Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13 124041150 
Parameters: 2 7 7 80 10 50 1000
Length:  124041150

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   

This is table  350  of  410  ( 49152 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108059345--108059510
40
4.2
40
80
2
165
24
28
21
24
1.99
108067347--108067498
40
3.8
40
83
5
164
23
28
22
26
1.99
108069710--108069824
58
2.1
54
81
6
131
41
20
20
17
1.90
108073080--108073143
23
2.8
23
82
0
92
37
18
23
20
1.94
108075251--108075442
105
1.8
105
96
0
357
36
18
16
28
1.92
108090285--108090402
21
5.7
21
73
2
103
46
16
19
16
1.84
108090264--108090408
42
3.5
42
79
3
150
46
16
19
17
1.85
108090264--108090402
62
2.2
63
80
1
145
47
17
18
16
1.83
108091780--108091957
46
3.8
46
77
4
187
29
27
20
23
1.99
108091788--108091959
93
1.8
93
88
0
263
28
28
20
22
1.99
108094358--108094398
15
2.7
15
88
0
64
58
9
19
12
1.61
108094360--108094407
15
3.2
15
79
5
53
56
14
16
12
1.68
108097369--108097540
93
1.8
93
92
0
290
27
29
21
22
1.99
108097361--108097536
46
3.8
46
79
12
198
28
28
21
22
1.99
108101523--108101703
48
3.7
49
79
9
174
27
29
17
25
1.97
108101630--108101788
46
3.5
44
81
10
160
25
31
16
26
1.97
108101674--108101885
46
4.6
46
76
8
164
24
29
17
28
1.97
108109210--108109319
26
4.2
26
96
0
175
34
5
24
35
1.79
108124628--108124831
102
2.0
102
94
0
354
24
14
28
31
1.95
108127838--108127918
25
3.2
25
75
8
83
29
17
23
29
1.97
108127841--108127936
50
1.9
50
84
0
129
29
18
23
28
1.98
108129846--108129970
42
3.0
42
78
2
126
44
19
21
14
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108138990--108139049
30
2.0
30
90
0
93
40
11
3
45
1.57
108139066--108139102
17
2.1
18
90
5
58
59
10
0
29
1.31
108139066--108139113
17
2.8
17
84
6
53
58
8
2
31
1.39
108142603--108142627
2
12.5
2
100
0
50
0
48
0
52
1.00
108145622--108145660
14
2.9
14
88
3
62
53
0
0
46
1.00
108147680--108147706
2
13.5
2
100
0
54
48
0
0
51
1.00
108149627--108149658
2
16.0
2
100
0
64
50
0
0
50
1.00
108155184--108155212
14
2.1
14
93
6
51
37
0
0
62
0.96
108162733--108162828
30
3.2
30
84
0
138
20
17
45
15
1.85
108166319--108166348
1
30.0
1
93
0
51
3
0
96
0
0.21
108167863--108167890
11
2.5
11
100
0
56
92
0
0
7
0.37
108180844--108180979
26
5.2
26
91
1
220
33
5
24
36
1.79
108187880--108187939
16
3.7
16
71
4
57
23
31
1
43
1.64
108187953--108188356
201
2.0
201
100
0
808
33
15
17
33
1.92
108196962--108197012
2
26.0
2
96
4
95
49
0
0
50
1.00
108199276--108199358
41
2.0
41
97
0
157
31
3
9
55
1.49
108200110--108200140
6
5.0
6
96
4
53
35
0
0
64
0.94
108205159--108205263
54
1.9
56
86
7
153
19
2
34
43
1.65
108205159--108205277
28
4.5
26
84
11
138
16
3
35
44
1.65
108205466--108205550
20
4.0
22
76
13
88
15
21
27
36
1.93
108212380--108212442
19
3.3
19
82
12
67
55
0
0
44
0.99
108213300--108213338
11
3.7
11
80
13
55
30
33
0
35
1.58
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108213299--108213344
20
2.3
20
88
0
74
28
34
0
36
1.58
108215023--108215088
30
2.2
30
83
0
78
28
46
18
6
1.72
108215142--108215184
18
2.4
18
92
0
68
16
27
11
44
1.82
108215569--108215834
116
2.3
115
92
2
435
40
4
8
46
1.54
108215665--108215839
55
3.1
55
68
19
126
42
5
7
45
1.54
108218847--108219385
126
4.3
126
86
0
729
27
20
17
34
1.95
108219469--108219497
15
1.9
15
100
0
58
44
34
0
20
1.52
108220115--108220148
18
2.0
16
88
11
50
70
0
0
29
0.87
108220625--108220654
15
1.9
16
93
6
53
73
16
3
6
1.18
108223124--108223217
49
1.9
49
95
0
170
24
24
7
43
1.80
108224502--108224587
43
2.0
43
93
0
145
22
24
3
50
1.65
108228311--108228409
52
1.9
52
89
0
153
25
19
25
30
1.98
108232537--108232687
10
16.1
9
67
19
60
62
1
1
33
1.17
108232591--108232687
28
3.4
27
77
13
88
63
1
2
32
1.12
108232594--108232688
29
3.4
28
83
11
122
63
1
2
33
1.13
108232572--108232683
10
11.4
10
72
16
74
62
0
1
34
1.12
108232952--108233008
10
5.9
10
79
4
64
40
0
0
59
0.97
108232953--108232988
9
3.9
9
88
3
54
38
0
0
61
0.96
108232957--108233046
19
4.7
19
80
13
87
37
1
1
60
1.12
108232952--108233051
29
3.5
28
71
11
78
38
1
1
60
1.11
108244116--108244153
6
6.3
6
96
0
67
84
2
0
13
0.73
108244110--108244153
18
2.4
18
88
3
70
81
4
0
13
0.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108244112--108244196
26
3.3
26
77
8
77
77
3
4
14
1.06
108248402--108248428
14
1.9
14
100
0
54
59
0
3
37
1.15
108248398--108248456
25
2.4
25
76
0
64
72
1
1
23
1.02
108249883--108249999
56
2.1
56
100
0
234
47
14
15
22
1.81
108253050--108253203
56
2.8
56
86
4
229
31
9
13
46
1.75
108253784--108253816
15
2.1
16
88
5
50
57
12
0
30
1.35
108262097--108262218
54
2.2
55
78
7
133
40
9
16
34
1.80
108263064--108263115
15
3.2
15
73
19
50
44
0
1
53
1.11
108263226--108263256
16
2.0
15
93
6
53
38
0
3
58
1.15
108263722--108263795
31
2.4
32
84
4
89
25
12
10
51
1.71
108269742--108270104
46
8.0
46
90
3
502
41
14
23
20
1.89
108278746--108278807
29
2.1
29
85
5
81
16
17
25
40
1.90
108280018--108280082
29
2.2
29
86
0
85
15
21
29
33
1.94
108285426--108285478
27
2.0
27
84
0
70
30
20
18
30
1.97
108286888--108286920
2
16.5
2
100
0
66
48
0
0
51
1.00
108292413--108292474
30
2.1
30
96
0
115
58
11
3
27
1.48
108292504--108292546
22
2.0
22
85
0
59
58
11
11
18
1.63
108294691--108294741
16
3.2
16
85
0
75
39
0
29
31
1.57
108302596--108302723
40
3.2
40
92
2
193
32
22
19
25
1.98
108302596--108302727
42
3.2
42
90
4
205
32
21
18
26
1.97
108305816--108305865
24
2.1
24
100
0
100
38
4
18
40
1.69
108314478--108314506
5
5.8
5
100
0
58
58
0
0
41
0.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108329893--108329942
24
2.0
24
85
11
66
8
34
0
58
1.28
108331618--108331652
16
2.2
16
89
0
52
2
17
54
25
1.57
108333770--108333919
80
1.9
81
87
1
221
44
20
9
26
1.81
108334320--108334391
34
2.1
34
92
0
117
15
34
5
44
1.70
108335026--108335067
2
21.0
2
100
0
84
50
0
0
50
1.00
108337498--108337529
2
16.0
2
100
0
64
50
0
0
50
1.00
108337665--108337702
19
2.0
19
100
0
76
47
10
10
31
1.72
108337667--108337711
19
2.3
19
92
3
72
51
11
11
26
1.71
108337976--108338019
20
2.2
20
95
0
79
40
15
4
38
1.68
108337982--108338026
20
2.2
20
92
0
72
42
13
6
37
1.70
108339123--108339233
55
2.0
55
96
0
204
36
17
12
33
1.87
108339600--108339711
9
11.7
9
71
14
73
61
0
4
33
1.22
108339599--108339672
29
2.6
29
78
2
87
60
1
2
35
1.19
108339603--108339711
19
5.6
19
72
16
73
61
0
4
33
1.23
108340622--108340675
24
2.2
24
80
0
63
9
24
11
55
1.64
108350994--108351040
22
2.1
22
84
7
60
27
2
0
70
0.99
108352231--108352533
131
2.3
131
82
5
335
34
16
18
30
1.93
108352317--108352562
131
1.9
131
90
1
395
34
16
17
30
1.93
108352992--108353024
2
16.5
2
100
0
66
48
0
0
51
1.00
108356419--108356553
26
5.2
26
97
0
227
36
24
5
34
1.78
108360669--108360717
25
2.0
26
84
8
66
24
16
20
38
1.92
108362201--108362334
26
5.2
26
96
1
218
36
23
5
34
1.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108364663--108364700
16
2.5
16
87
8
53
65
2
0
31
1.06
108372922--108372976
19
2.9
18
78
7
65
29
1
1
67
1.11
108372895--108373100
9
21.4
9
71
14
99
34
2
2
60
1.23
108372916--108373014
30
3.4
29
80
9
112
32
3
2
62
1.22
108372942--108373102
68
2.4
64
80
11
162
35
1
1
60
1.18
108372971--108373102
48
2.8
46
75
20
128
36
2
1
59
1.19
108375589--108375743
24
6.4
24
77
11
156
21
13
30
34
1.92
108380984--108381037
18
3.0
18
76
7
65
46
1
9
42
1.46
108381917--108381985
15
4.6
14
73
26
54
30
1
1
66
1.09
108385952--108385976
12
2.1
12
100
0
50
40
8
20
32
1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410