genome.fa.s13.2.7.7.80.10.50.1000.159.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13 124041150 
Parameters: 2 7 7 80 10 50 1000
Length:  124041150

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   

This is table  159  of  410  ( 49152 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48458164--48458340	96	1.8	96	91	2	293	19	18	28	33	1.95
48458576--48458676	32	3.2	32	97	0	193	23	18	11	45	1.83
48467031--48467112	26	3.2	26	64	19	73	31	28	14	25	1.95
48466923--48467122	50	4.0	50	78	1	204	29	24	18	27	1.98
48467134--48467161	14	2.0	14	100	0	56	35	21	14	28	1.92
48468561--48468613	22	2.4	22	90	0	79	20	33	15	30	1.93
48477583--48477628	17	2.7	18	87	12	71	23	19	30	26	1.98
48478973--48479192	48	4.6	49	85	5	281	26	15	30	26	1.96
48485562--48485675	39	2.9	39	90	1	174	23	21	31	23	1.98
48485608--48485711	40	2.6	40	83	1	120	20	23	32	24	1.98
48494917--48495030	39	2.9	39	90	1	174	23	21	31	23	1.98
48494963--48495066	40	2.6	40	83	1	120	20	23	32	24	1.98
48497316--48497341	12	2.2	12	100	0	52	15	30	15	38	1.88
48497705--48497733	14	2.1	14	100	0	58	31	0	48	20	1.50
48498938--48499213	48	5.8	48	80	4	245	26	17	28	26	1.98
48498946--48499179	96	2.4	96	87	1	308	26	18	29	26	1.98
48498950--48499217	96	2.8	95	82	8	303	26	17	29	26	1.98
48498953--48499213	144	1.8	144	83	5	348	26	18	28	26	1.98
48500459--48500511	18	2.9	18	83	13	72	22	22	39	15	1.91
48509974--48510032	27	2.2	27	84	0	73	33	22	15	28	1.94
48512289--48512344	21	2.5	22	72	16	53	19	16	10	53	1.71
48518405--48518522	41	3.1	41	60	28	98	32	17	28	21	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48518373--48518536	71	2.3	71	100	0	328	35	17	28	18	1.94
48525974--48526091	41	3.1	41	60	28	98	32	17	28	21	1.96
48525942--48526105	71	2.3	71	100	0	328	35	17	28	18	1.94
48533549--48533666	41	3.1	41	60	28	98	32	17	28	21	1.96
48533517--48533680	71	2.3	71	100	0	328	35	17	28	18	1.94
48535287--48535364	34	2.3	35	86	4	106	29	1	20	48	1.57
48535306--48535394	36	2.5	35	80	10	85	37	1	17	43	1.57
48535401--48535492	34	2.8	32	87	8	123	43	0	16	40	1.48
48535926--48535965	8	4.8	8	82	11	53	45	25	12	17	1.83
48541706--48541915	40	5.2	40	87	2	305	25	24	28	21	1.99
48549841--48550050	40	5.2	40	87	2	305	25	24	28	21	1.99
48552486--48552523	18	2.1	19	85	5	51	68	10	0	21	1.19
48555997--48556155	43	3.7	43	79	8	153	28	16	23	31	1.96
48560472--48560501	12	2.5	12	94	0	51	40	26	26	6	1.81
48564428--48564561	42	3.2	42	82	3	162	34	19	20	25	1.96
48567690--48567827	39	3.5	39	88	3	181	23	21	29	24	1.99
48575732--48575838	39	2.7	39	86	2	151	26	20	28	24	1.99
48575738--48575876	40	3.5	40	88	2	183	23	21	30	24	1.99
48577268--48577437	48	3.5	48	75	0	187	29	25	14	30	1.95
48581791--48581962	48	3.6	48	89	0	272	26	18	27	27	1.98
48582063--48582107	22	2.0	22	87	8	65	15	24	15	44	1.85
48585579--48585704	45	2.8	45	92	2	209	26	28	24	20	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48585697--48585867	38	4.5	38	93	0	279	30	26	22	19	1.98
48585697--48585894	76	2.6	76	86	4	274	30	25	22	21	1.99
48586165--48586274	45	2.5	45	85	5	145	28	28	15	28	1.96
48590507--48590666	29	5.5	30	88	8	222	33	13	25	27	1.94
48590507--48590666	59	2.8	57	89	4	223	33	13	25	27	1.94
48592268--48592305	20	1.9	20	88	0	58	34	2	10	52	1.50
48603134--48603220	38	2.3	38	84	7	106	28	25	21	24	1.99
48603492--48603624	43	3.0	44	80	5	153	28	29	17	24	1.97
48606673--48606766	37	2.6	37	79	5	93	29	17	28	24	1.97
48606704--48606805	37	2.8	37	84	0	123	28	15	25	30	1.96
48610121--48610282	48	3.5	47	85	6	208	24	19	30	26	1.98
48620083--48620237	43	3.6	43	85	1	204	27	16	23	32	1.96
48628206--48628246	18	2.3	18	83	8	57	17	24	41	17	1.89
48631499--48631549	21	2.4	21	87	6	59	45	5	11	37	1.65
48631817--48631966	43	3.5	43	85	1	212	26	14	25	33	1.94
48633155--48633200	24	1.9	24	81	0	56	73	0	17	8	1.07
48634488--48634647	29	5.5	29	82	4	180	26	16	31	25	1.97
48642451--48642610	29	5.5	29	82	4	180	26	16	31	25	1.97
48646723--48646845	29	4.2	29	97	0	228	30	15	26	26	1.96
48646724--48646882	58	2.7	58	89	1	203	27	15	30	25	1.96
48646723--48646910	87	2.2	87	83	3	227	27	15	30	26	1.96
48664792--48665049	40	6.5	40	91	2	369	25	29	22	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48675770--48675930	40	4.0	40	85	3	216	20	26	17	36	1.94
48675807--48675870	20	3.2	20	63	0	56	18	32	18	29	1.95
48675770--48675921	80	1.9	80	90	0	241	20	25	17	36	1.94
48682319--48682431	55	2.1	55	81	3	129	29	23	27	20	1.99
48689174--48689211	17	2.2	18	86	13	53	60	0	13	26	1.33
48690793--48690857	23	2.7	23	78	19	71	44	1	0	53	1.09
48698090--48698220	52	2.6	51	86	2	174	26	14	25	33	1.94
48698090--48698277	50	3.7	50	82	2	196	26	17	25	31	1.97
48698090--48698326	51	4.6	51	80	1	206	26	17	25	30	1.97
48698094--48698372	51	5.5	51	79	3	152	26	17	26	29	1.98
48700640--48700809	90	1.9	90	83	2	225	26	22	25	25	2.00
48710264--48710430	43	3.9	43	79	6	169	26	19	25	27	1.99
48710321--48710430	42	2.6	42	80	9	134	27	20	25	27	1.99
48713969--48714136	40	4.2	40	82	1	185	24	26	22	26	2.00
48721978--48722145	40	4.2	40	82	1	185	24	26	22	26	2.00
48728920--48729015	42	2.3	43	81	5	115	33	18	20	27	1.96
48733713--48733751	20	2.0	20	85	10	53	35	20	0	43	1.52
48734448--48734568	43	2.8	43	77	9	140	28	12	23	34	1.91
48734448--48734554	42	2.5	43	79	10	114	29	13	23	33	1.92
48738883--48739024	40	3.5	40	83	1	124	27	23	26	22	1.99
48738922--48739050	40	3.2	39	84	6	152	24	22	27	25	2.00
48746945--48747073	40	3.2	40	83	6	154	24	22	27	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48749590--48749616	2	13.5	2	100	0	54	48	0	0	51	1.00
48757763--48757838	40	1.9	40	97	0	143	43	6	22	27	1.78
48759300--48759448	80	1.9	79	81	5	183	22	30	24	22	1.99
48759341--48759448	40	2.7	39	87	5	137	21	29	25	24	1.99
48767421--48767502	43	1.9	43	84	0	110	25	13	24	36	1.92
48770633--48771043	47	8.7	47	93	1	633	33	7	29	28	1.85
48776769--48776922	40	3.8	41	86	4	181	25	20	26	26	1.99
48776857--48776959	40	2.6	40	87	0	134	28	24	28	19	1.98
48781392--48781793	206	2.0	206	97	0	759	29	25	19	24	1.99
48783059--48783180	29	4.2	28	89	2	147	24	27	15	31	1.96
48783022--48783179	57	2.7	58	83	1	183	24	32	15	27	1.96
48788794--48789203	206	2.0	206	98	0	793	30	25	19	25	1.98
48790456--48790591	29	4.7	29	86	3	157	24	30	15	29	1.95
48790431--48790590	58	2.8	58	81	0	176	23	33	15	27	1.95
48796858--48796895	20	1.9	20	88	0	58	34	2	10	52	1.50
48798524--48798592	28	2.5	28	95	2	122	43	27	10	18	1.82
48804868--48804905	20	1.9	20	88	0	58	34	2	10	52	1.50
48806541--48806625	27	3.1	28	94	3	147	45	24	10	18	1.81
48815017--48815134	46	2.5	46	85	8	150	27	14	29	27	1.95
48816793--48816895	29	3.6	29	81	2	118	21	16	33	29	1.95
48824812--48824914	29	3.6	29	81	2	118	21	16	33	29	1.95
48827570--48827610	22	1.9	22	90	5	66	12	39	29	19	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48835530--48835622	43	2.2	43	82	3	107	29	18	24	27	1.98
48855716--48855765	23	2.2	22	85	3	64	22	24	14	40	1.90
48855725--48855778	22	2.4	23	84	3	74	20	25	14	38	1.91
48864969--48865121	42	3.6	42	84	4	175	29	21	17	31	1.96
48865033--48865131	42	2.4	42	89	3	137	32	23	14	30	1.94
48867547--48867615	24	2.8	24	77	4	75	26	26	17	30	1.97
48867547--48867655	47	2.3	48	82	7	125	26	23	17	32	1.97
48870581--48870770	29	6.6	29	88	1	256	25	32	15	26	1.96
48878006--48878166	29	5.6	29	87	1	207	26	32	16	25	1.96
48884244--48884313	27	2.5	28	88	2	106	28	14	25	31	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410