	3.2	20	67	12	53	30	16	33	19	1.94
49758331--49758543	41	5.2	41	86	2	248	34	16	28	21	1.95
49758343--49758576	41	5.7	41	84	3	247	35	15	27	21	1.94
49758334--49758576	82	3.0	82	81	3	274	34	15	27	21	1.94
49758343--49758571	123	1.9	123	82	3	291	35	15	27	21	1.93
49758790--49758872	12	7.2	12	76	10	93	31	19	9	39	1.84
49758790--49758874	22	3.8	22	93	3	134	30	20	9	40	1.84
49759646--49759685	3	13.7	3	94	5	73	67	0	0	32	0.91
49764530--49764651	41	3.0	41	80	2	147	33	17	29	19	1.95
49767243--49767461	122	1.8	121	81	5	271	31	11	23	33	1.90
49767419--49767585	40	4.2	40	79	6	169	26	22	26	24	2.00
49775411--49775560	40	3.8	40	78	8	139	26	22	28	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49775446--49775576	40	3.3	40	80	2	156	24	22	28	25	1.99
49781025--49781154	29	4.5	30	84	8	153	28	26	13	31	1.94
49788919--49789047	28	4.5	29	85	7	156	27	26	13	31	1.94
49788918--49789047	57	2.3	58	83	4	165	27	26	13	31	1.94
49794609--49794722	40	2.8	39	84	2	138	25	28	22	22	1.99
49807752--49808139	50	7.8	50	80	4	394	27	20	29	22	1.99
49807753--49808139	149	2.6	148	81	6	422	27	20	29	22	1.99
49811116--49811149	16	2.1	16	100	0	68	41	5	23	29	1.78
49815867--49815990	45	2.7	46	86	6	162	21	32	17	28	1.96
49815906--49816034	47	2.8	46	80	8	136	23	28	17	30	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410