genome.fa.s13.2.7.7.80.10.50.1000.312.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13 124041150 
Parameters: 2 7 7 80 10 50 1000
Length:  124041150

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   

This is table  312  of  410  ( 49152 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96902597--96902655	30	2.0	30	83	9	77	57	1	1	38	1.19
96902553--96902648	17	5.4	17	75	15	77	61	3	2	33	1.23
96902655--96902715	19	3.1	19	77	13	52	26	1	4	67	1.20
96903201--96903285	40	2.1	40	97	0	161	44	12	4	37	1.64
96906185--96906227	19	2.3	19	81	14	54	55	2	2	39	1.25
96911069--96911240	43	4.0	43	74	10	129	32	25	18	23	1.97
96914572--96914826	68	3.8	68	77	10	229	25	22	15	36	1.94
96914732--96915002	122	2.2	122	84	2	339	25	24	17	32	1.97
96916662--96916763	49	2.1	50	87	5	145	48	13	9	28	1.75
96922323--96922388	21	3.3	21	64	20	59	37	9	21	31	1.85
96922315--96922395	39	2.1	39	100	0	162	35	9	22	32	1.87
96922647--96922705	30	2.0	30	89	0	91	32	10	25	32	1.89
96923125--96923252	46	2.8	45	76	16	138	26	17	28	26	1.98
96924134--96924183	19	2.6	19	100	0	100	16	34	34	16	1.90
96925696--96925896	108	1.8	109	89	4	316	23	24	17	34	1.96
96925649--96925904	55	4.8	54	80	8	260	21	24	17	35	1.95
96930143--96930299	39	4.0	39	95	0	278	20	25	30	23	1.98
96932974--96933088	46	2.5	45	80	13	110	26	29	16	27	1.97
96935540--96935795	55	4.8	54	81	8	269	21	24	17	36	1.95
96935587--96935787	108	1.8	110	89	4	318	22	25	17	34	1.96
96937773--96937839	28	2.4	28	89	0	98	23	16	41	17	1.89
96939792--96939859	31	2.2	30	84	2	91	52	1	7	38	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96945622--96945649	2	14.0	2	100	0	56	50	0	0	50	1.00
96946608--96946660	27	2.0	27	96	0	97	33	9	18	37	1.83
96952802--96952833	15	2.1	16	88	11	50	53	21	0	25	1.46
96961735--96961764	11	2.8	11	95	5	53	93	0	6	0	0.35
96961736--96961765	15	2.0	15	93	0	51	90	0	10	0	0.47
96963923--96964117	98	2.0	96	92	4	320	46	16	8	28	1.76
96972452--96972573	55	2.2	55	82	0	145	12	22	33	31	1.91
96976201--96976350	75	2.0	75	97	0	282	37	16	16	30	1.90
96979404--96979441	19	2.0	20	94	5	69	26	34	13	26	1.93
96981124--96981178	27	2.0	27	96	0	101	38	32	5	23	1.78
96987938--96988066	46	2.8	46	92	2	206	20	20	28	30	1.98
96995448--96995622	46	3.8	45	80	11	212	20	21	29	29	1.98
96995445--96995615	92	1.9	92	96	0	315	21	21	29	28	1.98
97000472--97000641	46	3.7	46	80	9	150	22	29	20	27	1.98
97000517--97000641	47	2.7	45	80	11	137	24	28	18	28	1.98
97004470--97004597	50	2.6	50	84	0	148	39	13	15	32	1.86
97008650--97009048	212	1.8	217	88	4	619	55	20	5	19	1.61
97011431--97011497	30	2.2	30	97	0	125	56	5	4	32	1.43
97012847--97012974	41	3.2	39	80	7	107	36	20	20	22	1.95
97012900--97012992	41	2.3	41	92	0	150	33	23	20	22	1.97
97012964--97013186	41	5.6	41	78	9	239	22	21	30	26	1.99
97013007--97013073	33	2.0	33	91	0	107	26	23	28	20	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97012982--97013184	74	2.6	78	83	6	245	24	20	29	25	1.99
97013343--97013490	14	10.4	14	71	13	61	20	1	33	43	1.61
97013377--97013450	22	3.4	21	71	12	60	24	1	27	47	1.60
97016730--97016807	3	25.7	3	97	2	147	33	0	0	66	0.92
97018577--97018623	24	2.0	24	95	0	85	25	4	19	51	1.65
97018850--97018941	43	2.1	43	85	0	121	27	17	29	26	1.97
97020756--97020815	30	2.0	30	87	6	86	28	26	8	36	1.85
97021625--97021664	21	1.9	21	84	0	53	47	5	5	42	1.47
97022111--97022267	19	8.4	18	71	10	84	33	3	1	61	1.23
97022148--97022265	10	12.4	10	72	12	79	32	2	1	63	1.18
97022130--97022265	10	14.4	10	71	16	76	34	2	1	61	1.17
97022139--97022265	19	6.8	19	72	11	93	33	2	1	62	1.17
97026740--97026767	1	28.0	1	100	0	56	100	0	0	0	0.00
97032972--97033034	20	3.1	20	97	2	117	41	9	19	30	1.83
97035458--97035516	29	2.0	29	96	0	109	16	15	23	44	1.86
97039518--97039573	25	2.1	27	81	18	66	28	5	3	62	1.34
97041183--97041351	85	2.0	85	91	0	275	24	37	18	19	1.94
97048065--97048216	42	3.6	42	73	13	109	24	17	25	33	1.96
97049584--97049627	21	2.1	21	83	8	54	31	0	25	43	1.55
97049776--97049843	34	2.0	34	97	0	127	51	17	10	20	1.74
97051918--97051947	15	2.0	15	93	0	51	23	26	20	30	1.98
97058206--97058293	6	14.3	6	73	17	74	48	15	17	18	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97058215--97058293	19	4.3	18	73	17	72	49	15	17	17	1.80
97058215--97058293	31	2.5	31	91	0	122	49	15	17	17	1.80
97058436--97058500	27	2.4	27	82	5	78	35	23	23	18	1.96
97059067--97059998	27	34.3	27	81	5	977	24	20	20	34	1.96
97059288--97059390	37	2.8	37	95	0	188	18	22	20	38	1.93
97059983--97060296	27	11.6	27	78	8	113	30	8	21	39	1.84
97060034--97060296	27	9.7	27	81	3	251	29	9	21	39	1.84
97060116--97060296	54	3.3	55	90	1	278	29	7	22	40	1.81
97061727--97061790	24	2.7	24	87	2	85	45	17	14	23	1.84
97062937--97062974	20	1.9	20	88	0	58	34	2	10	52	1.50
97064601--97064669	28	2.5	28	95	2	122	43	27	10	18	1.82
97070945--97070982	20	1.9	20	88	0	58	34	2	10	52	1.50
97072609--97072677	28	2.5	28	95	2	122	43	27	10	18	1.82
97074089--97074124	18	1.9	19	88	5	56	52	11	2	33	1.51
97080388--97080456	28	2.5	28	95	2	122	18	10	27	43	1.82
97082085--97082122	20	1.9	20	88	0	58	52	10	2	34	1.50
97083629--97083653	2	12.5	2	100	0	50	48	0	0	52	1.00
97088352--97088443	46	2.0	45	97	2	175	19	22	26	31	1.98
97090727--97090785	22	2.7	23	82	14	72	57	0	5	37	1.21
97090941--97090991	16	3.1	17	77	13	52	64	1	1	31	1.15
97091015--97091055	11	3.5	12	81	15	50	60	0	0	39	0.96
97091017--97091105	28	3.0	28	78	20	76	60	2	4	32	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97091033--97091105	30	2.4	31	80	19	82	61	2	5	30	1.32
97090938--97091178	20	12.5	19	68	24	89	60	1	4	34	1.25
97091118--97091177	7	9.0	7	79	17	65	63	0	0	36	0.95
97091202--97091248	24	2.0	24	87	8	69	61	0	2	36	1.08
97097485--97097533	24	2.0	24	100	0	98	32	24	14	28	1.94
97098977--97099297	45	6.8	45	76	13	281	27	18	28	26	1.98
97099021--97099286	95	2.7	96	86	3	390	27	18	28	25	1.98
97098968--97099297	140	2.3	137	82	7	360	27	17	28	26	1.98
97098970--97099297	146	2.3	140	82	7	410	27	17	28	25	1.98
97109207--97109237	2	15.5	2	100	0	62	51	0	0	48	1.00
97112584--97112671	44	2.0	45	91	6	144	67	6	15	10	1.41
97112612--97112701	28	3.2	28	68	13	78	71	6	11	11	1.31
97115596--97115765	40	4.2	40	84	3	225	25	24	28	21	1.99
97123690--97123859	40	4.2	40	84	3	225	25	24	28	21	1.99
97132241--97132413	93	1.9	93	83	7	226	22	20	27	30	1.98
97135360--97135430	15	4.7	15	77	18	76	11	15	12	60	1.59
97135351--97135430	30	2.7	30	83	11	101	11	15	15	58	1.63
97137357--97137529	93	1.9	93	85	0	238	22	20	27	29	1.98
97139644--97139719	29	2.6	29	82	0	89	27	17	26	28	1.97
97146998--97147029	2	16.0	2	93	0	55	50	3	0	46	1.17
97147687--97147762	29	2.6	29	85	0	98	27	18	26	27	1.98
97151226--97151405	27	6.7	27	90	1	272	29	25	6	38	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97151441--97151591	27	5.6	27	80	6	164	41	23	7	26	1.82
97151408--97151563	54	2.9	54	81	5	174	39	21	10	27	1.87
97151493--97151618	54	2.3	54	81	0	135	41	23	8	26	1.83
97151643--97151694	27	1.9	27	84	7	70	38	23	21	17	1.93
97162185--97162220	2	18.0	2	100	0	72	50	0	0	50	1.00
97162780--97162804	2	12.5	2	100	0	50	48	0	0	52	1.00
97164063--97164328	49	5.5	49	94	1	450	33	7	29	30	1.84
97164983--97165016	2	17.0	2	100	0	68	50	0	0	50	1.00
97166860--97166900	19	2.2	19	90	0	64	51	0	9	39	1.35
97167920--97167949	2	15.0	2	100	0	60	50	0	0	50	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410