Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13 124041150 
Parameters: 2 7 7 80 10 50 1000
Length:  124041150

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   

This is table  41  of  410  ( 49152 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10407179--10407295
30
4.0
29
86
8
141
29
12
17
41
1.86
10407229--10407295
29
2.3
27
85
14
82
28
13
16
41
1.86
10410228--10410252
12
2.1
12
100
0
50
60
0
24
16
1.36
10417860--10417913
28
2.0
27
82
7
65
1
11
22
64
1.35
10422667--10422710
22
2.0
22
90
0
70
34
2
4
59
1.30
10422967--10423003
2
18.5
2
94
0
65
48
0
2
48
1.15
10423793--10423837
2
22.5
2
100
0
90
51
0
0
48
1.00
10425666--10425776
47
2.4
47
80
8
129
26
14
22
36
1.92
10427066--10427114
18
2.6
19
84
9
57
51
4
2
42
1.32
10427118--10427161
8
5.2
8
81
8
52
65
0
0
34
0.93
10427117--10427170
10
6.1
9
73
18
51
64
0
0
35
0.94
10428660--10428698
2
19.5
2
100
0
78
51
0
48
0
1.00
10429033--10429255
111
2.0
112
85
8
301
33
10
6
49
1.64
10436394--10436427
17
2.0
17
100
0
68
17
0
35
47
1.48
10436514--10436545
2
16.0
2
100
0
64
50
0
0
50
1.00
10436557--10436640
20
4.2
19
72
14
69
75
4
19
1
1.05
10437016--10437071
12
4.8
12
80
8
53
58
0
10
30
1.32
10437020--10437071
23
2.2
24
83
10
63
59
0
11
28
1.32
10437081--10437143
33
1.9
33
96
0
117
41
0
15
42
1.47
10438889--10438944
21
2.7
21
80
0
67
21
28
30
19
1.98
10443708--10443758
25
2.0
25
100
0
102
39
21
19
19
1.93
10452841--10452927
43
2.0
43
100
0
174
42
22
9
25
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10459701--10459727
14
1.9
14
100
0
54
85
0
14
0
0.61
10467611--10467658
19
2.6
19
80
9
55
35
2
14
47
1.56
10467672--10467764
43
2.2
42
86
5
132
30
5
11
52
1.60
10472341--10472388
19
2.6
19
80
9
55
35
2
14
47
1.56
10472402--10472493
42
2.2
43
90
5
143
28
6
13
52
1.65
10476158--10476202
21
2.1
21
83
0
54
44
26
6
22
1.77
10476906--10476931
2
13.0
2
100
0
52
50
0
0
50
1.00
10479369--10479397
2
14.5
2
100
0
58
48
0
0
51
1.00
10479490--10479542
21
2.5
22
87
3
81
30
5
9
54
1.55
10480118--10480158
21
1.9
23
85
14
61
31
7
4
56
1.48
10480116--10480164
21
2.4
21
80
19
59
34
6
4
55
1.44
10481644--10481732
41
2.2
41
83
4
117
51
5
3
39
1.42
10483096--10483124
14
2.1
14
100
0
58
51
0
20
27
1.47
10483256--10483314
10
6.0
9
84
9
55
67
1
5
25
1.20
10483943--10484124
96
1.9
97
89
1
285
30
25
15
27
1.96
10486727--10486771
15
3.1
14
83
6
54
75
0
2
22
0.91
10486722--10486771
24
2.1
24
88
7
75
74
0
2
24
0.93
10492988--10493031
5
8.6
5
80
14
54
18
0
2
79
0.83
10492989--10493031
11
4.1
11
79
11
54
16
0
2
81
0.79
10492989--10493031
16
2.8
16
92
3
70
16
0
2
81
0.79
10494553--10494602
10
5.0
10
81
13
59
68
2
8
22
1.26
10495407--10495442
18
2.0
18
88
0
54
44
22
5
27
1.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10498445--10498532
30
2.9
30
94
3
151
20
34
28
17
1.95
10498458--10498510
17
3.4
17
66
28
53
20
35
28
15
1.93
10498805--10498830
13
2.0
13
100
0
52
53
15
0
30
1.42
10502141--10502206
33
2.0
33
96
0
123
18
22
16
42
1.89
10503436--10503473
15
2.6
15
87
4
51
73
10
15
0
1.09
10505195--10505222
2
14.0
2
100
0
56
50
0
0
50
1.00
10507439--10507487
23
2.1
23
100
0
98
42
8
0
48
1.32
10507932--10507974
22
2.0
22
90
0
68
46
23
6
23
1.76
10510611--10510735
7
17.6
7
75
12
85
19
1
36
42
1.61
10510611--10510734
29
4.3
29
77
9
94
19
1
37
41
1.61
10510684--10510733
22
2.3
22
82
0
55
20
2
40
38
1.64
10510752--10510797
14
3.4
14
71
17
51
26
2
32
39
1.68
10510927--10510972
21
2.2
21
88
3
67
26
0
32
41
1.56
10510944--10511017
27
2.6
29
82
8
107
28
0
31
40
1.57
10510935--10510979
21
2.1
21
87
0
63
31
0
28
40
1.57
10512602--10512657
27
2.1
27
86
0
76
28
1
12
57
1.46
10512673--10512717
22
2.0
23
82
4
56
51
0
4
44
1.21
10515342--10515412
21
3.4
21
86
0
97
29
18
49
2
1.62
10527415--10527445
16
2.0
15
93
6
53
41
0
0
58
0.98
10531905--10531973
9
7.7
9
81
0
84
26
4
18
50
1.65
10531905--10531973
27
2.6
27
88
0
93
26
4
18
50
1.65
10536969--10536994
6
4.3
6
100
0
52
38
0
61
0
0.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10537146--10537172
14
1.9
14
100
0
54
37
14
18
29
1.91
10540637--10540704
34
2.0
34
100
0
136
41
20
11
26
1.87
10540900--10540954
28
2.0
28
100
0
110
21
9
29
40
1.84
10546151--10546182
16
2.0
16
93
0
55
53
0
6
40
1.26
10547045--10547078
18
1.9
18
88
5
52
67
8
0
23
1.18
10549172--10549217
21
2.3
20
78
14
51
30
10
17
41
1.84
10553248--10553350
3
33.7
3
69
21
54
33
3
0
62
1.14
10553294--10553402
11
9.5
11
68
21
55
33
3
0
63
1.12
10553308--10553358
19
2.8
18
83
13
68
35
0
0
64
0.94
10553249--10553406
17
8.8
18
67
19
82
33
3
0
62
1.13
10553285--10553405
62
2.0
59
83
13
149
33
3
0
62
1.11
10553427--10553480
22
2.3
23
78
6
56
29
3
1
64
1.21
10553460--10553524
27
2.5
26
82
12
71
30
7
0
61
1.24
10553597--10553647
15
3.3
15
71
15
50
29
0
7
62
1.23
10553591--10553651
31
1.9
32
87
9
90
32
0
6
60
1.22
10553937--10554013
33
2.3
35
86
9
122
23
9
7
59
1.54
10554054--10554092
2
19.5
2
100
0
78
48
0
0
51
1.00
10565615--10566197
206
2.8
205
91
1
925
31
18
21
28
1.97
10567958--10568030
14
4.9
14
72
20
58
32
5
0
61
1.19
10568298--10568348
15
3.3
15
71
15
50
27
0
9
62
1.26
10568546--10568588
2
21.5
2
100
0
86
48
0
0
51
1.00
10568750--10568782
2
16.5
2
100
0
66
48
0
0
51
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10575059--10575192
29
4.6
29
90
1
180
27
29
14
28
1.96
10577414--10577682
46
5.8
46
73
14
230
23
20
27
28
1.99
10577410--10577628
47
4.7
47
74
14
195
23
19
28
28
1.98
10577410--10577675
93
2.9
93
90
1
426
23
20
28
27
1.99
10579241--10579281
21
2.0
21
90
4
66
31
7
2
58
1.38
10583937--10583985
24
2.0
24
100
0
98
44
0
8
46
1.33
10583941--10584001
24
2.4
24
86
8
77
47
3
4
44
1.41
10587303--10587346
19
2.4
18
85
7
54
40
9
0
50
1.34
10600475--10600504
15
2.0
15
100
0
60
46
13
20
20
1.83
10610442--10610487
20
2.5
17
80
16
56
71
2
0
26
0.97
10615793--10615817
13
1.9
13
100
0
50
92
0
8
0
0.40
10615898--10615933
16
2.2
17
90
9
58
16
22
0
61
1.35
10619204--10619467
46
5.7
46
91
2
381
22
23
14
40
1.90
10619204--10619467
138
1.9
138
91
0
429
22
23
14
40
1.90
10619204--10619468
92
2.9
92
91
0
422
23
23
13
40
1.90
10621599--10621650
11
4.7
11
76
9
52
63
3
0
32
1.12
10625486--10625523
14
2.8
13
88
7
58
60
0
0
39
0.97
10628292--10628372
23
3.5
23
72
5
65
60
1
0
38
1.05
10629067--10629120
7
7.4
7
76
15
56
42
0
1
55
1.10
10629385--10629420
19
1.9
18
88
5
54
38
0
2
58
1.13
10630982--10631031
24
2.1
24
100
0
100
28
32
24
16
1.96
10632707--10632815
26
4.2
26
90
4
159
37
22
4
34
1.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10632707--10632815
51
2.1
52
89
5
168
37
22
4
34
1.75
10633445--10633496
18
3.0
17
75
5
59
42
0
26
30
1.56
10641269--10641330
22
2.9
20
68
25
54
50
6
4
38
1.50
10641451--10641521
24
3.0
23
75
19
74
60
2
4
32
1.30
10641448--10641529
24
3.6
23
75
16
73
59
3
4
31
1.36
10641994--10642029
19
1.9
18
88
5
54
63
13
2
19
1.41
10643790--10644176
90
4.3
90
79
7
337
34
20
15
29
1.93
10643992--10644030
14
2.8
13
81
11
51
46
10
15
28
1.78
10643832--10644195
178
2.0
176
84
7
475
37
19
15
27
1.92
10644110--10644547
74
5.9
76
79
6
488
32
21
16
29
1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410